Wall clock time and date at job start Tue Mar 31 2020 02:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99774 * 2 1 4 4 H 1.48498 * 109.47170 * 270.00343 * 3 2 1 5 5 H 1.48502 * 109.47061 * 30.00683 * 3 2 1 6 6 H 1.48507 * 109.46897 * 149.99963 * 3 2 1 7 7 C 1.37878 * 120.00320 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00043 * 359.97438 * 7 2 1 9 9 S 1.76196 * 120.00057 * 179.97438 * 7 2 1 10 10 O 1.42100 * 106.40333 * 66.45996 * 9 7 2 11 11 O 1.42099 * 106.40232 * 293.53760 * 9 7 2 12 12 N 1.65605 * 107.21855 * 179.97438 * 9 7 2 13 13 C 1.47173 * 120.85797 * 100.24632 * 12 9 7 14 14 C 1.53244 * 109.50144 * 123.47158 * 13 12 9 15 15 C 1.51597 * 109.08118 * 47.77523 * 14 13 12 16 16 O 1.20762 * 121.26489 * 127.89610 * 15 14 13 17 17 C 1.50830 * 117.46621 * 307.88004 * 15 14 13 18 18 H 1.08998 * 109.47452 * 295.51899 * 17 15 14 19 19 C 1.52587 * 111.65163 * 174.13350 * 17 15 14 20 20 C 1.53286 * 108.60695 * 179.19593 * 19 17 15 21 21 C 1.52843 * 110.21318 * 59.16872 * 20 19 17 22 22 C 1.54303 * 110.10103 * 301.57524 * 21 20 19 23 23 C 1.46346 * 120.85282 * 280.22684 * 12 9 7 24 24 H 1.09000 * 109.33847 * 120.01939 * 23 12 9 25 25 H 0.96994 * 120.00475 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46205 * 3.46413 * 13 12 9 27 27 H 1.08997 * 109.45700 * 243.48160 * 13 12 9 28 28 H 1.08998 * 109.54148 * 287.89679 * 14 13 12 29 29 H 1.09004 * 109.59860 * 167.69689 * 14 13 12 30 30 H 1.08994 * 109.61530 * 298.92856 * 19 17 15 31 31 H 1.09001 * 109.61530 * 59.46224 * 19 17 15 32 32 H 1.09004 * 109.34955 * 179.39364 * 20 19 17 33 33 H 1.08997 * 109.35219 * 299.08926 * 20 19 17 34 34 H 1.08995 * 109.34438 * 62.03750 * 21 20 19 35 35 H 1.09001 * 109.34532 * 181.73113 * 21 20 19 36 36 H 1.08996 * 110.23628 * 299.69129 * 22 21 20 37 37 H 1.08996 * 109.49386 * 178.85092 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 16 3.7665 -1.1939 -0.0012 10 8 4.1683 -0.6498 1.2485 11 8 4.1673 -0.6493 -1.2510 12 7 4.2568 -2.7757 -0.0011 13 6 4.6945 -3.4305 -1.2443 14 6 6.1125 -3.9817 -1.0604 15 6 6.1808 -4.7481 0.2457 16 8 6.6051 -5.8779 0.2880 17 6 5.6990 -4.0457 1.4905 18 1 6.3423 -3.1905 1.6973 19 6 5.6913 -4.9799 2.6969 20 6 5.2116 -4.1930 3.9218 21 6 3.8096 -3.6363 3.6760 22 6 3.8114 -2.7259 2.4301 23 6 4.2664 -3.5584 1.2355 24 1 3.6071 -4.4190 1.1231 25 1 -0.4850 0.8399 0.0004 26 1 4.6893 -2.7053 -2.0580 27 1 4.0148 -4.2486 -1.4826 28 1 6.8242 -3.1564 -1.0364 29 1 6.3556 -4.6487 -1.8876 30 1 5.0147 -5.8136 2.5098 31 1 6.6988 -5.3557 2.8751 32 1 5.1912 -4.8525 4.7895 33 1 5.8974 -3.3674 4.1120 34 1 3.1147 -4.4621 3.5242 35 1 3.4951 -3.0543 4.5424 36 1 4.4953 -1.8897 2.5752 37 1 2.8036 -2.3509 2.2522 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192933181.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:05 Heat of formation + Delta-G solvation = -142.061069 kcal Electronic energy + Delta-G solvation = -22637.635279 eV Core-core repulsion = 19312.552902 eV Total energy + Delta-G solvation = -3325.082377 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.50028 -38.99509 -37.78262 -36.60561 -36.47208 -35.16420 -32.55565 -31.53012 -30.11325 -28.53492 -24.96591 -24.18219 -23.53546 -20.99431 -20.66714 -20.44973 -19.15997 -18.30127 -17.44182 -17.16402 -16.71310 -16.30544 -16.00572 -15.87643 -15.52965 -15.29432 -14.90785 -14.63905 -14.52815 -14.21990 -13.87268 -13.47536 -13.29996 -13.20550 -13.14048 -13.03367 -12.67817 -12.55889 -12.29958 -12.26449 -12.02213 -11.73080 -11.68138 -11.36921 -11.26757 -11.07854 -10.82432 -10.34158 -9.94331 -8.94800 -7.49768 0.08248 0.88442 1.06060 1.14730 1.21723 1.89435 2.33183 2.44228 3.00866 3.34428 3.57604 3.66492 3.68805 4.04250 4.09667 4.11484 4.17482 4.28729 4.31918 4.41060 4.47852 4.58129 4.66578 4.83635 4.84611 4.93059 4.97747 5.05111 5.14875 5.24580 5.30175 5.33713 5.39771 5.47246 5.68197 5.81642 6.03553 6.44243 6.55879 8.22800 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.022873 B = 0.007483 C = 0.006351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.874935 B = 3740.684622 C = 4407.498749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.110 3.890 3 Si 0.821 3.179 4 H -0.243 1.243 5 H -0.224 1.224 6 H -0.220 1.220 7 C -1.034 5.034 8 H 0.101 0.899 9 S 2.697 3.303 10 O -1.007 7.007 11 O -1.028 7.028 12 N -0.999 5.999 13 C 0.116 3.884 14 C -0.178 4.178 15 C 0.377 3.623 16 O -0.477 6.477 17 C -0.151 4.151 18 H 0.113 0.887 19 C -0.098 4.098 20 C -0.115 4.115 21 C -0.111 4.111 22 C -0.166 4.166 23 C 0.171 3.829 24 H 0.080 0.920 25 H 0.290 0.710 26 H 0.103 0.897 27 H 0.086 0.914 28 H 0.113 0.887 29 H 0.122 0.878 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.216 -7.696 3.981 13.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.107 4.107 3 Si 0.638 3.362 4 H -0.167 1.167 5 H -0.146 1.146 6 H -0.142 1.142 7 C -1.166 5.166 8 H 0.120 0.880 9 S 2.799 3.201 10 O -0.997 6.997 11 O -1.018 7.018 12 N -0.836 5.836 13 C -0.009 4.009 14 C -0.217 4.217 15 C 0.254 3.746 16 O -0.352 6.352 17 C -0.172 4.172 18 H 0.131 0.869 19 C -0.136 4.136 20 C -0.152 4.152 21 C -0.149 4.149 22 C -0.205 4.205 23 C 0.065 3.935 24 H 0.098 0.902 25 H 0.100 0.900 26 H 0.122 0.878 27 H 0.104 0.896 28 H 0.132 0.868 29 H 0.140 0.860 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.125 0.875 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.803 -7.452 3.976 13.713 hybrid contribution -1.089 0.638 -0.328 1.304 sum 9.713 -6.814 3.649 12.413 Atomic orbital electron populations 1.70017 1.07567 1.30364 1.40647 1.25147 0.95524 1.01358 0.88638 0.87549 0.83324 0.82883 0.82460 1.16671 1.14616 1.14160 1.31034 1.18206 1.01302 1.66063 0.88050 1.00693 0.75623 0.71321 0.72423 1.93427 1.84622 1.77537 1.44089 1.93348 1.85103 1.77050 1.46306 1.57507 1.81407 1.30391 1.14344 1.21556 0.94374 0.99060 0.85888 1.22728 0.98734 1.02657 0.97628 1.24803 0.71125 0.86138 0.92533 1.90356 1.36295 1.19659 1.88875 1.22299 0.98043 1.01225 0.95612 0.86908 1.21353 1.02603 0.97003 0.92599 1.21569 0.95979 0.99989 0.97651 1.21694 0.98127 0.98612 0.96494 1.22766 1.03323 0.99743 0.94633 1.20828 0.95202 0.94541 0.82908 0.90221 0.89974 0.87843 0.89580 0.86846 0.85966 0.91389 0.90305 0.89491 0.91450 0.91375 0.90821 0.87475 0.92383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -48.83 13.96 21.45 0.30 -48.53 16 2 C 0.11 6.16 5.47 84.66 0.46 6.62 16 3 Si 0.82 39.82 26.54 68.60 1.82 41.64 16 4 H -0.24 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.22 -9.67 7.11 99.48 0.71 -8.96 16 6 H -0.22 -10.66 5.61 99.48 0.56 -10.11 16 7 C -1.03 -56.26 9.42 67.73 0.64 -55.62 16 8 H 0.10 5.73 8.06 -2.91 -0.02 5.71 16 9 S 2.70 126.18 3.67 -56.49 -0.21 125.97 16 10 O -1.01 -48.32 11.76 -128.00 -1.51 -49.83 16 11 O -1.03 -51.28 15.24 -128.00 -1.95 -53.23 16 12 N -1.00 -35.91 3.23 -491.70 -1.59 -37.50 16 13 C 0.12 3.38 6.50 86.33 0.56 3.94 16 14 C -0.18 -4.15 6.32 30.22 0.19 -3.96 16 15 C 0.38 9.87 6.59 29.43 0.19 10.07 16 16 O -0.48 -14.17 17.08 -1.45 -0.02 -14.20 16 17 C -0.15 -3.96 2.23 -11.49 -0.03 -3.98 16 18 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 19 C -0.10 -2.16 4.80 30.55 0.15 -2.01 16 20 C -0.11 -2.35 5.89 30.64 0.18 -2.17 16 21 C -0.11 -2.81 5.93 30.98 0.18 -2.63 16 22 C -0.17 -5.65 3.79 30.89 0.12 -5.54 16 23 C 0.17 5.40 2.53 45.02 0.11 5.51 16 24 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 25 H 0.29 14.94 8.31 -92.71 -0.77 14.17 16 26 H 0.10 3.14 6.76 -2.39 -0.02 3.12 16 27 H 0.09 2.20 8.14 -2.39 -0.02 2.19 16 28 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.08 1.62 8.13 -2.39 -0.02 1.60 16 32 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.11 3.99 5.74 -2.39 -0.01 3.97 16 37 H 0.06 2.34 6.79 -2.39 -0.02 2.32 16 Total: -1.00 -65.38 295.97 0.52 -64.86 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.92 Total: 20.58 kcal Atomic # 6 Polarization: -52.53 SS G_CDS: 2.76 Total: -49.77 kcal Atomic # 7 Polarization: -84.74 SS G_CDS: -1.29 Total: -86.03 kcal Atomic # 8 Polarization: -113.77 SS G_CDS: -3.48 Total: -117.25 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 1.82 Total: 41.64 kcal Atomic # 16 Polarization: 126.18 SS G_CDS: -0.21 Total: 125.97 kcal Total: -65.38 0.52 -64.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192933181.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.203 kcal (2) G-P(sol) polarization free energy of solvation -65.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds