Wall clock time and date at job start Tue Mar 31 2020 02:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46998 * 282.83666 * 3 2 1 5 5 C 1.36934 * 119.99989 * 86.85696 * 4 3 2 6 6 H 1.08000 * 119.99918 * 169.44716 * 5 4 3 7 7 C 1.38814 * 120.00099 * 349.44358 * 5 4 3 8 8 N 1.31614 * 119.99903 * 333.58887 * 7 5 4 9 9 Si 1.86800 * 120.00006 * 153.58124 * 7 5 4 10 10 H 1.48500 * 109.46965 * 60.00553 * 9 7 5 11 11 H 1.48502 * 109.47126 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47101 * 300.00663 * 9 7 5 13 13 S 1.65596 * 119.99872 * 266.85524 * 4 3 2 14 14 O 1.42099 * 104.27827 * 31.22586 * 13 4 3 15 15 O 1.42105 * 104.27656 * 159.08519 * 13 4 3 16 16 C 1.81405 * 104.45092 * 275.15488 * 13 4 3 17 17 H 1.08991 * 109.54201 * 66.62787 * 16 13 4 18 18 C 1.53182 * 109.54089 * 306.36522 * 16 13 4 19 19 C 1.53090 * 109.16076 * 183.15002 * 18 16 13 20 20 O 1.42904 * 109.41159 * 57.61347 * 19 18 16 21 21 C 1.42904 * 114.09560 * 298.83530 * 20 19 18 22 22 C 1.53091 * 109.41659 * 61.16589 * 21 20 19 23 23 H 1.08996 * 109.52282 * 62.28767 * 22 21 20 24 24 C 1.52996 * 109.57867 * 182.45587 * 22 21 20 25 25 H 4.40645 * 5.51344 * 179.97438 * 4 1 2 26 26 H 1.08998 * 109.46890 * 42.83854 * 3 2 1 27 27 H 1.08994 * 109.46810 * 162.83945 * 3 2 1 28 28 H 0.97004 * 120.00160 * 179.97438 * 8 7 5 29 29 H 1.09002 * 109.52271 * 303.05828 * 18 16 13 30 30 H 1.08991 * 109.52167 * 63.24399 * 18 16 13 31 31 H 1.08998 * 109.48410 * 297.62751 * 19 18 16 32 32 H 1.09004 * 109.47738 * 177.58851 * 19 18 16 33 33 H 1.08999 * 109.48130 * 301.17720 * 21 20 19 34 34 H 1.09003 * 109.49041 * 181.15241 * 21 20 19 35 35 H 1.08993 * 109.47160 * 179.71428 * 24 22 21 36 36 H 1.09000 * 109.46819 * 299.71439 * 24 22 21 37 37 H 1.09000 * 109.47188 * 59.71215 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.3060 1.3467 5 6 3.3020 -1.6087 1.7341 6 1 3.8183 -1.8360 2.6551 7 6 2.8080 -2.6370 0.9433 8 7 1.7799 -2.4216 0.1503 9 14 3.6026 -4.3265 1.0044 10 1 3.5172 -4.8639 2.3861 11 1 2.8944 -5.2406 0.0726 12 1 5.0282 -4.2179 0.6027 13 16 3.4841 0.9227 2.4004 14 8 2.5762 1.9569 2.0464 15 8 3.4337 0.3105 3.6818 16 6 5.1851 1.4009 1.9898 17 1 5.2098 1.8399 0.9925 18 6 6.0887 0.1647 2.0300 19 6 7.5344 0.5899 1.7599 20 8 7.9317 1.5636 2.7275 21 6 7.1520 2.7610 2.7044 22 6 5.6910 2.4230 3.0125 23 1 5.6182 2.0017 4.0151 24 6 4.8423 3.6932 2.9285 25 1 -1.0500 0.0002 0.0001 26 1 3.0096 -0.7527 -0.6987 27 1 3.0088 0.9827 -0.3032 28 1 1.4349 -3.1401 -0.4027 29 1 6.0239 -0.3022 3.0128 30 1 5.7692 -0.5450 1.2669 31 1 7.6062 1.0199 0.7609 32 1 8.1881 -0.2796 1.8296 33 1 7.2190 3.2193 1.7178 34 1 7.5303 3.4558 3.4543 35 1 3.8018 3.4498 3.1431 36 1 5.2030 4.4199 3.6565 37 1 4.9175 4.1149 1.9262 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882158248.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:26 Heat of formation + Delta-G solvation = -69.689034 kcal Electronic energy + Delta-G solvation = -22388.555691 eV Core-core repulsion = 19066.611601 eV Total energy + Delta-G solvation = -3321.944090 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.39279 -38.04697 -37.90098 -36.82860 -35.69354 -33.51478 -33.25902 -32.59536 -28.18782 -27.94562 -26.43511 -25.55764 -23.33216 -21.53273 -20.17340 -19.65963 -18.90112 -18.18272 -17.75110 -17.07358 -16.73960 -16.35004 -16.07122 -15.65333 -15.45214 -15.28095 -15.06421 -14.62207 -14.26089 -13.82936 -13.48874 -13.30397 -13.19175 -13.02995 -12.85148 -12.73287 -12.64675 -12.55008 -12.28187 -12.11764 -12.08529 -11.98535 -11.72159 -11.34365 -11.12374 -10.86568 -10.46197 -10.35081 -9.90100 -8.01276 -5.70268 -0.53486 1.50579 1.51831 1.58817 1.88281 2.44467 2.55210 2.71896 2.96384 2.99101 3.17414 3.23989 3.39300 3.72293 3.78041 4.01676 4.07603 4.21405 4.28487 4.42093 4.42716 4.52266 4.62019 4.73876 4.79762 4.83606 4.97665 5.01534 5.03958 5.18450 5.23452 5.31485 5.57495 5.74719 6.25913 6.53952 7.11765 7.33496 7.47015 8.93826 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.018054 B = 0.007873 C = 0.006123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.554749 B = 3555.491049 C = 4571.943237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 C -0.128 4.128 3 C 0.256 3.744 4 N -0.866 5.866 5 C -0.338 4.338 6 H 0.098 0.902 7 C 0.001 3.999 8 N -0.885 5.885 9 Si 0.960 3.040 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.256 1.256 13 S 2.588 3.412 14 O -0.999 6.999 15 O -1.004 7.004 16 C -0.564 4.564 17 H 0.159 0.841 18 C -0.139 4.139 19 C 0.071 3.929 20 O -0.398 6.398 21 C 0.078 3.922 22 C -0.115 4.115 23 H 0.076 0.924 24 C -0.176 4.176 25 H 0.222 0.778 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.260 0.740 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.074 0.926 32 H 0.112 0.888 33 H 0.076 0.924 34 H 0.120 0.880 35 H 0.040 0.960 36 H 0.098 0.902 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.683 8.940 -1.359 14.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 C -0.131 4.131 3 C 0.131 3.869 4 N -0.697 5.697 5 C -0.467 4.467 6 H 0.115 0.885 7 C -0.202 4.202 8 N -0.524 5.524 9 Si 0.786 3.214 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.181 1.181 13 S 2.688 3.312 14 O -0.989 6.989 15 O -0.994 6.994 16 C -0.677 4.677 17 H 0.177 0.823 18 C -0.178 4.178 19 C -0.006 4.006 20 O -0.317 6.317 21 C 0.000 4.000 22 C -0.136 4.136 23 H 0.094 0.906 24 C -0.234 4.234 25 H 0.239 0.761 26 H 0.114 0.886 27 H 0.106 0.894 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.120 0.880 31 H 0.092 0.908 32 H 0.130 0.870 33 H 0.094 0.906 34 H 0.137 0.863 35 H 0.059 0.941 36 H 0.117 0.883 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 11.132 9.150 -0.680 14.426 hybrid contribution -0.533 -1.329 -0.349 1.474 sum 10.599 7.821 -1.029 13.212 Atomic orbital electron populations 1.24962 0.96487 1.07318 1.01399 1.23773 0.95662 0.94686 0.98987 1.17916 0.84027 0.99475 0.85524 1.52956 1.76479 1.16962 1.23256 1.19168 1.37386 0.80972 1.09179 0.88456 1.25683 0.95244 1.01516 0.97762 1.70338 1.20065 1.33678 1.28316 0.85514 0.79588 0.78940 0.77377 1.20941 1.21696 1.18072 1.05251 0.79137 0.73030 0.73745 1.93483 1.61780 1.59409 1.84206 1.93433 1.87977 1.76120 1.41895 1.30477 1.20501 1.06186 1.10519 0.82317 1.22038 0.96621 0.94576 1.04532 1.22650 0.92993 0.92618 0.92364 1.87897 1.56748 1.28013 1.59023 1.22701 0.86883 0.86824 1.03566 1.21702 0.99617 0.94838 0.97441 0.90551 1.22189 0.98591 0.97215 1.05366 0.76121 0.88643 0.89425 0.92950 0.91580 0.87964 0.90765 0.86967 0.90618 0.86251 0.94119 0.88286 0.89530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -13.30 19.16 74.32 1.42 -11.87 16 2 C -0.13 -6.37 10.90 31.13 0.34 -6.03 16 3 C 0.26 11.45 5.04 84.58 0.43 11.88 16 4 N -0.87 -40.71 2.38 -352.52 -0.84 -41.55 16 5 C -0.34 -17.31 8.34 84.03 0.70 -16.61 16 6 H 0.10 5.07 7.32 -2.91 -0.02 5.04 16 7 C 0.00 0.04 4.84 84.86 0.41 0.45 16 8 N -0.89 -47.26 9.04 21.65 0.20 -47.07 16 9 Si 0.96 40.68 29.63 68.60 2.03 42.71 16 10 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.29 -12.39 7.11 99.48 0.71 -11.69 16 12 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 13 S 2.59 110.79 4.16 -56.49 -0.24 110.55 16 14 O -1.00 -45.95 15.34 -127.65 -1.96 -47.91 16 15 O -1.00 -50.80 16.76 -127.65 -2.14 -52.94 16 16 C -0.56 -16.66 2.43 30.72 0.07 -16.59 16 17 H 0.16 3.72 8.14 -2.39 -0.02 3.70 16 18 C -0.14 -4.02 5.01 30.69 0.15 -3.86 16 19 C 0.07 1.58 6.84 72.01 0.49 2.07 16 20 O -0.40 -9.60 10.77 -148.98 -1.60 -11.21 16 21 C 0.08 1.53 6.13 72.01 0.44 1.97 16 22 C -0.12 -2.95 2.41 -10.70 -0.03 -2.98 16 23 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 24 C -0.18 -4.10 8.87 71.98 0.64 -3.46 16 25 H 0.22 8.54 7.80 -4.42 -0.03 8.51 16 26 H 0.10 4.31 6.72 -2.39 -0.02 4.29 16 27 H 0.09 3.20 7.82 -2.39 -0.02 3.18 16 28 H 0.26 13.50 8.31 -92.71 -0.77 12.73 16 29 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.10 3.06 7.22 -2.39 -0.02 3.04 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.11 2.16 8.14 -2.38 -0.02 2.14 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.04 1.20 5.89 -2.39 -0.01 1.19 16 36 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -70.80 313.73 1.58 -69.22 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 1.05 Total: 23.21 kcal Atomic # 6 Polarization: -50.11 SS G_CDS: 5.08 Total: -45.03 kcal Atomic # 7 Polarization: -87.97 SS G_CDS: -0.64 Total: -88.61 kcal Atomic # 8 Polarization: -106.35 SS G_CDS: -5.70 Total: -112.05 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Atomic # 16 Polarization: 110.79 SS G_CDS: -0.24 Total: 110.55 kcal Total: -70.80 1.58 -69.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882158248.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.468 kcal (2) G-P(sol) polarization free energy of solvation -70.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds