Wall clock time and date at job start Tue Mar 31 2020 02:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00114 * 2 1 4 4 H 1.48492 * 109.47181 * 270.00233 * 3 2 1 5 5 H 1.48507 * 109.46687 * 30.00229 * 3 2 1 6 6 H 1.48501 * 109.47035 * 149.99498 * 3 2 1 7 7 C 1.37883 * 120.00179 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99567 * 359.97438 * 7 2 1 9 9 S 1.76197 * 120.00188 * 180.02562 * 7 2 1 10 10 O 1.42101 * 106.40267 * 66.45783 * 9 7 2 11 11 O 1.42101 * 106.40242 * 293.53850 * 9 7 2 12 12 N 1.65602 * 107.21969 * 179.97438 * 9 7 2 13 13 C 1.47176 * 120.85521 * 260.16796 * 12 9 7 14 14 C 1.53250 * 109.50171 * 236.52277 * 13 12 9 15 15 C 1.51595 * 109.08272 * 312.23104 * 14 13 12 16 16 O 1.20761 * 121.26696 * 232.38842 * 15 14 13 17 17 C 1.50844 * 117.46624 * 52.11476 * 15 14 13 18 18 H 1.08995 * 109.47270 * 64.47394 * 17 15 14 19 19 C 1.52581 * 111.65054 * 185.86371 * 17 15 14 20 20 C 1.53288 * 108.61358 * 180.78736 * 19 17 15 21 21 C 1.52834 * 110.21755 * 300.84795 * 20 19 17 22 22 C 1.53283 * 110.22387 * 58.18610 * 21 20 19 23 23 C 1.46338 * 120.85613 * 80.18569 * 12 9 7 24 24 H 1.08996 * 109.34125 * 239.98090 * 23 12 9 25 25 H 0.97004 * 119.99943 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.46382 * 356.53541 * 13 12 9 27 27 H 1.09001 * 109.46061 * 116.51302 * 13 12 9 28 28 H 1.08994 * 109.53283 * 192.34824 * 14 13 12 29 29 H 1.08996 * 109.52968 * 72.11330 * 14 13 12 30 30 H 1.08999 * 109.61286 * 300.52956 * 19 17 15 31 31 H 1.09005 * 109.61521 * 61.05529 * 19 17 15 32 32 H 1.08994 * 109.34644 * 180.61303 * 20 19 17 33 33 H 1.08997 * 109.21816 * 60.99259 * 20 19 17 34 34 H 1.08999 * 109.34298 * 297.95313 * 21 20 19 35 35 H 1.09000 * 109.21843 * 178.33658 * 21 20 19 36 36 H 1.09001 * 109.61321 * 181.14656 * 22 21 20 37 37 H 1.09003 * 109.75639 * 60.71602 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7002 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 16 3.7665 -1.1941 0.0001 10 8 4.1673 -0.6504 1.2504 11 8 4.1683 -0.6488 -1.2491 12 7 4.2568 -2.7759 0.0000 13 6 4.6858 -3.4333 1.2449 14 6 6.1051 -3.9843 1.0696 15 6 6.1824 -4.7478 -0.2377 16 8 6.6021 -5.8794 -0.2787 17 6 5.7091 -4.0426 -1.4843 18 1 6.3538 -3.1870 -1.6847 19 6 5.7098 -4.9742 -2.6927 20 6 5.2382 -4.1849 -3.9192 21 6 3.8346 -3.6287 -3.6818 22 6 3.8236 -2.7309 -2.4394 23 6 4.2749 -3.5559 -1.2381 24 1 3.6148 -4.4167 -1.1320 25 1 -0.4850 0.8401 -0.0004 26 1 4.6751 -2.7098 2.0600 27 1 4.0044 -4.2518 1.4768 28 1 6.3410 -4.6533 1.8971 29 1 6.8168 -3.1589 1.0524 30 1 6.7186 -5.3495 -2.8648 31 1 5.0321 -5.8086 -2.5119 32 1 5.2238 -4.8427 -4.7882 33 1 5.9272 -3.3603 -4.1019 34 1 3.1387 -4.4550 -3.5364 35 1 3.5276 -3.0466 -4.5506 36 1 2.8146 -2.3563 -2.2677 37 1 4.5052 -1.8928 -2.5845 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192933182.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:09 Heat of formation + Delta-G solvation = -142.831937 kcal Electronic energy + Delta-G solvation = -22634.989403 eV Core-core repulsion = 19309.873599 eV Total energy + Delta-G solvation = -3325.115804 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.50925 -39.00959 -37.77990 -36.62556 -36.47153 -35.16469 -32.56604 -31.55861 -30.13089 -28.53491 -24.97057 -24.18809 -23.53956 -20.98660 -20.66996 -20.44928 -19.15838 -18.31870 -17.44654 -17.15955 -16.71580 -16.30513 -16.01553 -15.88774 -15.51575 -15.28875 -14.91393 -14.65299 -14.54028 -14.23187 -13.81405 -13.51524 -13.32366 -13.23732 -13.13274 -13.05807 -12.70531 -12.58431 -12.28104 -12.24121 -11.90500 -11.74851 -11.71294 -11.34600 -11.27794 -11.07735 -10.88899 -10.34358 -9.94549 -8.94950 -7.49898 0.08138 0.88321 1.05943 1.14977 1.21525 1.89262 2.32848 2.44187 3.00586 3.34697 3.56886 3.65921 3.68951 4.04039 4.09216 4.11337 4.17162 4.29278 4.31894 4.40822 4.48360 4.57541 4.66521 4.83413 4.84972 4.92959 4.97510 5.04872 5.14685 5.24769 5.29769 5.33489 5.39684 5.47153 5.67582 5.81399 6.03422 6.44171 6.55757 8.22688 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.022873 B = 0.007478 C = 0.006349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.876819 B = 3743.465580 C = 4409.053860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.110 3.890 3 Si 0.823 3.177 4 H -0.236 1.236 5 H -0.226 1.226 6 H -0.227 1.227 7 C -1.034 5.034 8 H 0.101 0.899 9 S 2.697 3.303 10 O -1.026 7.026 11 O -1.009 7.009 12 N -0.999 5.999 13 C 0.117 3.883 14 C -0.178 4.178 15 C 0.377 3.623 16 O -0.477 6.477 17 C -0.151 4.151 18 H 0.113 0.887 19 C -0.098 4.098 20 C -0.115 4.115 21 C -0.111 4.111 22 C -0.165 4.165 23 C 0.171 3.829 24 H 0.079 0.921 25 H 0.290 0.710 26 H 0.103 0.897 27 H 0.086 0.914 28 H 0.122 0.878 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.218 -7.686 -3.745 13.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.107 4.107 3 Si 0.640 3.360 4 H -0.159 1.159 5 H -0.148 1.148 6 H -0.149 1.149 7 C -1.166 5.166 8 H 0.120 0.880 9 S 2.799 3.201 10 O -1.016 7.016 11 O -0.999 6.999 12 N -0.836 5.836 13 C -0.008 4.008 14 C -0.217 4.217 15 C 0.254 3.746 16 O -0.352 6.352 17 C -0.172 4.172 18 H 0.131 0.869 19 C -0.136 4.136 20 C -0.152 4.152 21 C -0.149 4.149 22 C -0.203 4.203 23 C 0.065 3.935 24 H 0.097 0.903 25 H 0.100 0.900 26 H 0.122 0.878 27 H 0.104 0.896 28 H 0.140 0.860 29 H 0.131 0.869 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 10.800 -7.443 -3.726 13.635 hybrid contribution -1.079 0.639 0.258 1.280 sum 9.722 -6.804 -3.468 12.362 Atomic orbital electron populations 1.70022 1.07559 1.30363 1.40636 1.25152 0.95529 1.01368 0.88636 0.87514 0.82894 0.82837 0.82724 1.15927 1.14798 1.14930 1.31036 1.18200 1.01311 1.66086 0.88048 1.00691 0.75629 0.71320 0.72430 1.93403 1.85108 1.76990 1.46142 1.93378 1.84626 1.77567 1.44317 1.57488 1.81588 1.30403 1.14117 1.21556 0.94439 0.99005 0.85816 1.22728 0.98725 1.02676 0.97614 1.24804 0.71038 0.86175 0.92578 1.90356 1.36258 1.19567 1.88989 1.22297 0.98039 1.01229 0.95612 0.86906 1.21356 1.02631 0.97022 0.92568 1.21570 0.95949 0.99997 0.97670 1.21506 0.98171 0.98756 0.96468 1.22529 1.03311 0.99912 0.94590 1.20788 0.95190 0.94586 0.82942 0.90258 0.89967 0.87848 0.89568 0.85960 0.86859 0.90292 0.91392 0.89473 0.91443 0.91404 0.90765 0.92423 0.87663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -48.81 13.96 21.45 0.30 -48.51 16 2 C 0.11 6.15 5.47 84.66 0.46 6.62 16 3 Si 0.82 39.94 26.54 68.60 1.82 41.76 16 4 H -0.24 -11.01 7.11 99.48 0.71 -10.31 16 5 H -0.23 -9.79 7.11 99.48 0.71 -9.08 16 6 H -0.23 -11.22 5.61 99.48 0.56 -10.66 16 7 C -1.03 -56.33 9.48 67.74 0.64 -55.69 16 8 H 0.10 5.74 8.06 -2.91 -0.02 5.72 16 9 S 2.70 126.43 3.68 -56.49 -0.21 126.22 16 10 O -1.03 -51.47 14.44 -128.00 -1.85 -53.32 16 11 O -1.01 -48.41 12.59 -128.00 -1.61 -50.02 16 12 N -1.00 -35.95 3.23 -491.70 -1.59 -37.54 16 13 C 0.12 3.40 6.50 86.33 0.56 3.96 16 14 C -0.18 -4.15 6.32 30.22 0.19 -3.96 16 15 C 0.38 9.88 6.59 29.43 0.19 10.07 16 16 O -0.48 -14.17 17.08 -1.45 -0.02 -14.20 16 17 C -0.15 -3.96 2.24 -11.49 -0.03 -3.98 16 18 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 19 C -0.10 -2.16 4.80 30.55 0.15 -2.02 16 20 C -0.11 -2.35 5.90 30.64 0.18 -2.17 16 21 C -0.11 -2.81 5.90 30.63 0.18 -2.63 16 22 C -0.16 -5.62 3.74 30.54 0.11 -5.50 16 23 C 0.17 5.40 2.53 45.02 0.11 5.52 16 24 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 25 H 0.29 14.94 8.31 -92.71 -0.77 14.17 16 26 H 0.10 3.14 6.76 -2.39 -0.02 3.13 16 27 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.08 1.62 8.13 -2.39 -0.02 1.60 16 31 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.09 1.41 8.14 -2.39 -0.02 1.40 16 33 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.06 2.33 6.85 -2.39 -0.02 2.31 16 37 H 0.11 3.91 5.78 -2.39 -0.01 3.90 16 Total: -1.00 -65.53 296.08 0.52 -65.01 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.92 Total: 20.39 kcal Atomic # 6 Polarization: -52.56 SS G_CDS: 2.76 Total: -49.80 kcal Atomic # 7 Polarization: -84.76 SS G_CDS: -1.29 Total: -86.05 kcal Atomic # 8 Polarization: -114.05 SS G_CDS: -3.48 Total: -117.53 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 1.82 Total: 41.76 kcal Atomic # 16 Polarization: 126.43 SS G_CDS: -0.21 Total: 126.22 kcal Total: -65.53 0.52 -65.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192933182.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.818 kcal (2) G-P(sol) polarization free energy of solvation -65.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds