Wall clock time and date at job start Tue Mar 31 2020 03:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50704 * 120.00164 * 2 1 4 4 N 1.46491 * 109.47365 * 124.99990 * 3 2 1 5 5 C 1.36669 * 119.78486 * 90.00139 * 4 3 2 6 6 S 1.76196 * 118.45981 * 359.97438 * 5 4 3 7 7 C 1.76204 * 99.99862 * 180.02562 * 6 5 4 8 8 H 1.08004 * 119.99826 * 0.02562 * 7 6 5 9 9 C 1.38804 * 120.00184 * 180.02562 * 7 6 5 10 10 N 1.31522 * 119.99672 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 119.99907 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47208 * 60.00182 * 11 9 7 13 13 H 1.48503 * 109.46991 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47489 * 299.99548 * 11 9 7 15 15 N 1.30957 * 123.07412 * 180.02562 * 5 4 3 16 16 C 1.34764 * 121.65303 * 359.97053 * 15 5 4 17 17 C 1.39838 * 121.54360 * 180.02562 * 16 15 5 18 18 C 1.36608 * 119.80489 * 179.97438 * 17 16 15 19 19 C 1.38925 * 120.97034 * 359.97438 * 18 17 16 20 20 C 1.37783 * 120.59500 * 0.02562 * 19 18 17 21 21 C 1.39386 * 119.40704 * 359.97438 * 20 19 18 22 22 C 1.35343 * 119.79024 * 269.98222 * 4 3 2 23 23 O 1.21724 * 121.25832 * 0.02562 * 22 4 3 24 24 H 1.07997 * 120.00047 * 179.97438 * 1 2 3 25 25 H 1.07998 * 120.00241 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.00241 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.46935 * 4.99905 * 3 2 1 28 28 H 1.09000 * 109.47260 * 245.00295 * 3 2 1 29 29 H 0.97002 * 120.00285 * 180.02562 * 10 9 7 30 30 H 1.07997 * 120.10062 * 359.97438 * 17 16 15 31 31 H 1.08001 * 119.51421 * 180.28620 * 18 17 16 32 32 H 1.07997 * 119.69806 * 180.02562 * 19 18 17 33 33 H 1.07995 * 120.29822 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1313 5 6 4.2663 0.8586 0.9753 6 16 4.7401 0.2273 -0.6000 7 6 6.4070 -0.2297 -0.2577 8 1 6.8184 -0.0726 0.7285 9 6 7.1915 -0.7915 -1.2555 10 7 6.6904 -0.9832 -2.4563 11 14 8.9584 -1.2766 -0.8924 12 1 8.9806 -2.2888 0.1941 13 1 9.5755 -1.8502 -2.1153 14 1 9.7237 -0.0772 -0.4672 15 7 5.1496 0.8513 1.9420 16 6 4.8561 1.3179 3.1718 17 6 5.8013 1.3095 4.2023 18 6 5.4657 1.7919 5.4355 19 6 4.1946 2.2940 5.6850 20 6 3.2414 2.3158 4.6903 21 6 3.5621 1.8286 3.4244 22 6 2.5876 1.8257 2.3243 23 8 1.4578 2.2510 2.4802 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3585 2.1317 0.0896 28 1 2.6213 1.4026 -0.9314 29 1 7.2384 -1.3762 -3.1536 30 1 6.7938 0.9228 4.0238 31 1 6.2008 1.7875 6.2267 32 1 3.9515 2.6706 6.6676 33 1 2.2547 2.7068 4.8897 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001749539.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:01 Heat of formation + Delta-G solvation = 29.885429 kcal Electronic energy + Delta-G solvation = -19809.222186 eV Core-core repulsion = 16733.478978 eV Total energy + Delta-G solvation = -3075.743209 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.93413 -38.17856 -36.86741 -34.95513 -32.92333 -32.49705 -30.88808 -29.44679 -26.70707 -25.86170 -24.39282 -23.22929 -21.46194 -19.96020 -19.06630 -18.28098 -17.60550 -16.83024 -15.71350 -15.26379 -15.16032 -15.08275 -14.63309 -14.29287 -13.92454 -13.49232 -13.38590 -13.14719 -12.84607 -12.27566 -11.84162 -11.76699 -11.48688 -11.30773 -11.25886 -11.21784 -11.11373 -10.43755 -9.80978 -9.60240 -9.50268 -9.41167 -9.11125 -8.97302 -8.80105 -8.05270 -6.94156 -6.68379 -4.43478 1.00137 1.25650 2.13408 2.39364 2.71510 3.10040 3.12025 3.16492 3.19650 3.22863 3.82834 4.46112 4.65884 4.74854 4.79298 5.00316 5.06073 5.15057 5.24621 5.29263 5.49568 5.58509 5.76603 5.79859 5.89973 5.98851 6.27498 6.45229 6.48190 6.70323 6.73009 6.75841 6.82556 7.08067 7.22301 7.40167 8.15074 8.26037 8.56519 8.85242 10.38711 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.013710 B = 0.006923 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.743142 B = 4043.744250 C = 5923.280114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.168 4.168 3 C 0.120 3.880 4 N -0.531 5.531 5 C 0.329 3.671 6 S 0.177 5.823 7 C -0.540 4.540 8 H 0.118 0.882 9 C 0.078 3.922 10 N -0.870 5.870 11 Si 0.935 3.065 12 H -0.268 1.268 13 H -0.282 1.282 14 H -0.268 1.268 15 N -0.542 5.542 16 C 0.202 3.798 17 C -0.135 4.135 18 C -0.069 4.069 19 C -0.179 4.179 20 C -0.030 4.030 21 C -0.236 4.236 22 C 0.557 3.443 23 O -0.533 6.533 24 H 0.100 0.900 25 H 0.098 0.902 26 H 0.119 0.881 27 H 0.099 0.901 28 H 0.107 0.893 29 H 0.278 0.722 30 H 0.132 0.868 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.020 2.889 6.577 8.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.187 4.187 3 C -0.002 4.002 4 N -0.255 5.255 5 C -0.036 4.036 6 S 0.421 5.579 7 C -0.688 4.688 8 H 0.136 0.864 9 C -0.133 4.133 10 N -0.504 5.504 11 Si 0.760 3.240 12 H -0.193 1.193 13 H -0.207 1.207 14 H -0.192 1.192 15 N -0.270 5.270 16 C 0.082 3.918 17 C -0.157 4.157 18 C -0.089 4.089 19 C -0.199 4.199 20 C -0.049 4.049 21 C -0.245 4.245 22 C 0.350 3.650 23 O -0.411 6.411 24 H 0.119 0.881 25 H 0.116 0.884 26 H 0.137 0.863 27 H 0.117 0.883 28 H 0.125 0.875 29 H 0.088 0.912 30 H 0.150 0.850 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.471 2.643 5.185 7.987 hybrid contribution 0.975 0.051 1.432 1.733 sum -4.495 2.694 6.617 8.441 Atomic orbital electron populations 1.23833 0.95574 1.01966 0.99387 1.23155 0.96258 0.98504 1.00766 1.20990 0.92673 0.97535 0.88984 1.46443 1.11866 1.54739 1.12440 1.26304 0.81367 0.92304 1.03619 1.83604 1.15389 1.63017 0.95908 1.23612 0.95535 1.46841 1.02837 0.86431 1.25198 1.00406 0.93720 0.93980 1.69887 1.37998 1.40100 1.02370 0.85929 0.80625 0.79366 0.78090 1.19266 1.20693 1.19249 1.69089 1.29491 1.29067 0.99358 1.18922 0.90663 0.90448 0.91783 1.20535 0.99551 1.03813 0.91758 1.20862 0.96189 0.95454 0.96346 1.20884 0.94039 1.05840 0.99178 1.20858 0.99009 0.94225 0.90846 1.20475 0.95415 1.12776 0.95823 1.18388 0.87514 0.77061 0.82052 1.90761 1.20094 1.47864 1.82341 0.88134 0.88356 0.86297 0.88310 0.87502 0.91171 0.85042 0.85965 0.86119 0.85573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 14.32 29.02 0.42 -1.79 16 2 C -0.17 -2.56 9.85 -36.02 -0.35 -2.91 16 3 C 0.12 1.97 5.32 -5.20 -0.03 1.94 16 4 N -0.53 -10.38 2.61 -118.67 -0.31 -10.69 16 5 C 0.33 7.09 7.77 -88.49 -0.69 6.40 16 6 S 0.18 3.97 19.48 -107.50 -2.09 1.88 16 7 C -0.54 -13.75 9.23 30.94 0.29 -13.46 16 8 H 0.12 3.05 6.48 -52.48 -0.34 2.71 16 9 C 0.08 1.94 5.49 -17.47 -0.10 1.85 16 10 N -0.87 -22.46 13.22 55.49 0.73 -21.72 16 11 Si 0.94 19.71 29.55 -169.99 -5.02 14.68 16 12 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 13 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 14 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 15 N -0.54 -12.12 8.28 -10.89 -0.09 -12.21 16 16 C 0.20 4.09 6.61 -84.78 -0.56 3.53 16 17 C -0.14 -2.31 9.98 -39.57 -0.40 -2.70 16 18 C -0.07 -0.96 9.95 -39.92 -0.40 -1.36 16 19 C -0.18 -2.49 10.02 -39.49 -0.40 -2.89 16 20 C -0.03 -0.49 9.68 -39.32 -0.38 -0.87 16 21 C -0.24 -4.59 5.90 -104.74 -0.62 -5.21 16 22 C 0.56 11.30 7.66 -12.47 -0.10 11.20 16 23 O -0.53 -11.17 16.32 5.17 0.08 -11.08 16 24 H 0.10 1.13 8.06 -52.49 -0.42 0.71 16 25 H 0.10 1.20 7.84 -52.49 -0.41 0.79 16 26 H 0.12 1.89 8.06 -52.49 -0.42 1.47 16 27 H 0.10 1.52 7.12 -51.93 -0.37 1.15 16 28 H 0.11 1.68 6.48 -51.93 -0.34 1.34 16 29 H 0.28 6.73 8.31 -40.82 -0.34 6.39 16 30 H 0.13 2.13 8.06 -52.49 -0.42 1.71 16 31 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.13 1.93 7.83 -52.49 -0.41 1.52 16 LS Contribution 306.89 15.07 4.62 4.62 Total: -1.00 -28.55 306.89 -8.50 -37.05 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -3.12 Total: 3.76 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -3.31 Total: -6.28 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: 0.33 Total: -44.63 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.08 Total: -11.08 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.68 kcal Atomic # 16 Polarization: 3.97 SS G_CDS: -2.09 Total: 1.88 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.55 -8.50 -37.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001749539.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.931 kcal (2) G-P(sol) polarization free energy of solvation -28.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds