Wall clock time and date at job start Tue Mar 31 2020 02:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42108 * 108.57641 * 2 1 4 4 O 1.42091 * 108.57808 * 228.97329 * 2 1 3 5 5 C 1.81398 * 101.91929 * 114.48530 * 2 1 3 6 6 C 1.53004 * 109.47205 * 180.02562 * 5 2 1 7 7 N 1.46492 * 109.47197 * 180.02562 * 6 5 2 8 8 C 1.35065 * 125.97063 * 124.99927 * 7 6 5 9 9 C 1.35179 * 107.90156 * 179.73705 * 8 7 6 10 10 C 1.40520 * 107.87678 * 0.26458 * 9 8 7 11 11 N 1.39678 * 125.98644 * 179.97438 * 10 9 8 12 12 C 1.34772 * 119.99957 * 359.97438 * 11 10 9 13 13 O 1.21768 * 120.00260 * 0.02562 * 12 11 10 14 14 C 1.46117 * 120.00003 * 179.97438 * 12 11 10 15 15 H 1.08005 * 119.99585 * 0.02562 * 14 12 11 16 16 C 1.40123 * 120.00089 * 179.97438 * 14 12 11 17 17 N 1.30635 * 120.00233 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 120.00056 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46935 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47103 * 120.00059 * 18 16 14 21 21 H 1.48502 * 109.47571 * 240.00241 * 18 16 14 22 22 N 1.31413 * 108.02388 * 359.97438 * 10 9 8 23 23 H 1.09004 * 109.47021 * 305.51748 * 1 2 3 24 24 H 1.09003 * 109.46744 * 65.51455 * 1 2 3 25 25 H 1.08991 * 109.47318 * 185.51302 * 1 2 3 26 26 H 1.08996 * 109.47318 * 60.00120 * 5 2 1 27 27 H 1.09001 * 109.47529 * 300.00311 * 5 2 1 28 28 H 1.08996 * 109.46930 * 59.99827 * 6 5 2 29 29 H 1.09002 * 109.46638 * 300.00237 * 6 5 2 30 30 H 1.08002 * 126.05131 * 0.02562 * 8 7 6 31 31 H 1.07999 * 126.05688 * 180.28563 * 9 8 7 32 32 H 0.96999 * 119.99580 * 180.02562 * 11 10 9 33 33 H 0.97003 * 120.00443 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.7055 -0.8184 1.7985 7 7 4.0080 -1.4130 3.1027 8 6 4.7858 -2.4957 3.3198 9 6 4.8204 -2.7221 4.6520 10 6 4.0284 -1.7437 5.2765 11 7 3.8013 -1.6253 6.6496 12 6 4.3666 -2.5009 7.5041 13 8 5.0757 -3.3949 7.0792 14 6 4.1295 -2.3766 8.9406 15 1 3.5009 -1.5833 9.3175 16 6 4.7168 -3.2873 9.8290 17 7 5.4767 -4.2471 9.3730 18 14 4.4131 -3.1289 11.6653 19 1 3.5232 -1.9680 11.9215 20 1 3.7674 -4.3677 12.1689 21 1 5.7069 -2.9252 12.3653 22 7 3.5388 -0.9598 4.3424 23 1 -0.3633 0.5970 0.8365 24 1 -0.3633 0.4260 -0.9353 25 1 -0.3633 -1.0228 0.0987 26 1 1.7610 -1.7369 1.6665 27 1 1.7609 -0.1171 2.4043 28 1 4.1327 0.1830 1.7474 29 1 4.1335 -1.4367 1.0095 30 1 5.2942 -3.0751 2.5632 31 1 5.3613 -3.5142 5.1483 32 1 3.2361 -0.9133 6.9881 33 1 5.8836 -4.8773 9.9881 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001586702886.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:33:40 Heat of formation + Delta-G solvation = -18.039543 kcal Electronic energy + Delta-G solvation = -19815.900689 eV Core-core repulsion = 16392.655945 eV Total energy + Delta-G solvation = -3423.244743 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.077 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.56588 -37.51753 -37.33460 -36.40084 -34.61663 -33.00958 -32.37774 -30.11329 -29.45252 -28.80656 -26.50620 -23.78520 -21.39368 -20.57487 -19.27544 -19.02574 -17.43165 -17.18680 -16.61617 -16.39082 -16.22170 -15.48944 -15.24853 -14.83574 -14.25584 -14.01439 -13.69141 -13.60512 -13.17969 -12.82860 -12.70720 -12.43796 -12.34457 -12.31254 -12.16258 -11.74386 -11.46596 -11.33480 -11.16244 -10.99411 -10.67880 -10.32329 -10.00086 -9.77884 -8.97413 -8.13552 -7.75905 -7.25684 -6.37808 -4.84721 -0.43658 2.31888 2.38149 2.76947 3.05081 3.14179 3.18676 3.26157 3.60031 3.64393 3.98023 4.17271 4.31646 4.38871 4.49141 4.52284 4.61463 4.86034 5.13027 5.24026 5.26163 5.47783 5.65481 6.01661 6.42499 6.61117 7.13967 7.28367 7.51506 7.61386 8.02326 8.07489 8.38763 8.83051 9.26767 10.35611 10.53858 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.044764 B = 0.002913 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.355249 B = 9611.108290 C = 9963.740929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.652 4.652 2 S 2.428 3.572 3 O -0.936 6.936 4 O -0.939 6.939 5 C -0.628 4.628 6 C 0.164 3.836 7 N -0.389 5.389 8 C 0.042 3.958 9 C -0.255 4.255 10 C 0.333 3.667 11 N -0.657 5.657 12 C 0.550 3.450 13 O -0.554 6.554 14 C -0.534 4.534 15 H 0.074 0.926 16 C 0.087 3.913 17 N -0.758 5.758 18 Si 0.915 3.085 19 H -0.262 1.262 20 H -0.275 1.275 21 H -0.274 1.274 22 N -0.361 5.361 23 H 0.130 0.870 24 H 0.130 0.870 25 H 0.129 0.871 26 H 0.137 0.863 27 H 0.147 0.853 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.168 0.832 31 H 0.176 0.824 32 H 0.397 0.603 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.701 5.985 -15.195 18.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.802 4.802 2 S 2.608 3.392 3 O -0.933 6.933 4 O -0.936 6.936 5 C -0.757 4.757 6 C 0.040 3.960 7 N -0.175 5.175 8 C -0.100 4.100 9 C -0.285 4.285 10 C 0.076 3.924 11 N -0.306 5.306 12 C 0.356 3.644 13 O -0.435 6.435 14 C -0.570 4.570 15 H 0.093 0.907 16 C -0.135 4.135 17 N -0.387 5.387 18 Si 0.739 3.261 19 H -0.186 1.186 20 H -0.200 1.200 21 H -0.200 1.200 22 N -0.194 5.194 23 H 0.149 0.851 24 H 0.149 0.851 25 H 0.148 0.852 26 H 0.156 0.844 27 H 0.165 0.835 28 H 0.110 0.890 29 H 0.123 0.877 30 H 0.185 0.815 31 H 0.193 0.807 32 H 0.230 0.770 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.195 6.461 -16.394 19.434 hybrid contribution -0.655 -0.561 1.816 2.010 sum -8.850 5.900 -14.578 18.046 Atomic orbital electron populations 1.30227 1.26280 1.11816 1.11922 1.07651 0.78602 0.75748 0.77157 1.93622 1.79047 1.34299 1.86331 1.93610 1.79161 1.67078 1.53771 1.30760 1.05897 1.15168 1.23866 1.20968 0.91169 1.00971 0.82903 1.47713 1.41159 1.24329 1.04278 1.22562 0.97822 0.91496 0.98158 1.22169 1.09107 1.05820 0.91448 1.19607 0.93511 0.92800 0.86508 1.43581 1.52415 1.34349 1.00278 1.18402 0.79625 0.80137 0.86268 1.90537 1.40554 1.34708 1.77680 1.20810 1.32344 1.15210 0.88685 0.90747 1.25736 0.93150 0.93801 1.00787 1.69987 1.21751 1.10876 1.36038 0.86191 0.78888 0.79043 0.81971 1.18594 1.20000 1.19972 1.77312 1.28897 1.25246 0.87913 0.85083 0.85142 0.85203 0.84447 0.83510 0.89003 0.87739 0.81463 0.80676 0.77023 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.56 10.62 101.05 1.07 -1.49 16 2 S 2.43 17.23 5.36 -107.50 -0.58 16.65 16 3 O -0.94 -10.24 18.10 -57.83 -1.05 -11.29 16 4 O -0.94 -9.73 18.10 -57.83 -1.05 -10.78 16 5 C -0.63 -5.18 5.99 37.16 0.22 -4.96 16 6 C 0.16 1.83 6.51 -4.04 -0.03 1.80 16 7 N -0.39 -6.30 3.68 -61.37 -0.23 -6.53 16 8 C 0.04 0.71 11.43 -17.22 -0.20 0.51 16 9 C -0.25 -5.50 9.60 -39.81 -0.38 -5.88 16 10 C 0.33 7.46 8.10 -154.66 -1.25 6.21 16 11 N -0.66 -15.38 5.43 -12.51 -0.07 -15.45 16 12 C 0.55 15.15 7.70 -13.10 -0.10 15.05 16 13 O -0.55 -16.84 12.13 5.13 0.06 -16.78 16 14 C -0.53 -14.38 9.53 -35.72 -0.34 -14.72 16 15 H 0.07 1.82 7.85 -52.48 -0.41 1.41 16 16 C 0.09 2.29 5.50 -17.35 -0.10 2.20 16 17 N -0.76 -21.52 11.82 55.55 0.66 -20.87 16 18 Si 0.91 19.16 29.56 -169.99 -5.02 14.14 16 19 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 20 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 21 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 22 N -0.36 -7.10 12.44 31.39 0.39 -6.71 16 23 H 0.13 0.36 8.14 -51.92 -0.42 -0.06 16 24 H 0.13 0.41 8.14 -51.92 -0.42 -0.01 16 25 H 0.13 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.14 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.15 1.22 8.14 -51.92 -0.42 0.80 16 28 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.10 0.87 8.07 -51.93 -0.42 0.45 16 30 H 0.17 2.04 8.06 -52.49 -0.42 1.62 16 31 H 0.18 4.26 5.90 -52.49 -0.31 3.95 16 32 H 0.40 8.16 8.80 -40.82 -0.36 7.80 16 33 H 0.27 6.96 8.29 -40.82 -0.34 6.62 16 LS Contribution 308.73 15.07 4.65 4.65 Total: -1.00 -39.16 308.73 -6.92 -46.08 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -3.59 Total: 8.15 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -1.10 Total: -1.28 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: 0.75 Total: -49.55 kcal Atomic # 8 Polarization: -36.81 SS G_CDS: -2.03 Total: -38.84 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.02 Total: 14.14 kcal Atomic # 16 Polarization: 17.23 SS G_CDS: -0.58 Total: 16.65 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -39.16 -6.92 -46.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001586702886.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.038 kcal (2) G-P(sol) polarization free energy of solvation -39.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds