Wall clock time and date at job start Tue Mar 31 2020 02:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00286 * 2 1 4 4 H 1.48495 * 109.47360 * 270.00260 * 3 2 1 5 5 H 1.48505 * 109.47069 * 30.00437 * 3 2 1 6 6 H 1.48505 * 109.47051 * 149.99975 * 3 2 1 7 7 C 1.37880 * 119.99330 * 180.02562 * 2 1 3 8 8 C 1.51266 * 120.85369 * 359.97438 * 7 2 1 9 9 C 1.53233 * 108.69594 * 231.42222 * 8 7 2 10 10 C 1.52955 * 109.40144 * 305.27439 * 9 8 7 11 11 H 1.08998 * 109.41949 * 303.49572 * 10 9 8 12 12 N 1.46507 * 109.41104 * 183.63220 * 10 9 8 13 13 C 1.34778 * 119.99658 * 155.00172 * 12 10 9 14 14 O 1.21275 * 120.00153 * 359.97438 * 13 12 10 15 15 C 1.50702 * 119.99611 * 180.02562 * 13 12 10 16 16 C 1.53038 * 113.15252 * 280.54647 * 15 13 12 17 17 S 1.81489 * 89.86584 * 211.87022 * 16 15 13 18 18 O 1.42097 * 112.71824 * 280.43156 * 17 16 15 19 19 O 1.42107 * 112.78135 * 136.69566 * 17 16 15 20 20 C 1.53046 * 113.15064 * 180.11618 * 15 13 12 21 21 C 1.52965 * 109.81734 * 63.60162 * 10 9 8 22 22 C 1.51663 * 121.09677 * 180.16000 * 7 2 1 23 23 H 0.97006 * 119.99639 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.62649 * 111.60989 * 8 7 2 25 25 H 1.09001 * 109.62544 * 351.23335 * 8 7 2 26 26 H 1.08998 * 109.48072 * 65.25266 * 9 8 7 27 27 H 1.09003 * 109.47981 * 185.29774 * 9 8 7 28 28 H 0.96995 * 120.00146 * 335.00368 * 12 10 9 29 29 H 1.08996 * 112.49619 * 50.33534 * 15 13 12 30 30 H 1.09009 * 113.14918 * 327.11625 * 16 15 13 31 31 H 1.09000 * 113.14966 * 96.59520 * 16 15 13 32 32 H 1.08996 * 113.15019 * 263.40909 * 20 15 13 33 33 H 1.09005 * 113.14458 * 32.88640 * 20 15 13 34 34 H 1.08997 * 109.48290 * 56.37766 * 21 10 9 35 35 H 1.08998 * 109.48095 * 176.40585 * 21 10 9 36 36 H 1.09001 * 109.55834 * 8.85985 * 22 7 2 37 37 H 1.09000 * 109.59489 * 248.36146 * 22 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1942 -0.0005 8 6 1.2675 -2.5152 -0.0005 9 6 1.8191 -3.3853 1.1338 10 6 3.3359 -3.5142 0.9837 11 1 3.5695 -3.9192 -0.0009 12 7 3.8524 -4.4159 2.0164 13 6 5.0082 -5.0793 1.8149 14 8 5.6203 -4.9302 0.7786 15 6 5.5393 -6.0073 2.8770 16 6 6.2498 -5.2736 4.0166 17 16 7.3626 -6.6914 4.2299 18 8 6.7660 -7.7516 4.9641 19 8 8.7174 -6.3045 4.4148 20 6 6.8598 -6.6753 2.4868 21 6 3.9907 -2.1403 1.1367 22 6 3.5208 -1.2234 0.0031 23 1 -0.4850 0.8401 0.0004 24 1 1.4190 -3.0189 -0.9552 25 1 0.2031 -2.3406 0.1564 26 1 1.5867 -2.9225 2.0929 27 1 1.3639 -4.3746 1.0873 28 1 3.3627 -4.5355 2.8451 29 1 4.7876 -6.7154 3.2259 30 1 6.7647 -4.3702 3.6894 31 1 5.6076 -5.0987 4.8798 32 1 6.7282 -7.6735 2.0695 33 1 7.4924 -6.0426 1.8642 34 1 3.7069 -1.7070 2.0957 35 1 5.0745 -2.2472 1.0926 36 1 3.9048 -0.2160 0.1641 37 1 3.8813 -1.6072 -0.9513 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182816228.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:49 Heat of formation + Delta-G solvation = -97.996431 kcal Electronic energy + Delta-G solvation = -20944.687961 eV Core-core repulsion = 17621.516370 eV Total energy + Delta-G solvation = -3323.171591 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.02831 -37.70616 -37.20123 -36.42938 -35.72003 -33.79567 -31.62089 -29.73717 -27.59976 -26.96331 -24.49384 -22.01888 -21.53444 -20.02217 -19.53300 -19.16335 -17.81350 -16.81862 -16.58880 -16.17106 -15.94955 -15.43494 -15.21753 -14.51280 -14.08984 -13.84772 -13.45287 -13.22056 -12.82615 -12.60182 -12.57737 -12.40040 -12.20824 -12.13966 -11.89490 -11.70971 -11.27428 -11.08054 -10.88621 -10.79357 -10.68748 -10.26044 -10.07019 -9.74394 -9.58017 -9.07149 -8.92932 -8.54769 -8.38923 -6.15538 -4.06865 -0.22685 1.58900 2.64866 3.23373 3.25921 3.32046 3.32721 3.33352 3.76519 3.86535 4.26107 4.33966 4.55090 4.81674 4.93865 5.03094 5.12515 5.38197 5.58429 5.64875 5.80291 6.10783 6.37444 6.40267 6.63209 6.66494 6.81497 6.88844 7.04335 7.15726 7.36998 7.57811 7.64176 7.67650 7.81894 8.32027 8.38144 8.89928 9.49198 10.93830 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.035777 B = 0.003534 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.430722 B = 7920.659026 C = 8222.079453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.077 3.923 3 Si 0.887 3.113 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.265 1.265 7 C -0.488 4.488 8 C 0.012 3.988 9 C -0.114 4.114 10 C 0.152 3.848 11 H 0.079 0.921 12 N -0.718 5.718 13 C 0.532 3.468 14 O -0.534 6.534 15 C -0.098 4.098 16 C -0.591 4.591 17 S 2.415 3.585 18 O -0.914 6.914 19 O -0.923 6.923 20 C -0.577 4.577 21 C -0.112 4.112 22 C -0.020 4.020 23 H 0.265 0.735 24 H 0.006 0.994 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.036 0.964 28 H 0.396 0.604 29 H 0.134 0.866 30 H 0.149 0.851 31 H 0.133 0.867 32 H 0.129 0.871 33 H 0.155 0.845 34 H 0.051 0.949 35 H 0.036 0.964 36 H 0.036 0.964 37 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.112 -12.049 9.265 18.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.190 1.190 7 C -0.507 4.507 8 C -0.025 4.025 9 C -0.153 4.153 10 C 0.050 3.950 11 H 0.097 0.903 12 N -0.367 5.367 13 C 0.314 3.686 14 O -0.411 6.411 15 C -0.121 4.121 16 C -0.719 4.719 17 S 2.596 3.404 18 O -0.911 6.911 19 O -0.920 6.920 20 C -0.706 4.706 21 C -0.151 4.151 22 C -0.058 4.058 23 H 0.075 0.925 24 H 0.024 0.976 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.229 0.771 29 H 0.151 0.849 30 H 0.167 0.833 31 H 0.151 0.849 32 H 0.147 0.853 33 H 0.173 0.827 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 11.053 -12.406 9.325 19.054 hybrid contribution -0.629 1.464 -0.324 1.626 sum 10.424 -10.943 9.001 17.591 Atomic orbital electron populations 1.69831 1.06132 1.26993 1.49859 1.24820 0.94709 0.98592 0.94486 0.86671 0.79954 0.83209 0.78599 1.20346 1.21630 1.18989 1.20109 0.89293 0.91425 1.49921 1.19341 0.98771 0.92804 0.91633 1.21934 0.92182 0.98695 1.02450 1.21130 0.94673 0.88958 0.90264 0.90271 1.46401 1.23349 1.45391 1.21567 1.19607 0.81352 0.80515 0.87094 1.90710 1.57939 1.64918 1.27515 1.21622 0.97254 0.97919 0.95352 1.30962 1.15944 1.19669 1.05351 1.08300 0.75282 0.77867 0.78938 1.93722 1.78958 1.50477 1.67928 1.93655 1.31624 1.82146 1.84572 1.30852 1.04951 1.09614 1.25158 1.21879 0.97194 0.95129 1.00931 1.19854 0.96631 0.95489 0.93829 0.92545 0.97563 0.92062 0.92660 0.94537 0.77081 0.84858 0.83327 0.84900 0.85290 0.82719 0.93028 0.94515 0.94595 0.96232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.97 12.73 55.43 0.71 -24.27 16 2 C 0.08 2.04 5.46 -17.82 -0.10 1.94 16 3 Si 0.89 20.70 27.55 -169.99 -4.68 16.02 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.26 -5.98 6.11 56.52 0.35 -5.64 16 7 C -0.49 -12.50 5.54 -98.73 -0.55 -13.05 16 8 C 0.01 0.30 5.95 -27.49 -0.16 0.13 16 9 C -0.11 -2.21 5.40 -26.63 -0.14 -2.36 16 10 C 0.15 2.82 2.35 -67.97 -0.16 2.66 16 11 H 0.08 1.64 7.58 -51.93 -0.39 1.24 16 12 N -0.72 -10.21 5.07 -53.84 -0.27 -10.48 16 13 C 0.53 7.44 7.29 -10.98 -0.08 7.36 16 14 O -0.53 -9.69 15.61 5.56 0.09 -9.60 16 15 C -0.10 -0.86 3.81 -91.73 -0.35 -1.21 16 16 C -0.59 -3.92 7.49 37.18 0.28 -3.64 16 17 S 2.42 16.24 7.55 -107.50 -0.81 15.43 16 18 O -0.91 -8.53 18.18 -57.30 -1.04 -9.57 16 19 O -0.92 -9.55 18.18 -57.30 -1.04 -10.59 16 20 C -0.58 -4.37 7.18 37.18 0.27 -4.11 16 21 C -0.11 -2.27 5.50 -26.65 -0.15 -2.41 16 22 C -0.02 -0.46 5.60 -27.31 -0.15 -0.61 16 23 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 24 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 25 H 0.06 1.60 7.07 -51.93 -0.37 1.23 16 26 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.40 4.38 8.60 -40.82 -0.35 4.03 16 29 H 0.13 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.15 1.06 8.11 -51.92 -0.42 0.64 16 31 H 0.13 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.13 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.15 1.35 7.58 -51.93 -0.39 0.96 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.04 0.83 4.64 -51.93 -0.24 0.59 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 311.93 15.07 4.70 4.70 Total: -1.00 -35.12 311.93 -8.82 -43.94 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -5.16 Total: -0.28 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -1.30 Total: -15.30 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: 0.43 Total: -34.75 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -2.00 Total: -29.76 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.68 Total: 16.02 kcal Atomic # 16 Polarization: 16.24 SS G_CDS: -0.81 Total: 15.43 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -35.12 -8.82 -43.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182816228.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.054 kcal (2) G-P(sol) polarization free energy of solvation -35.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds