Wall clock time and date at job start Tue Mar 31 2020 02:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.29947 * 126.28980 * 2 1 4 4 O 1.21293 * 110.25357 * 180.02562 * 3 2 1 5 5 C 1.33644 * 109.81329 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.54982 * 180.02562 * 5 4 3 7 7 H 1.09003 * 110.32269 * 195.75913 * 6 5 4 8 8 C 1.54913 * 110.36818 * 73.52429 * 6 5 4 9 9 C 1.55152 * 101.58038 * 204.14745 * 8 6 5 10 10 C 1.54325 * 102.94307 * 35.50343 * 9 8 6 11 11 N 1.47014 * 107.27025 * 337.80669 * 10 9 8 12 12 S 1.65606 * 125.64800 * 178.98090 * 11 10 9 13 13 O 1.42101 * 106.40181 * 23.49193 * 12 11 10 14 14 O 1.42097 * 106.40209 * 156.41408 * 12 11 10 15 15 C 1.76206 * 107.21393 * 269.95330 * 12 11 10 16 16 H 1.08001 * 120.00092 * 0.02562 * 15 12 11 17 17 C 1.37876 * 119.99998 * 179.97438 * 15 12 11 18 18 N 1.31522 * 119.99866 * 0.02562 * 17 15 12 19 19 Si 1.86801 * 120.00166 * 180.02562 * 17 15 12 20 20 H 1.48492 * 109.47058 * 89.99916 * 19 17 15 21 21 H 1.48504 * 109.46994 * 210.00246 * 19 17 15 22 22 H 1.48505 * 109.46999 * 329.99695 * 19 17 15 23 23 N 1.31131 * 106.89535 * 0.02562 * 5 4 3 24 24 H 1.09001 * 109.47343 * 270.00060 * 1 2 3 25 25 H 1.09000 * 109.47482 * 30.00453 * 1 2 3 26 26 H 1.09009 * 109.47369 * 149.99898 * 1 2 3 27 27 H 1.09000 * 111.00010 * 322.22750 * 8 6 5 28 28 H 1.09007 * 111.00009 * 86.03750 * 8 6 5 29 29 H 1.09008 * 110.71765 * 153.86404 * 9 8 6 30 30 H 1.08998 * 110.72160 * 276.95811 * 9 8 6 31 31 H 1.09005 * 109.88085 * 97.22170 * 10 9 8 32 32 H 1.09001 * 109.88045 * 218.38271 * 10 9 8 33 33 H 0.96999 * 119.99885 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2760 1.0474 0.0000 4 8 3.4418 0.7124 -0.0005 5 6 3.5298 -0.6212 -0.0003 6 6 4.7969 -1.4369 -0.0003 7 1 4.5827 -2.4691 -0.2777 8 6 5.4733 -1.3823 1.3923 9 6 6.9511 -1.6890 1.0331 10 6 7.1248 -0.9974 -0.3356 11 7 5.7853 -0.8497 -0.9231 12 16 5.4434 -0.1419 -2.3807 13 8 6.6323 -0.2228 -3.1548 14 8 4.2001 -0.6818 -2.8071 15 6 5.1638 1.5709 -2.0759 16 1 5.2346 1.9591 -1.0705 17 6 4.8555 2.4158 -3.1209 18 7 4.7697 1.9431 -4.3453 19 14 4.5597 4.2317 -2.7979 20 1 5.8438 4.9694 -2.9068 21 1 3.5978 4.7620 -3.7973 22 1 4.0022 4.4073 -1.4327 23 7 2.3029 -1.0841 -0.0002 24 1 -0.3634 0.0000 1.0277 25 1 -0.3634 0.8899 -0.5139 26 1 -0.3634 -0.8900 -0.5139 27 1 5.3763 -0.3910 1.8351 28 1 5.0652 -2.1455 2.0550 29 1 7.6255 -1.2562 1.7722 30 1 7.1124 -2.7636 0.9484 31 1 7.5804 -0.0164 -0.2000 32 1 7.7488 -1.6116 -0.9847 33 1 4.5524 2.5374 -5.0805 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192963562.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:48 Heat of formation + Delta-G solvation = -46.626340 kcal Electronic energy + Delta-G solvation = -22196.204550 eV Core-core repulsion = 18771.720190 eV Total energy + Delta-G solvation = -3424.484360 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.077 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -46.52001 -39.62251 -37.56827 -36.99938 -36.26567 -35.23025 -34.10369 -31.80078 -30.43559 -29.71216 -28.29058 -24.99237 -24.21124 -22.56514 -22.00218 -20.76413 -19.51520 -19.00104 -18.65187 -17.76914 -17.55888 -16.97784 -16.26263 -15.89730 -15.33347 -14.98289 -14.81759 -14.50417 -14.41329 -14.07273 -13.78121 -13.58545 -13.35189 -13.13826 -13.07401 -12.97993 -12.64513 -12.56547 -12.40663 -12.31547 -12.20367 -12.10036 -12.07361 -11.58919 -11.29317 -11.07609 -10.86167 -9.99162 -8.80234 -7.50022 0.02016 0.22178 1.22553 1.25426 1.27121 1.43353 1.81420 2.14281 2.50004 2.53199 2.89598 3.15476 3.49089 3.63043 3.65872 3.91957 4.18876 4.28389 4.36548 4.51311 4.57740 4.59266 4.65994 4.79930 4.91332 4.97665 4.98760 5.08499 5.13696 5.18141 5.26605 5.42234 5.64363 5.89875 6.75846 7.17318 8.15457 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.013444 B = 0.010770 C = 0.007326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.163786 B = 2599.282613 C = 3820.922065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.153 3.847 3 N -0.409 5.409 4 O 0.085 5.915 5 C 0.162 3.838 6 C 0.237 3.763 7 H 0.130 0.870 8 C -0.112 4.112 9 C -0.106 4.106 10 C 0.102 3.898 11 N -1.019 6.019 12 S 2.719 3.281 13 O -1.033 7.033 14 O -1.035 7.035 15 C -1.018 5.018 16 H 0.118 0.882 17 C 0.078 3.922 18 N -0.895 5.895 19 Si 0.977 3.023 20 H -0.246 1.246 21 H -0.265 1.265 22 H -0.254 1.254 23 N -0.485 5.485 24 H 0.117 0.883 25 H 0.090 0.910 26 H 0.100 0.900 27 H 0.082 0.918 28 H 0.127 0.873 29 H 0.118 0.882 30 H 0.105 0.895 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.566 -5.184 15.091 15.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.120 4.120 3 N -0.119 5.119 4 O 0.029 5.971 5 C -0.060 4.060 6 C 0.128 3.872 7 H 0.147 0.853 8 C -0.152 4.152 9 C -0.144 4.144 10 C -0.022 4.022 11 N -0.859 5.859 12 S 2.823 3.177 13 O -1.023 7.023 14 O -1.025 7.025 15 C -1.153 5.153 16 H 0.136 0.864 17 C -0.135 4.135 18 N -0.527 5.527 19 Si 0.796 3.204 20 H -0.170 1.170 21 H -0.190 1.190 22 H -0.177 1.177 23 N -0.220 5.220 24 H 0.135 0.865 25 H 0.108 0.892 26 H 0.119 0.881 27 H 0.100 0.900 28 H 0.145 0.855 29 H 0.136 0.864 30 H 0.123 0.877 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.244 -5.121 13.963 14.924 hybrid contribution -0.152 1.414 -0.537 1.520 sum -1.396 -3.707 13.426 13.998 Atomic orbital electron populations 1.20345 0.79893 1.05373 1.05954 1.26754 1.02391 0.83052 0.99811 1.74516 0.89884 1.25303 1.22161 1.85359 1.22189 1.24589 1.64959 1.29523 0.98055 0.82675 0.95709 1.20581 0.78841 0.93547 0.94221 0.85286 1.23008 0.95784 1.05047 0.91316 1.22679 0.95234 1.02634 0.93894 1.22090 0.81628 1.01880 0.96608 1.58937 1.14521 1.75381 1.37043 0.99984 0.71655 0.75902 0.70200 1.93305 1.51139 1.89392 1.68510 1.93329 1.46713 1.82099 1.80375 1.30773 1.62777 1.18626 1.03084 0.86369 1.25844 0.88235 1.06578 0.92802 1.69987 1.40920 1.40504 1.01305 0.85309 0.79889 0.75430 0.79790 1.16972 1.18964 1.17730 1.71702 0.99581 1.30004 1.20733 0.86496 0.89160 0.88102 0.89957 0.85463 0.86387 0.87673 0.91278 0.91054 0.89262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.48 10.51 71.23 0.75 -0.73 16 2 C 0.15 5.86 8.22 138.46 1.14 7.00 16 3 N -0.41 -17.94 12.16 -60.34 -0.73 -18.67 16 4 O 0.08 3.80 8.82 74.83 0.66 4.46 16 5 C 0.16 6.51 5.71 88.38 0.50 7.01 16 6 C 0.24 7.72 3.62 44.72 0.16 7.89 16 7 H 0.13 3.79 8.14 -2.39 -0.02 3.77 16 8 C -0.11 -2.24 6.49 31.99 0.21 -2.03 16 9 C -0.11 -1.76 6.95 31.78 0.22 -1.54 16 10 C 0.10 2.96 6.99 86.73 0.61 3.57 16 11 N -1.02 -40.54 3.58 -488.20 -1.75 -42.29 16 12 S 2.72 150.92 4.58 -56.49 -0.26 150.66 16 13 O -1.03 -62.97 17.60 -128.00 -2.25 -65.22 16 14 O -1.04 -63.84 16.64 -128.00 -2.13 -65.97 16 15 C -1.02 -57.74 8.19 67.73 0.55 -57.18 16 16 H 0.12 6.22 7.11 -2.91 -0.02 6.20 16 17 C 0.08 4.52 5.46 84.65 0.46 4.98 16 18 N -0.90 -55.14 13.19 21.45 0.28 -54.86 16 19 Si 0.98 43.90 29.54 68.60 2.03 45.93 16 20 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 21 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 22 H -0.25 -11.11 7.11 99.48 0.71 -10.41 16 23 N -0.49 -19.26 11.55 -303.21 -3.50 -22.77 16 24 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 25 H 0.09 2.20 8.14 -2.39 -0.02 2.19 16 26 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 27 H 0.08 1.71 8.05 -2.39 -0.02 1.69 16 28 H 0.13 1.65 8.14 -2.38 -0.02 1.63 16 29 H 0.12 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 32 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.30 16.55 8.31 -92.71 -0.77 15.78 16 Total: -1.00 -86.10 297.86 -1.91 -88.02 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: 1.14 Total: 11.76 kcal Atomic # 6 Polarization: -35.65 SS G_CDS: 4.60 Total: -31.04 kcal Atomic # 7 Polarization: -132.89 SS G_CDS: -5.70 Total: -138.59 kcal Atomic # 8 Polarization: -123.01 SS G_CDS: -3.72 Total: -126.74 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: 150.92 SS G_CDS: -0.26 Total: 150.66 kcal Total: -86.10 -1.91 -88.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192963562.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.389 kcal (2) G-P(sol) polarization free energy of solvation -86.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds