Wall clock time and date at job start Tue Mar 31 2020 02:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40085 * 126.02980 * 2 1 4 4 C 1.30835 * 108.20167 * 180.02562 * 3 2 1 5 5 C 1.39878 * 108.20541 * 359.78351 * 4 3 2 6 6 C 1.34943 * 126.04196 * 180.02562 * 2 1 3 7 7 S 1.76204 * 126.12502 * 359.94162 * 6 2 1 8 8 O 1.42105 * 106.39972 * 96.46140 * 7 6 2 9 9 O 1.42098 * 106.40426 * 323.54313 * 7 6 2 10 10 N 1.65595 * 107.21987 * 210.00025 * 7 6 2 11 11 C 1.34782 * 119.99720 * 65.00174 * 10 7 6 12 12 O 1.21279 * 120.00244 * 0.02562 * 11 10 7 13 13 C 1.50705 * 119.99815 * 180.02562 * 11 10 7 14 14 C 1.52997 * 109.46836 * 180.02562 * 13 11 10 15 15 C 1.50705 * 109.46836 * 179.97438 * 14 13 11 16 16 H 1.07997 * 120.00049 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99676 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00070 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99687 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47146 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47113 * 120.00198 * 19 17 15 22 22 H 1.48501 * 109.47460 * 240.00343 * 19 17 15 23 23 H 1.08999 * 109.47395 * 269.97578 * 1 2 3 24 24 H 1.09000 * 109.47518 * 29.98087 * 1 2 3 25 25 H 1.09007 * 109.46724 * 149.98125 * 1 2 3 26 26 H 1.08001 * 125.90234 * 179.97438 * 4 3 2 27 27 H 1.07999 * 126.04512 * 180.23353 * 5 4 3 28 28 H 0.96997 * 120.00034 * 245.00430 * 10 7 6 29 29 H 1.08999 * 109.47258 * 299.99964 * 13 11 10 30 30 H 1.08993 * 109.47094 * 59.99973 * 13 11 10 31 31 H 1.08999 * 109.47039 * 299.99941 * 14 13 11 32 32 H 1.09002 * 109.47223 * 59.99992 * 14 13 11 33 33 H 0.96993 * 119.99551 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1329 0.0000 4 6 3.5345 0.7323 -0.0006 5 6 3.5438 -0.6664 0.0041 6 6 2.2590 -1.0911 -0.0005 7 16 1.7194 -2.7685 0.0002 8 8 1.7415 -3.1976 -1.3543 9 8 0.5535 -2.8147 0.8112 10 7 2.8739 -3.6546 0.7903 11 6 3.1057 -3.4432 2.1011 12 8 2.4684 -2.6044 2.7021 13 6 4.1568 -4.2491 2.8200 14 6 4.2175 -3.8157 4.2860 15 6 5.2682 -4.6221 5.0050 16 1 5.8355 -5.3693 4.4700 17 6 5.5052 -4.4059 6.3460 18 7 4.8140 -3.4963 6.9977 19 14 6.8070 -5.4059 7.2375 20 1 7.4378 -6.3567 6.2870 21 1 7.8429 -4.4937 7.7852 22 1 6.1756 -6.1620 8.3487 23 1 -0.3634 -0.0004 1.0276 24 1 -0.3634 0.8901 -0.5135 25 1 -0.3633 -0.8899 -0.5142 26 1 4.4053 1.3712 -0.0011 27 1 4.4212 -1.2961 0.0084 28 1 3.3834 -4.3256 0.3097 29 1 3.9037 -5.3079 2.7647 30 1 5.1264 -4.0824 2.3509 31 1 4.4704 -2.7569 4.3416 32 1 3.2478 -3.9828 4.7548 33 1 4.9805 -3.3446 7.9411 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261214873.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:12 Heat of formation + Delta-G solvation = -32.486842 kcal Electronic energy + Delta-G solvation = -20735.663951 eV Core-core repulsion = 17311.792726 eV Total energy + Delta-G solvation = -3423.871225 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.077 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.37514 -39.83669 -37.49763 -36.27812 -34.47912 -33.66066 -33.49625 -31.14210 -30.71879 -27.03749 -26.11307 -22.76955 -22.52699 -21.55607 -20.46445 -19.71333 -18.27638 -17.88035 -17.32569 -16.17027 -15.85209 -15.75734 -15.32082 -15.10986 -14.55667 -14.34566 -14.06084 -13.93412 -13.02810 -12.97955 -12.81003 -12.78998 -12.41627 -12.31679 -12.23536 -11.79926 -11.35322 -11.13049 -11.02482 -10.80078 -10.67077 -10.13802 -10.09436 -9.94256 -9.56269 -9.20088 -8.98763 -8.42069 -6.05361 -4.10738 -0.16682 1.10143 2.11826 2.28415 2.44233 2.56065 3.24241 3.27705 3.35441 3.37897 4.18793 4.27614 4.39389 4.64830 4.85764 4.93738 5.10101 5.12896 5.21434 5.28069 5.30364 5.42909 5.94497 5.96218 6.30002 6.46004 6.47941 6.80267 7.23356 7.61315 7.68376 7.77662 7.93639 8.28258 8.96799 9.53919 11.05511 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.025743 B = 0.004191 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.402064 B = 6678.721746 C = 7091.256402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.307 5.307 3 N -0.256 5.256 4 C 0.037 3.963 5 C -0.163 4.163 6 C -0.475 4.475 7 S 2.698 3.302 8 O -0.939 6.939 9 O -0.922 6.922 10 N -1.050 6.050 11 C 0.525 3.475 12 O -0.475 6.475 13 C -0.129 4.129 14 C 0.031 3.969 15 C -0.530 4.530 16 H 0.059 0.941 17 C 0.059 3.941 18 N -0.888 5.888 19 Si 0.894 3.106 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.097 0.903 24 H 0.101 0.899 25 H 0.087 0.913 26 H 0.196 0.804 27 H 0.161 0.839 28 H 0.436 0.564 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.027 0.973 32 H 0.027 0.973 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.898 3.120 -17.172 17.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.091 5.091 3 N -0.081 5.081 4 C -0.147 4.147 5 C -0.195 4.195 6 C -0.685 4.685 7 S 2.783 3.217 8 O -0.928 6.928 9 O -0.911 6.911 10 N -0.821 5.821 11 C 0.314 3.686 12 O -0.344 6.344 13 C -0.171 4.171 14 C -0.007 4.007 15 C -0.568 4.568 16 H 0.077 0.923 17 C -0.143 4.143 18 N -0.526 5.526 19 Si 0.722 3.278 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 H 0.116 0.884 24 H 0.120 0.880 25 H 0.106 0.894 26 H 0.213 0.787 27 H 0.179 0.821 28 H 0.274 0.726 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.120 4.571 -16.877 18.525 hybrid contribution 2.039 -0.918 0.468 2.285 sum -4.082 3.652 -16.408 17.298 Atomic orbital electron populations 1.22258 0.72911 1.04863 1.05555 1.48124 1.06509 1.01581 1.52863 1.77251 1.02244 1.08370 1.20239 1.24073 0.95379 0.94784 1.00491 1.21535 0.94929 0.96108 1.06884 1.33167 1.00771 1.16453 1.18065 1.02298 0.73396 0.72533 0.73467 1.93678 1.85740 1.80020 1.33393 1.93670 1.43504 1.85300 1.68669 1.55084 1.56032 1.50180 1.20771 1.21893 0.84196 0.83345 0.79179 1.90885 1.46750 1.32381 1.64350 1.22079 0.95018 0.99411 1.00546 1.19017 0.98186 0.97533 0.85927 1.21189 1.20155 1.20753 0.94697 0.92293 1.25025 0.96310 0.95291 0.97674 1.69998 1.40381 1.32686 1.09577 0.86512 0.81492 0.80033 0.79769 1.19675 1.20998 1.20976 0.88443 0.88026 0.89437 0.78708 0.82130 0.72626 0.88772 0.88763 0.95493 0.95412 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.93 10.64 59.85 0.64 1.57 16 2 N -0.31 -4.44 4.01 -67.25 -0.27 -4.71 16 3 N -0.26 -3.75 12.58 30.63 0.39 -3.36 16 4 C 0.04 0.47 12.03 -17.36 -0.21 0.26 16 5 C -0.16 -2.10 10.67 -40.01 -0.43 -2.52 16 6 C -0.47 -6.82 6.50 -17.23 -0.11 -6.93 16 7 S 2.70 36.74 5.05 -107.50 -0.54 36.20 16 8 O -0.94 -13.03 18.02 -57.17 -1.03 -14.06 16 9 O -0.92 -15.23 15.63 -64.61 -1.01 -16.24 16 10 N -1.05 -12.63 5.63 31.22 0.18 -12.46 16 11 C 0.53 8.73 7.66 -10.98 -0.08 8.64 16 12 O -0.48 -9.99 14.85 -11.51 -0.17 -10.16 16 13 C -0.13 -2.23 5.64 -27.88 -0.16 -2.39 16 14 C 0.03 0.77 4.26 -27.88 -0.12 0.65 16 15 C -0.53 -14.06 9.11 -34.44 -0.31 -14.38 16 16 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 19 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.09 0.83 7.22 -51.93 -0.37 0.46 16 26 H 0.20 1.67 8.06 -52.49 -0.42 1.25 16 27 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 28 H 0.44 3.26 8.83 -34.47 -0.30 2.95 16 29 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 32 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 308.86 15.07 4.65 4.65 Total: -1.00 -37.57 308.86 -6.57 -44.15 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -3.60 Total: -0.58 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: -0.88 Total: -13.56 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: 1.03 Total: -46.18 kcal Atomic # 8 Polarization: -38.25 SS G_CDS: -2.21 Total: -40.46 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 36.74 SS G_CDS: -0.54 Total: 36.20 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -37.57 -6.57 -44.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261214873.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.660 kcal (2) G-P(sol) polarization free energy of solvation -37.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds