Wall clock time and date at job start Tue Mar 31 2020 03:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50704 * 120.00164 * 2 1 4 4 N 1.46491 * 109.47365 * 124.99990 * 3 2 1 5 5 C 1.36669 * 119.78486 * 90.00139 * 4 3 2 6 6 S 1.76196 * 118.45981 * 359.97438 * 5 4 3 7 7 C 1.76204 * 99.99862 * 180.02562 * 6 5 4 8 8 H 1.08004 * 119.99826 * 0.02562 * 7 6 5 9 9 C 1.38804 * 120.00184 * 180.02562 * 7 6 5 10 10 N 1.31522 * 119.99672 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 119.99907 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47208 * 60.00182 * 11 9 7 13 13 H 1.48503 * 109.46991 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47489 * 299.99548 * 11 9 7 15 15 N 1.30957 * 123.07412 * 180.02562 * 5 4 3 16 16 C 1.34764 * 121.65303 * 359.97053 * 15 5 4 17 17 C 1.39838 * 121.54360 * 180.02562 * 16 15 5 18 18 C 1.36608 * 119.80489 * 179.97438 * 17 16 15 19 19 C 1.38925 * 120.97034 * 359.97438 * 18 17 16 20 20 C 1.37783 * 120.59500 * 0.02562 * 19 18 17 21 21 C 1.39386 * 119.40704 * 359.97438 * 20 19 18 22 22 C 1.35343 * 119.79024 * 269.98222 * 4 3 2 23 23 O 1.21724 * 121.25832 * 0.02562 * 22 4 3 24 24 H 1.07997 * 120.00047 * 179.97438 * 1 2 3 25 25 H 1.07998 * 120.00241 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.00241 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.46935 * 4.99905 * 3 2 1 28 28 H 1.09000 * 109.47260 * 245.00295 * 3 2 1 29 29 H 0.97002 * 120.00285 * 180.02562 * 10 9 7 30 30 H 1.07997 * 120.10062 * 359.97438 * 17 16 15 31 31 H 1.08001 * 119.51421 * 180.28620 * 18 17 16 32 32 H 1.07997 * 119.69806 * 180.02562 * 19 18 17 33 33 H 1.07995 * 120.29822 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1313 5 6 4.2663 0.8586 0.9753 6 16 4.7401 0.2273 -0.6000 7 6 6.4070 -0.2297 -0.2577 8 1 6.8184 -0.0726 0.7285 9 6 7.1915 -0.7915 -1.2555 10 7 6.6904 -0.9832 -2.4563 11 14 8.9584 -1.2766 -0.8924 12 1 8.9806 -2.2888 0.1941 13 1 9.5755 -1.8502 -2.1153 14 1 9.7237 -0.0772 -0.4672 15 7 5.1496 0.8513 1.9420 16 6 4.8561 1.3179 3.1718 17 6 5.8013 1.3095 4.2023 18 6 5.4657 1.7919 5.4355 19 6 4.1946 2.2940 5.6850 20 6 3.2414 2.3158 4.6903 21 6 3.5621 1.8286 3.4244 22 6 2.5876 1.8257 2.3243 23 8 1.4578 2.2510 2.4802 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3585 2.1317 0.0896 28 1 2.6213 1.4026 -0.9314 29 1 7.2384 -1.3762 -3.1536 30 1 6.7938 0.9228 4.0238 31 1 6.2008 1.7875 6.2267 32 1 3.9515 2.6706 6.6676 33 1 2.2547 2.7068 4.8897 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001749539.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:00 Heat of formation + Delta-G solvation = 15.127136 kcal Electronic energy + Delta-G solvation = -19809.862154 eV Core-core repulsion = 16733.478978 eV Total energy + Delta-G solvation = -3076.383176 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.44131 -39.56284 -38.40870 -36.28889 -34.77243 -33.86836 -32.21515 -30.88969 -28.03595 -27.72718 -25.89673 -24.59531 -22.87685 -21.16122 -20.65884 -19.71972 -19.19802 -18.37300 -17.19031 -16.97641 -16.70987 -16.49173 -15.98078 -15.65991 -15.29318 -14.84695 -14.83641 -14.60982 -14.43141 -13.57881 -13.41868 -13.17248 -13.01862 -12.93385 -12.85986 -12.52410 -12.32954 -12.09114 -11.34505 -11.29236 -11.05322 -10.92064 -10.66856 -10.42611 -10.12895 -9.64897 -8.56918 -8.53867 -6.34127 -0.44714 -0.12100 0.59473 1.06849 1.19976 1.39639 1.44410 1.52175 1.79962 1.82065 2.11855 2.88973 2.95922 3.05974 3.24228 3.59778 3.80273 3.84714 3.94655 4.13995 4.25872 4.37202 4.47087 4.55643 4.58115 4.89477 4.98278 5.11563 5.21430 5.32244 5.49696 5.51580 5.57779 5.58820 5.71471 5.94494 6.30566 6.60262 6.94302 6.99712 8.54205 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.013710 B = 0.006923 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.743142 B = 4043.744250 C = 5923.280114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.197 4.197 3 C 0.118 3.882 4 N -0.529 5.529 5 C 0.330 3.670 6 S 0.155 5.845 7 C -0.564 4.564 8 H 0.104 0.896 9 C 0.035 3.965 10 N -0.900 5.900 11 Si 0.993 3.007 12 H -0.266 1.266 13 H -0.271 1.271 14 H -0.266 1.266 15 N -0.561 5.561 16 C 0.160 3.840 17 C -0.144 4.144 18 C -0.053 4.053 19 C -0.150 4.150 20 C -0.044 4.044 21 C -0.251 4.251 22 C 0.546 3.454 23 O -0.547 6.547 24 H 0.123 0.877 25 H 0.110 0.890 26 H 0.106 0.894 27 H 0.108 0.892 28 H 0.106 0.894 29 H 0.281 0.719 30 H 0.134 0.866 31 H 0.169 0.831 32 H 0.167 0.833 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.124 3.502 9.416 11.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.216 4.216 3 C -0.003 4.003 4 N -0.252 5.252 5 C -0.038 4.038 6 S 0.397 5.603 7 C -0.712 4.712 8 H 0.122 0.878 9 C -0.172 4.172 10 N -0.535 5.535 11 Si 0.815 3.185 12 H -0.191 1.191 13 H -0.196 1.196 14 H -0.190 1.190 15 N -0.290 5.290 16 C 0.042 3.958 17 C -0.166 4.166 18 C -0.072 4.072 19 C -0.170 4.170 20 C -0.063 4.063 21 C -0.260 4.260 22 C 0.341 3.659 23 O -0.426 6.426 24 H 0.141 0.859 25 H 0.128 0.872 26 H 0.124 0.876 27 H 0.126 0.874 28 H 0.124 0.876 29 H 0.091 0.909 30 H 0.152 0.848 31 H 0.187 0.813 32 H 0.185 0.815 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.587 3.278 8.087 10.361 hybrid contribution 0.869 -0.011 0.874 1.233 sum -4.718 3.267 8.961 10.641 Atomic orbital electron populations 1.24107 0.94679 1.03569 0.95664 1.23018 0.97064 0.97324 1.04188 1.21170 0.92451 0.98712 0.88012 1.46538 1.11551 1.53943 1.13193 1.26065 0.82130 0.92559 1.03060 1.83401 1.14382 1.65378 0.97179 1.23727 0.97146 1.47784 1.02561 0.87762 1.25977 1.03912 0.93554 0.93739 1.69955 1.39297 1.41178 1.03059 0.85062 0.76282 0.78972 0.78177 1.19101 1.19572 1.19043 1.69004 1.30487 1.28931 1.00549 1.19291 0.92132 0.92533 0.91801 1.20814 0.99219 1.04121 0.92402 1.21384 0.97187 0.92710 0.95897 1.21467 0.92859 1.02464 1.00169 1.21156 1.00445 0.94469 0.90227 1.20710 0.95023 1.13298 0.96928 1.18679 0.87723 0.77026 0.82499 1.90730 1.20454 1.48769 1.82625 0.85930 0.87178 0.87594 0.87355 0.87569 0.90901 0.84792 0.81326 0.81505 0.84465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 14.32 67.79 0.97 -2.57 16 2 C -0.20 -6.09 9.85 25.65 0.25 -5.84 16 3 C 0.12 3.98 5.32 85.64 0.46 4.43 16 4 N -0.53 -21.33 2.61 -647.25 -1.69 -23.02 16 5 C 0.33 14.83 7.77 179.60 1.40 16.22 16 6 S 0.15 7.34 19.48 -56.49 -1.10 6.24 16 7 C -0.56 -29.94 9.23 67.96 0.63 -29.31 16 8 H 0.10 5.66 6.48 -2.91 -0.02 5.64 16 9 C 0.04 1.82 5.49 84.87 0.47 2.28 16 10 N -0.90 -47.85 13.22 21.64 0.29 -47.56 16 11 Si 0.99 41.01 29.55 68.60 2.03 43.04 16 12 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 13 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 14 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 15 N -0.56 -25.96 8.28 -188.38 -1.56 -27.52 16 16 C 0.16 6.47 6.61 39.86 0.26 6.73 16 17 C -0.14 -4.68 9.98 22.28 0.22 -4.46 16 18 C -0.05 -1.23 9.95 22.05 0.22 -1.02 16 19 C -0.15 -3.43 10.02 22.33 0.22 -3.20 16 20 C -0.04 -1.31 9.68 22.44 0.22 -1.10 16 21 C -0.25 -9.64 5.90 -19.94 -0.12 -9.76 16 22 C 0.55 22.38 7.66 86.44 0.66 23.04 16 23 O -0.55 -22.76 16.32 -4.43 -0.07 -22.83 16 24 H 0.12 2.49 8.06 -2.91 -0.02 2.47 16 25 H 0.11 2.48 7.84 -2.91 -0.02 2.46 16 26 H 0.11 3.54 8.06 -2.91 -0.02 3.51 16 27 H 0.11 3.37 7.12 -2.39 -0.02 3.35 16 28 H 0.11 3.53 6.48 -2.39 -0.02 3.52 16 29 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 30 H 0.13 4.20 8.06 -2.91 -0.02 4.17 16 31 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 32 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 33 H 0.14 3.82 7.83 -2.91 -0.02 3.80 16 Total: -1.00 -64.23 306.89 4.89 -59.34 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 1.14 Total: 16.87 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: 5.86 Total: -4.54 kcal Atomic # 7 Polarization: -95.14 SS G_CDS: -2.96 Total: -98.11 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.07 Total: -22.83 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Atomic # 16 Polarization: 7.34 SS G_CDS: -1.10 Total: 6.24 kcal Total: -64.23 4.89 -59.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001749539.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.466 kcal (2) G-P(sol) polarization free energy of solvation -64.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds