Wall clock time and date at job start Tue Mar 31 2020 02:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40085 * 126.02980 * 2 1 4 4 C 1.30835 * 108.20167 * 180.02562 * 3 2 1 5 5 C 1.39878 * 108.20541 * 359.78351 * 4 3 2 6 6 C 1.34943 * 126.04196 * 180.02562 * 2 1 3 7 7 S 1.76204 * 126.12502 * 359.94162 * 6 2 1 8 8 O 1.42105 * 106.39972 * 96.46140 * 7 6 2 9 9 O 1.42098 * 106.40426 * 323.54313 * 7 6 2 10 10 N 1.65595 * 107.21987 * 210.00025 * 7 6 2 11 11 C 1.34782 * 119.99720 * 65.00174 * 10 7 6 12 12 O 1.21279 * 120.00244 * 0.02562 * 11 10 7 13 13 C 1.50705 * 119.99815 * 180.02562 * 11 10 7 14 14 C 1.52997 * 109.46836 * 180.02562 * 13 11 10 15 15 C 1.50705 * 109.46836 * 179.97438 * 14 13 11 16 16 H 1.07997 * 120.00049 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99676 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00070 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99687 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47146 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47113 * 120.00198 * 19 17 15 22 22 H 1.48501 * 109.47460 * 240.00343 * 19 17 15 23 23 H 1.08999 * 109.47395 * 269.97578 * 1 2 3 24 24 H 1.09000 * 109.47518 * 29.98087 * 1 2 3 25 25 H 1.09007 * 109.46724 * 149.98125 * 1 2 3 26 26 H 1.08001 * 125.90234 * 179.97438 * 4 3 2 27 27 H 1.07999 * 126.04512 * 180.23353 * 5 4 3 28 28 H 0.96997 * 120.00034 * 245.00430 * 10 7 6 29 29 H 1.08999 * 109.47258 * 299.99964 * 13 11 10 30 30 H 1.08993 * 109.47094 * 59.99973 * 13 11 10 31 31 H 1.08999 * 109.47039 * 299.99941 * 14 13 11 32 32 H 1.09002 * 109.47223 * 59.99992 * 14 13 11 33 33 H 0.96993 * 119.99551 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1329 0.0000 4 6 3.5345 0.7323 -0.0006 5 6 3.5438 -0.6664 0.0041 6 6 2.2590 -1.0911 -0.0005 7 16 1.7194 -2.7685 0.0002 8 8 1.7415 -3.1976 -1.3543 9 8 0.5535 -2.8147 0.8112 10 7 2.8739 -3.6546 0.7903 11 6 3.1057 -3.4432 2.1011 12 8 2.4684 -2.6044 2.7021 13 6 4.1568 -4.2491 2.8200 14 6 4.2175 -3.8157 4.2860 15 6 5.2682 -4.6221 5.0050 16 1 5.8355 -5.3693 4.4700 17 6 5.5052 -4.4059 6.3460 18 7 4.8140 -3.4963 6.9977 19 14 6.8070 -5.4059 7.2375 20 1 7.4378 -6.3567 6.2870 21 1 7.8429 -4.4937 7.7852 22 1 6.1756 -6.1620 8.3487 23 1 -0.3634 -0.0004 1.0276 24 1 -0.3634 0.8901 -0.5135 25 1 -0.3633 -0.8899 -0.5142 26 1 4.4053 1.3712 -0.0011 27 1 4.4212 -1.2961 0.0084 28 1 3.3834 -4.3256 0.3097 29 1 3.9037 -5.3079 2.7647 30 1 5.1264 -4.0824 2.3509 31 1 4.4704 -2.7569 4.3416 32 1 3.2478 -3.9828 4.7548 33 1 4.9805 -3.3446 7.9411 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261214873.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:12 Heat of formation + Delta-G solvation = -62.934653 kcal Electronic energy + Delta-G solvation = -20736.984267 eV Core-core repulsion = 17311.792726 eV Total energy + Delta-G solvation = -3425.191542 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.077 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.35892 -41.21228 -38.65931 -37.44901 -35.73468 -35.58765 -34.45784 -32.96055 -31.74868 -27.95648 -27.93717 -24.46000 -23.57829 -22.55442 -21.95759 -20.84757 -19.30781 -19.17079 -18.74743 -17.88170 -17.00723 -16.89324 -16.52330 -16.44588 -16.28218 -15.56236 -15.17894 -14.96173 -14.42390 -14.35730 -13.97185 -13.92238 -13.76024 -13.52684 -13.41996 -13.25343 -12.89742 -12.84186 -12.42326 -12.24719 -11.97184 -11.88470 -11.69019 -11.33998 -11.12271 -10.97435 -10.53387 -9.97100 -8.14802 -6.27496 -1.27235 0.07640 1.01733 1.16005 1.40880 1.47035 1.47680 1.49926 1.60351 2.15642 2.45727 3.12782 3.20186 3.31630 3.48164 3.90853 4.01124 4.11461 4.19337 4.30877 4.45171 4.47756 4.55910 4.58752 5.07758 5.40012 5.50767 5.56015 5.66114 5.66578 5.89233 6.18886 6.24767 6.51390 6.93348 7.43191 8.97891 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.025743 B = 0.004191 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.402064 B = 6678.721746 C = 7091.256402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.322 5.322 3 N -0.283 5.283 4 C 0.033 3.967 5 C -0.168 4.168 6 C -0.499 4.499 7 S 2.721 3.279 8 O -0.938 6.938 9 O -0.953 6.953 10 N -1.026 6.026 11 C 0.538 3.462 12 O -0.526 6.526 13 C -0.120 4.120 14 C 0.031 3.969 15 C -0.536 4.536 16 H 0.082 0.918 17 C -0.006 4.006 18 N -0.939 5.939 19 Si 0.969 3.031 20 H -0.249 1.249 21 H -0.284 1.284 22 H -0.286 1.286 23 H 0.091 0.909 24 H 0.127 0.873 25 H 0.097 0.903 26 H 0.231 0.769 27 H 0.191 0.809 28 H 0.459 0.541 29 H 0.124 0.876 30 H 0.133 0.867 31 H -0.009 1.009 32 H -0.015 1.015 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.994 1.653 -18.779 18.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.107 5.107 3 N -0.108 5.108 4 C -0.151 4.151 5 C -0.200 4.200 6 C -0.709 4.709 7 S 2.807 3.193 8 O -0.927 6.927 9 O -0.943 6.943 10 N -0.799 5.799 11 C 0.327 3.673 12 O -0.398 6.398 13 C -0.161 4.161 14 C -0.006 4.006 15 C -0.574 4.574 16 H 0.101 0.899 17 C -0.203 4.203 18 N -0.579 5.579 19 Si 0.793 3.207 20 H -0.173 1.173 21 H -0.210 1.210 22 H -0.212 1.212 23 H 0.109 0.891 24 H 0.145 0.855 25 H 0.116 0.884 26 H 0.247 0.753 27 H 0.208 0.792 28 H 0.301 0.699 29 H 0.142 0.858 30 H 0.151 0.849 31 H 0.009 0.991 32 H 0.004 0.996 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.204 3.049 -18.550 19.263 hybrid contribution 1.437 -0.431 0.913 1.756 sum -2.767 2.617 -17.637 18.044 Atomic orbital electron populations 1.22535 0.71890 1.06709 1.05752 1.48442 1.07449 1.01533 1.53238 1.77199 1.03277 1.09127 1.21188 1.24765 0.95817 0.95391 0.99155 1.22074 0.95410 0.96789 1.05717 1.33295 1.01747 1.16606 1.19251 1.01501 0.72759 0.72210 0.72861 1.93675 1.85701 1.80166 1.33170 1.93636 1.45322 1.85792 1.69506 1.54599 1.55715 1.50456 1.19154 1.21641 0.83285 0.82235 0.80106 1.90888 1.48511 1.34516 1.65885 1.21905 0.97389 1.00831 0.96018 1.18831 0.95559 0.95514 0.90744 1.21750 1.19998 1.20661 0.95034 0.89946 1.26071 0.98743 0.96453 0.99078 1.70174 1.42790 1.35093 1.09883 0.85344 0.78335 0.78502 0.78481 1.17265 1.21019 1.21204 0.89091 0.85503 0.88419 0.75273 0.79155 0.69857 0.85799 0.84926 0.99071 0.99608 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.57 10.64 127.77 1.36 2.93 16 2 N -0.32 -9.25 4.01 -366.69 -1.47 -10.72 16 3 N -0.28 -8.13 12.58 -57.02 -0.72 -8.84 16 4 C 0.03 0.77 12.03 85.24 1.03 1.80 16 5 C -0.17 -4.04 10.67 21.99 0.23 -3.80 16 6 C -0.50 -13.89 6.50 83.54 0.54 -13.35 16 7 S 2.72 70.75 5.05 -56.49 -0.29 70.47 16 8 O -0.94 -24.16 18.02 -128.00 -2.31 -26.46 16 9 O -0.95 -31.46 15.63 -120.89 -1.89 -33.35 16 10 N -1.03 -22.28 5.63 -173.52 -0.98 -23.25 16 11 C 0.54 17.16 7.66 87.66 0.67 17.83 16 12 O -0.53 -22.47 14.85 13.29 0.20 -22.27 16 13 C -0.12 -3.89 5.64 29.85 0.17 -3.72 16 14 C 0.03 1.57 4.26 29.85 0.13 1.70 16 15 C -0.54 -27.98 9.11 25.60 0.23 -27.75 16 16 H 0.08 3.82 7.74 -2.91 -0.02 3.80 16 17 C -0.01 -0.33 5.46 84.66 0.46 0.13 16 18 N -0.94 -57.30 13.29 21.45 0.28 -57.01 16 19 Si 0.97 42.17 29.54 68.60 2.03 44.19 16 20 H -0.25 -9.84 7.11 99.48 0.71 -9.14 16 21 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.29 -12.44 7.11 99.48 0.71 -11.74 16 23 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 24 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.10 1.88 7.22 -2.38 -0.02 1.86 16 26 H 0.23 3.39 8.06 -2.91 -0.02 3.36 16 27 H 0.19 3.11 8.06 -2.91 -0.02 3.09 16 28 H 0.46 5.15 8.83 -96.75 -0.85 4.30 16 29 H 0.12 3.33 8.14 -2.39 -0.02 3.31 16 30 H 0.13 3.31 8.14 -2.39 -0.02 3.29 16 31 H -0.01 -0.52 8.10 -2.39 -0.02 -0.54 16 32 H -0.01 -0.84 8.10 -2.39 -0.02 -0.86 16 33 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -84.00 308.86 -0.02 -84.02 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: 0.29 Total: 7.47 kcal Atomic # 6 Polarization: -29.06 SS G_CDS: 4.82 Total: -24.24 kcal Atomic # 7 Polarization: -96.95 SS G_CDS: -2.88 Total: -99.83 kcal Atomic # 8 Polarization: -78.08 SS G_CDS: -4.00 Total: -82.08 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Atomic # 16 Polarization: 70.75 SS G_CDS: -0.29 Total: 70.47 kcal Total: -84.00 -0.02 -84.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261214873.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.084 kcal (2) G-P(sol) polarization free energy of solvation -83.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds