Wall clock time and date at job start Tue Mar 31 2020 02:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42108 * 108.57641 * 2 1 4 4 O 1.42091 * 108.57808 * 228.97329 * 2 1 3 5 5 C 1.81398 * 101.91929 * 114.48530 * 2 1 3 6 6 C 1.53004 * 109.47205 * 180.02562 * 5 2 1 7 7 N 1.46492 * 109.47197 * 180.02562 * 6 5 2 8 8 C 1.35065 * 125.97063 * 124.99927 * 7 6 5 9 9 C 1.35179 * 107.90156 * 179.73705 * 8 7 6 10 10 C 1.40520 * 107.87678 * 0.26458 * 9 8 7 11 11 N 1.39678 * 125.98644 * 179.97438 * 10 9 8 12 12 C 1.34772 * 119.99957 * 359.97438 * 11 10 9 13 13 O 1.21768 * 120.00260 * 0.02562 * 12 11 10 14 14 C 1.46117 * 120.00003 * 179.97438 * 12 11 10 15 15 H 1.08005 * 119.99585 * 0.02562 * 14 12 11 16 16 C 1.40123 * 120.00089 * 179.97438 * 14 12 11 17 17 N 1.30635 * 120.00233 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 120.00056 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46935 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47103 * 120.00059 * 18 16 14 21 21 H 1.48502 * 109.47571 * 240.00241 * 18 16 14 22 22 N 1.31413 * 108.02388 * 359.97438 * 10 9 8 23 23 H 1.09004 * 109.47021 * 305.51748 * 1 2 3 24 24 H 1.09003 * 109.46744 * 65.51455 * 1 2 3 25 25 H 1.08991 * 109.47318 * 185.51302 * 1 2 3 26 26 H 1.08996 * 109.47318 * 60.00120 * 5 2 1 27 27 H 1.09001 * 109.47529 * 300.00311 * 5 2 1 28 28 H 1.08996 * 109.46930 * 59.99827 * 6 5 2 29 29 H 1.09002 * 109.46638 * 300.00237 * 6 5 2 30 30 H 1.08002 * 126.05131 * 0.02562 * 8 7 6 31 31 H 1.07999 * 126.05688 * 180.28563 * 9 8 7 32 32 H 0.96999 * 119.99580 * 180.02562 * 11 10 9 33 33 H 0.97003 * 120.00443 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.7055 -0.8184 1.7985 7 7 4.0080 -1.4130 3.1027 8 6 4.7858 -2.4957 3.3198 9 6 4.8204 -2.7221 4.6520 10 6 4.0284 -1.7437 5.2765 11 7 3.8013 -1.6253 6.6496 12 6 4.3666 -2.5009 7.5041 13 8 5.0757 -3.3949 7.0792 14 6 4.1295 -2.3766 8.9406 15 1 3.5009 -1.5833 9.3175 16 6 4.7168 -3.2873 9.8290 17 7 5.4767 -4.2471 9.3730 18 14 4.4131 -3.1289 11.6653 19 1 3.5232 -1.9680 11.9215 20 1 3.7674 -4.3677 12.1689 21 1 5.7069 -2.9252 12.3653 22 7 3.5388 -0.9598 4.3424 23 1 -0.3633 0.5970 0.8365 24 1 -0.3633 0.4260 -0.9353 25 1 -0.3633 -1.0228 0.0987 26 1 1.7610 -1.7369 1.6665 27 1 1.7609 -0.1171 2.4043 28 1 4.1327 0.1830 1.7474 29 1 4.1335 -1.4367 1.0095 30 1 5.2942 -3.0751 2.5632 31 1 5.3613 -3.5142 5.1483 32 1 3.2361 -0.9133 6.9881 33 1 5.8836 -4.8773 9.9881 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001586702886.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:33:39 Heat of formation + Delta-G solvation = -50.426890 kcal Electronic energy + Delta-G solvation = -19817.305110 eV Core-core repulsion = 16392.655945 eV Total energy + Delta-G solvation = -3424.649164 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.077 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.07511 -39.45573 -38.03997 -37.11349 -35.98386 -34.74731 -34.23316 -31.04182 -30.54720 -30.02148 -28.43049 -24.93121 -23.15070 -21.99825 -20.83280 -19.82239 -19.18146 -18.38685 -17.52214 -17.45937 -17.12463 -17.07282 -16.49395 -16.10718 -15.92657 -15.32562 -14.68227 -14.63880 -14.17996 -14.02283 -13.92646 -13.71629 -13.54344 -13.19594 -13.16642 -13.07018 -12.84396 -12.73370 -12.63821 -12.11566 -11.97031 -11.71059 -11.56265 -11.39648 -10.94002 -9.85823 -9.68652 -8.93406 -8.36861 -6.94612 -1.01004 0.92620 1.40769 1.41399 1.49315 1.61789 1.79587 1.89458 2.23890 2.53598 2.62123 2.90827 3.09488 3.41095 3.59526 3.64458 3.96739 4.09685 4.12488 4.18407 4.31488 4.57031 4.84098 4.89123 4.99912 5.01684 5.26070 5.48602 5.68888 6.08618 6.21425 6.29266 6.68381 6.79842 7.41477 8.33249 8.56965 Molecular weight = 287.08amu Principal moments of inertia in cm(-1) A = 0.044764 B = 0.002913 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.355249 B = 9611.108290 C = 9963.740929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.635 4.635 2 S 2.451 3.549 3 O -0.978 6.978 4 O -0.972 6.972 5 C -0.630 4.630 6 C 0.138 3.862 7 N -0.373 5.373 8 C 0.079 3.921 9 C -0.308 4.308 10 C 0.300 3.700 11 N -0.655 5.655 12 C 0.535 3.465 13 O -0.594 6.594 14 C -0.560 4.560 15 H 0.094 0.906 16 C 0.031 3.969 17 N -0.810 5.810 18 Si 1.004 2.996 19 H -0.247 1.247 20 H -0.267 1.267 21 H -0.268 1.268 22 N -0.361 5.361 23 H 0.149 0.851 24 H 0.145 0.855 25 H 0.152 0.848 26 H 0.153 0.847 27 H 0.146 0.854 28 H 0.099 0.901 29 H 0.139 0.861 30 H 0.219 0.781 31 H 0.139 0.861 32 H 0.407 0.593 33 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.544 6.802 -16.033 20.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.788 4.788 2 S 2.635 3.365 3 O -0.975 6.975 4 O -0.970 6.970 5 C -0.757 4.757 6 C 0.017 3.983 7 N -0.158 5.158 8 C -0.067 4.067 9 C -0.339 4.339 10 C 0.044 3.956 11 N -0.304 5.304 12 C 0.342 3.658 13 O -0.478 6.478 14 C -0.596 4.596 15 H 0.112 0.888 16 C -0.185 4.185 17 N -0.439 5.439 18 Si 0.823 3.177 19 H -0.170 1.170 20 H -0.192 1.192 21 H -0.193 1.193 22 N -0.194 5.194 23 H 0.167 0.833 24 H 0.163 0.837 25 H 0.170 0.830 26 H 0.171 0.829 27 H 0.164 0.836 28 H 0.117 0.883 29 H 0.157 0.843 30 H 0.236 0.764 31 H 0.157 0.843 32 H 0.242 0.758 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.042 7.340 -17.272 21.284 hybrid contribution -0.157 -0.756 1.815 1.973 sum -10.199 6.584 -15.456 19.653 Atomic orbital electron populations 1.30075 1.21198 1.13969 1.13607 1.06825 0.80112 0.73916 0.75633 1.93569 1.81181 1.36235 1.86559 1.93565 1.81131 1.67591 1.54667 1.30768 1.03711 1.16420 1.24816 1.21615 0.93841 1.01938 0.80923 1.48176 1.39286 1.23453 1.04848 1.23057 0.95737 0.90675 0.97248 1.21937 1.11624 1.06559 0.93770 1.19760 0.95245 0.94256 0.86304 1.43120 1.52336 1.34004 1.00980 1.18762 0.79511 0.80268 0.87307 1.90517 1.42262 1.36426 1.78579 1.21339 1.33106 1.16269 0.88924 0.88840 1.26987 0.92111 0.92752 1.06699 1.70133 1.23058 1.12114 1.38578 0.84875 0.79138 0.79643 0.74082 1.16978 1.19171 1.19271 1.77221 1.28630 1.24760 0.88789 0.83291 0.83700 0.82963 0.82854 0.83572 0.88298 0.84327 0.76434 0.84304 0.75839 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -2.45 10.62 113.37 1.20 -1.25 16 2 S 2.45 28.96 5.36 -56.49 -0.30 28.66 16 3 O -0.98 -20.02 18.10 -127.37 -2.31 -22.33 16 4 O -0.97 -18.06 18.10 -127.37 -2.30 -20.36 16 5 C -0.63 -8.73 5.99 71.98 0.43 -8.30 16 6 C 0.14 2.72 6.51 86.38 0.56 3.28 16 7 N -0.37 -11.42 3.68 -348.09 -1.28 -12.70 16 8 C 0.08 2.52 11.43 83.49 0.95 3.48 16 9 C -0.31 -13.78 9.60 22.12 0.21 -13.56 16 10 C 0.30 13.84 8.10 133.46 1.08 14.92 16 11 N -0.66 -31.97 5.43 -311.70 -1.69 -33.66 16 12 C 0.54 30.96 7.70 86.29 0.66 31.62 16 13 O -0.59 -38.37 12.13 -4.56 -0.06 -38.43 16 14 C -0.56 -30.92 9.53 24.77 0.24 -30.68 16 15 H 0.09 4.60 7.85 -2.91 -0.02 4.58 16 16 C 0.03 1.67 5.50 85.33 0.47 2.14 16 17 N -0.81 -47.60 11.82 21.85 0.26 -47.34 16 18 Si 1.00 39.31 29.56 68.60 2.03 41.34 16 19 H -0.25 -8.95 7.11 99.48 0.71 -8.24 16 20 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 21 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 22 N -0.36 -14.07 12.44 -54.59 -0.68 -14.75 16 23 H 0.15 0.18 8.14 -2.39 -0.02 0.16 16 24 H 0.14 0.32 8.14 -2.39 -0.02 0.30 16 25 H 0.15 0.04 8.14 -2.40 -0.02 0.02 16 26 H 0.15 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.15 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.14 1.81 8.07 -2.39 -0.02 1.79 16 30 H 0.22 4.56 8.06 -2.91 -0.02 4.54 16 31 H 0.14 7.28 5.90 -2.91 -0.02 7.26 16 32 H 0.41 17.30 8.80 -92.71 -0.82 16.49 16 33 H 0.28 14.73 8.29 -92.71 -0.77 13.96 16 Total: -1.00 -90.10 308.73 -0.18 -90.28 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: 0.34 Total: 27.65 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: 5.82 Total: 1.65 kcal Atomic # 7 Polarization: -105.06 SS G_CDS: -3.39 Total: -108.45 kcal Atomic # 8 Polarization: -76.45 SS G_CDS: -4.67 Total: -81.12 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 2.03 Total: 41.34 kcal Atomic # 16 Polarization: 28.96 SS G_CDS: -0.30 Total: 28.66 kcal Total: -90.10 -0.18 -90.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001586702886.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.850 kcal (2) G-P(sol) polarization free energy of solvation -90.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds