Wall clock time and date at job start Tue Mar 31 2020 04:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20830 * 119.99485 * 2 1 4 4 O 1.34290 * 120.00335 * 179.97438 * 2 1 3 5 5 C 1.35777 * 117.00275 * 183.85603 * 4 2 1 6 6 C 1.38986 * 119.90059 * 78.70930 * 5 4 2 7 7 C 1.37715 * 120.09011 * 180.25698 * 6 5 4 8 8 C 1.39780 * 119.90585 * 359.45452 * 7 6 5 9 9 C 1.47527 * 120.09420 * 180.29812 * 8 7 6 10 10 O 1.21620 * 120.00177 * 320.88497 * 9 8 7 11 11 N 1.34776 * 120.00014 * 140.88830 * 9 8 7 12 12 C 1.36898 * 119.99995 * 186.47284 * 11 9 8 13 13 H 1.08004 * 119.99791 * 345.90044 * 12 11 9 14 14 C 1.39028 * 120.00093 * 165.89779 * 12 11 9 15 15 N 1.31375 * 119.99689 * 35.94191 * 14 12 11 16 16 Si 1.86798 * 120.00113 * 215.93784 * 14 12 11 17 17 H 1.48502 * 109.46995 * 60.00191 * 16 14 12 18 18 H 1.48500 * 109.47127 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47337 * 300.00108 * 16 14 12 20 20 C 1.46497 * 120.00396 * 6.47503 * 11 9 8 21 21 C 1.47200 * 109.47192 * 108.73241 * 20 11 9 22 22 N 8.13939 * 149.06271 * 244.54115 * 2 1 3 23 23 C 1.39772 * 119.80871 * 0.27468 * 8 7 6 24 24 C 1.37714 * 119.90663 * 359.97438 * 23 8 7 25 25 H 1.09000 * 109.47299 * 269.99420 * 1 2 3 26 26 H 1.08997 * 109.47712 * 30.00280 * 1 2 3 27 27 H 1.09011 * 109.46594 * 150.00007 * 1 2 3 28 28 H 1.07995 * 119.95372 * 0.02562 * 6 5 4 29 29 H 1.07996 * 120.04710 * 179.72411 * 7 6 5 30 30 H 0.96997 * 119.99784 * 179.97438 * 15 14 12 31 31 H 1.08999 * 109.47587 * 228.73937 * 20 11 9 32 32 H 1.09008 * 109.46727 * 348.74136 * 20 11 9 33 33 H 1.08001 * 120.04577 * 180.02562 * 23 8 7 34 34 H 1.08004 * 119.95023 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1111 1.0465 0.0000 4 8 2.1785 -1.1629 0.0005 5 6 3.5321 -1.0932 0.0818 6 6 4.1414 -0.8614 1.3093 7 6 5.5137 -0.7846 1.3954 8 6 6.2944 -0.9516 0.2480 9 6 7.7651 -0.8768 0.3366 10 8 8.2895 -0.0548 1.0637 11 7 8.5276 -1.7192 -0.3882 12 6 9.8845 -1.7409 -0.2082 13 1 10.3701 -0.9432 0.3343 14 6 10.6374 -2.7898 -0.7238 15 7 10.3079 -3.3314 -1.8744 16 14 12.1177 -3.4289 0.2195 17 1 11.6813 -3.9210 1.5510 18 1 12.7445 -4.5418 -0.5379 19 1 13.1035 -2.3324 0.3958 20 6 7.9044 -2.6117 -1.3686 21 6 8.2340 -2.1537 -2.7282 22 7 8.4884 -1.7987 -3.7781 23 6 5.6776 -1.1902 -0.9834 24 6 4.3045 -1.2603 -1.0614 25 1 -0.3634 -0.0001 1.0277 26 1 -0.3634 0.8899 -0.5138 27 1 -0.3633 -0.8901 -0.5139 28 1 3.5377 -0.7375 2.1962 29 1 5.9862 -0.6000 2.3488 30 1 10.8334 -4.0629 -2.2343 31 1 8.2781 -3.6256 -1.2262 32 1 6.8228 -2.6008 -1.2339 33 1 6.2771 -1.3202 -1.8723 34 1 3.8271 -1.4450 -2.0125 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000060656.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:30:42 Heat of formation + Delta-G solvation = -18.885263 kcal Electronic energy + Delta-G solvation = -22008.893849 eV Core-core repulsion = 18488.282914 eV Total energy + Delta-G solvation = -3520.610936 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.32950 -39.67034 -37.91101 -36.57310 -35.90622 -34.31691 -32.33683 -31.09068 -30.93424 -29.67140 -27.56277 -25.43755 -23.58108 -22.72977 -21.29324 -19.76542 -18.31467 -18.19279 -17.12136 -16.96052 -16.46832 -16.25303 -15.32455 -14.81794 -14.72575 -14.34444 -14.12562 -13.67622 -13.61504 -13.17721 -13.09744 -12.90924 -12.74972 -12.38349 -12.05361 -11.95185 -11.68749 -11.65467 -11.32236 -11.26323 -10.82212 -10.69906 -10.59525 -10.44807 -10.33421 -9.07673 -8.85758 -8.85412 -8.42021 -8.33707 -6.79483 -4.00287 0.93456 1.44861 1.95345 2.63779 3.05984 3.16959 3.20047 3.42400 3.66560 3.86856 4.01984 4.12266 4.49499 4.54711 4.76641 4.85333 4.91453 4.97128 4.99130 5.25635 5.31750 5.33590 5.44942 5.59690 5.76238 5.90638 6.07309 6.25916 6.37973 6.42983 6.47966 6.60870 6.91779 7.29081 7.70081 7.78533 8.15326 8.72972 8.86264 9.04170 9.62184 10.25912 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.029457 B = 0.004125 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.315779 B = 6786.714469 C = 7313.974594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.451 3.549 3 O -0.492 6.492 4 O -0.294 6.294 5 C 0.076 3.924 6 C -0.123 4.123 7 C -0.062 4.062 8 C -0.086 4.086 9 C 0.477 3.523 10 O -0.571 6.571 11 N -0.424 5.424 12 C -0.330 4.330 13 H 0.116 0.884 14 C 0.050 3.950 15 N -0.846 5.846 16 Si 0.918 3.082 17 H -0.268 1.268 18 H -0.284 1.284 19 H -0.270 1.270 20 C 0.188 3.812 21 C 0.252 3.748 22 N -0.467 5.467 23 C -0.102 4.102 24 C -0.117 4.117 25 H 0.106 0.894 26 H 0.103 0.897 27 H 0.095 0.905 28 H 0.128 0.872 29 H 0.139 0.861 30 H 0.279 0.721 31 H 0.121 0.879 32 H 0.108 0.892 33 H 0.142 0.858 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.666 -2.312 3.790 18.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.294 3.706 3 O -0.377 6.377 4 O -0.210 6.210 5 C 0.035 3.965 6 C -0.142 4.142 7 C -0.082 4.082 8 C -0.089 4.089 9 C 0.267 3.733 10 O -0.455 6.455 11 N -0.142 5.142 12 C -0.456 4.456 13 H 0.134 0.866 14 C -0.158 4.158 15 N -0.482 5.482 16 Si 0.743 3.257 17 H -0.194 1.194 18 H -0.209 1.209 19 H -0.195 1.195 20 C 0.062 3.938 21 C -0.066 4.066 22 N -0.147 5.147 23 C -0.121 4.121 24 C -0.136 4.136 25 H 0.124 0.876 26 H 0.122 0.878 27 H 0.114 0.886 28 H 0.146 0.854 29 H 0.157 0.843 30 H 0.090 0.910 31 H 0.138 0.862 32 H 0.125 0.875 33 H 0.159 0.841 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -16.702 -1.221 2.427 16.921 hybrid contribution 0.836 -0.612 0.570 1.183 sum -15.865 -1.834 2.997 16.250 Atomic orbital electron populations 1.21614 0.86440 1.06022 1.05920 1.24310 0.92064 0.81635 0.72562 1.90761 1.70618 1.32578 1.43790 1.84581 1.18257 1.34672 1.83462 1.18575 0.80027 1.04044 0.93893 1.21123 0.95244 1.01196 0.96619 1.21023 0.91923 0.96561 0.98668 1.20376 0.95161 0.99633 0.93779 1.17622 0.85102 0.84961 0.85574 1.90661 1.73497 1.37591 1.43795 1.43624 1.07128 1.33025 1.30441 1.19651 0.81031 1.08705 1.36186 0.86607 1.25332 0.99921 0.96134 0.94404 1.69968 1.41246 1.24100 1.12844 0.86128 0.80499 0.78704 0.80383 1.19358 1.20928 1.19510 1.19682 0.98192 0.97106 0.78841 1.28858 0.91142 0.92383 0.94202 1.80940 1.10448 1.09615 1.13716 1.21554 0.93921 0.98587 0.98059 1.21013 0.93620 1.01608 0.97344 0.87586 0.87801 0.88586 0.85391 0.84307 0.90972 0.86155 0.87531 0.84061 0.84990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 10.41 36.01 0.37 -0.41 16 2 C 0.45 5.11 7.94 36.01 0.29 5.39 16 3 O -0.49 -7.67 16.77 -18.75 -0.31 -7.99 16 4 O -0.29 -3.62 10.01 -23.22 -0.23 -3.85 16 5 C 0.08 1.10 5.03 -39.03 -0.20 0.90 16 6 C -0.12 -1.78 9.78 -39.50 -0.39 -2.17 16 7 C -0.06 -1.03 9.62 -39.20 -0.38 -1.41 16 8 C -0.09 -1.61 5.40 -104.96 -0.57 -2.18 16 9 C 0.48 11.05 7.29 -12.47 -0.09 10.96 16 10 O -0.57 -15.19 16.53 5.26 0.09 -15.10 16 11 N -0.42 -9.95 2.68 -119.12 -0.32 -10.27 16 12 C -0.33 -8.50 9.10 -15.00 -0.14 -8.63 16 13 H 0.12 3.19 7.42 -52.48 -0.39 2.80 16 14 C 0.05 1.20 5.03 -17.45 -0.09 1.11 16 15 N -0.85 -20.46 8.97 55.50 0.50 -19.96 16 16 Si 0.92 19.16 29.67 -169.99 -5.04 14.11 16 17 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 18 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 19 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 20 C 0.19 3.77 4.80 -6.83 -0.03 3.74 16 21 C 0.25 5.61 11.71 -20.72 -0.24 5.37 16 22 N -0.47 -11.16 18.54 42.20 0.78 -10.37 16 23 C -0.10 -1.70 7.34 -39.20 -0.29 -1.98 16 24 C -0.12 -1.71 9.97 -39.50 -0.39 -2.10 16 25 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.10 0.35 8.14 -51.92 -0.42 -0.07 16 28 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 29 H 0.14 2.20 8.05 -52.49 -0.42 1.78 16 30 H 0.28 6.46 8.31 -40.82 -0.34 6.12 16 31 H 0.12 2.42 6.57 -51.93 -0.34 2.08 16 32 H 0.11 1.77 3.79 -51.92 -0.20 1.58 16 33 H 0.14 2.38 4.66 -52.49 -0.24 2.14 16 34 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 LS Contribution 307.27 15.07 4.63 4.63 Total: -1.00 -32.53 307.27 -4.89 -37.42 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -2.84 Total: 2.79 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: -2.14 Total: 8.59 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.96 Total: -40.60 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.46 Total: -26.94 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.04 Total: 14.11 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.53 -4.89 -37.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000060656.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.537 kcal (2) G-P(sol) polarization free energy of solvation -32.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds