Wall clock time and date at job start Tue Mar 31 2020 03:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.40264 * 120.48342 * 28.61088 * 3 2 1 5 5 C 1.36879 * 118.60356 * 180.24638 * 4 3 2 6 6 C 1.39936 * 119.55033 * 359.74914 * 5 4 3 7 7 C 1.47433 * 119.51770 * 179.97438 * 6 5 4 8 8 C 1.35047 * 125.27214 * 179.73867 * 7 6 5 9 9 C 1.37725 * 114.70416 * 179.79575 * 8 7 6 10 10 C 1.33807 * 115.08375 * 0.49947 * 9 8 7 11 11 S 1.75863 * 109.75718 * 359.73558 * 10 9 8 12 12 N 1.32907 * 120.95692 * 0.02562 * 6 5 4 13 13 C 1.32346 * 121.50067 * 359.97438 * 12 6 5 14 14 S 1.76201 * 119.82141 * 179.97438 * 13 12 6 15 15 C 1.76199 * 99.99986 * 359.97438 * 14 13 12 16 16 H 1.08002 * 120.00405 * 0.02562 * 15 14 13 17 17 C 1.38803 * 119.99855 * 179.72358 * 15 14 13 18 18 N 1.31554 * 119.99709 * 0.27749 * 17 15 14 19 19 Si 1.86803 * 120.00005 * 180.27923 * 17 15 14 20 20 H 1.48498 * 109.47174 * 90.00123 * 19 17 15 21 21 H 1.48494 * 109.46800 * 210.00171 * 19 17 15 22 22 H 1.48504 * 109.46913 * 329.99873 * 19 17 15 23 23 H 1.07994 * 120.69937 * 359.97438 * 4 3 2 24 24 H 1.08008 * 120.22300 * 179.72905 * 5 4 3 25 25 H 1.07998 * 122.64954 * 359.97438 * 8 7 6 26 26 H 1.07995 * 122.45698 * 180.21462 * 9 8 7 27 27 H 1.07991 * 125.11738 * 179.75096 * 10 9 8 28 28 H 0.97000 * 119.99172 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2801 -1.0602 -0.5788 5 6 4.6481 -1.0226 -0.5528 6 6 5.2975 0.0657 0.0405 7 6 6.7710 0.1052 0.0686 8 6 7.5145 1.0971 0.6043 9 6 8.8759 0.9088 0.5148 10 6 9.2533 -0.2199 -0.0968 11 16 7.8332 -1.1286 -0.5971 12 7 4.6051 1.0638 0.5798 13 6 3.2817 1.0683 0.5767 14 16 2.4083 2.4142 1.3050 15 6 3.7636 3.4006 1.8478 16 1 4.7767 3.0700 1.6721 17 6 3.5294 4.6055 2.4958 18 7 2.2954 5.0085 2.7094 19 14 4.9663 5.6551 3.0643 20 1 5.3503 6.5967 1.9822 21 1 4.5707 6.4234 4.2719 22 1 6.1203 4.7792 3.3910 23 1 2.7599 -1.8913 -1.0316 24 1 5.2225 -1.8278 -0.9869 25 1 7.0762 1.9680 1.0689 26 1 9.5866 1.6220 0.9053 27 1 10.2761 -0.5267 -0.2585 28 1 2.1318 5.8504 3.1625 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002262075.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:25 Heat of formation + Delta-G solvation = 89.722770 kcal Electronic energy + Delta-G solvation = -16552.486752 eV Core-core repulsion = 13786.258061 eV Total energy + Delta-G solvation = -2766.228690 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 288.009 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -39.63582 -37.49604 -35.99237 -32.87467 -32.34945 -31.85832 -28.58867 -25.94997 -24.86706 -23.58126 -22.61594 -19.12210 -18.77251 -18.33844 -17.40895 -16.18062 -15.71312 -15.10004 -15.03687 -14.22093 -14.03500 -13.55968 -13.15865 -12.94884 -12.89992 -12.37854 -12.35812 -12.34523 -12.10496 -11.83448 -11.34437 -11.26475 -11.11249 -10.79949 -10.27749 -10.00631 -9.62892 -9.23016 -9.02931 -8.94238 -8.44102 -8.11058 -6.99567 -6.62781 -4.33920 0.38843 1.49765 1.57672 1.66464 1.98535 2.79147 2.83347 3.09116 3.11965 3.16384 3.21615 3.56950 3.86418 4.33945 4.35734 4.58574 4.81784 4.84266 5.06072 5.24110 5.39378 5.46664 5.60325 5.69425 5.81116 6.13501 6.32915 6.36657 6.43370 6.58390 6.86557 7.42234 7.99156 8.23956 8.32632 8.88555 10.44295 Molecular weight = 288.01amu Principal moments of inertia in cm(-1) A = 0.011890 B = 0.007105 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.262639 B = 3940.189316 C = 6284.601543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C 0.273 3.727 3 C -0.125 4.125 4 C 0.006 3.994 5 C -0.226 4.226 6 C 0.244 3.756 7 C -0.143 4.143 8 C -0.092 4.092 9 C -0.135 4.135 10 C -0.216 4.216 11 S 0.121 5.879 12 N -0.464 5.464 13 C 0.144 3.856 14 S 0.149 5.851 15 C -0.540 4.540 16 H 0.113 0.887 17 C 0.075 3.925 18 N -0.866 5.866 19 Si 0.931 3.069 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.264 1.264 23 H 0.136 0.864 24 H 0.129 0.871 25 H 0.155 0.845 26 H 0.141 0.859 27 H 0.164 0.836 28 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.095 -10.173 -5.501 16.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.111 5.111 2 C -0.041 4.041 3 C -0.144 4.144 4 C -0.022 4.022 5 C -0.254 4.254 6 C 0.095 3.905 7 C -0.261 4.261 8 C -0.124 4.124 9 C -0.166 4.166 10 C -0.352 4.352 11 S 0.385 5.615 12 N -0.178 5.178 13 C -0.107 4.107 14 S 0.408 5.592 15 C -0.688 4.688 16 H 0.131 0.869 17 C -0.136 4.136 18 N -0.499 5.499 19 Si 0.756 3.244 20 H -0.198 1.198 21 H -0.206 1.206 22 H -0.188 1.188 23 H 0.154 0.846 24 H 0.147 0.853 25 H 0.172 0.828 26 H 0.159 0.841 27 H 0.182 0.818 28 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.053 -10.131 -5.480 14.650 hybrid contribution 2.416 1.110 0.594 2.724 sum 11.469 -9.021 -4.886 15.388 Atomic orbital electron populations 1.81137 1.11836 1.08237 1.09897 1.25268 0.92210 0.93397 0.93252 1.16398 0.85187 0.99813 1.12963 1.20868 0.93504 0.95238 0.92620 1.21186 0.94643 1.00823 1.08788 1.19050 0.90045 0.90045 0.91380 1.22647 0.94820 0.99856 1.08732 1.20630 0.92521 0.99939 0.99337 1.20169 0.96026 0.98289 1.02087 1.25820 1.02025 1.00004 1.07373 1.83928 0.96019 1.23506 1.58084 1.68366 1.06155 1.24762 1.18518 1.24336 0.92254 0.98454 0.95663 1.83873 1.09918 1.08884 1.56556 1.23538 0.95604 1.06780 1.42843 0.86910 1.25229 0.97342 0.96806 0.94191 1.69944 1.19524 1.22148 1.38303 0.85938 0.80784 0.79372 0.78298 1.19773 1.20574 1.18828 0.84616 0.85329 0.82776 0.84083 0.81834 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -8.78 18.54 41.84 0.78 -8.01 15 2 C 0.27 5.23 14.30 -22.47 -0.32 4.90 15 3 C -0.12 -2.29 5.79 -106.25 -0.61 -2.90 15 4 C 0.01 0.09 9.83 -39.31 -0.39 -0.30 15 5 C -0.23 -3.26 9.56 -39.44 -0.38 -3.64 15 6 C 0.24 4.21 6.74 -83.02 -0.56 3.65 15 7 C -0.14 -2.17 6.37 -36.97 -0.24 -2.40 15 8 C -0.09 -1.38 9.83 -40.90 -0.40 -1.79 15 9 C -0.14 -1.61 10.16 -41.32 -0.42 -2.03 15 10 C -0.22 -2.24 11.23 29.18 0.33 -1.91 15 11 S 0.12 1.36 22.19 -107.50 -2.38 -1.02 15 12 N -0.46 -9.62 8.01 -8.31 -0.07 -9.69 15 13 C 0.14 3.07 7.00 -16.37 -0.11 2.95 15 14 S 0.15 3.67 20.63 -107.50 -2.22 1.45 15 15 C -0.54 -14.17 9.26 30.94 0.29 -13.89 15 16 H 0.11 2.91 6.54 -52.49 -0.34 2.56 15 17 C 0.07 1.95 5.49 -17.46 -0.10 1.85 15 18 N -0.87 -23.71 13.22 55.49 0.73 -22.97 15 19 Si 0.93 20.01 29.55 -169.99 -5.02 14.99 15 20 H -0.27 -5.76 7.11 56.52 0.40 -5.36 15 21 H -0.28 -5.93 7.11 56.52 0.40 -5.53 15 22 H -0.26 -5.53 7.11 56.52 0.40 -5.12 15 23 H 0.14 1.49 8.06 -52.49 -0.42 1.06 15 24 H 0.13 1.47 7.23 -52.48 -0.38 1.09 15 25 H 0.15 2.57 7.96 -52.49 -0.42 2.16 15 26 H 0.14 1.38 8.06 -52.49 -0.42 0.96 15 27 H 0.16 1.20 8.06 -52.49 -0.42 0.78 15 28 H 0.28 7.06 8.31 -40.82 -0.34 6.72 15 LS Contribution 293.24 15.07 4.42 4.42 Total: -1.00 -28.79 293.24 -8.22 -37.01 By element: Atomic # 1 Polarization: 0.86 SS G_CDS: -1.54 Total: -0.69 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -2.91 Total: -15.50 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: 1.44 Total: -40.67 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Atomic # 16 Polarization: 5.03 SS G_CDS: -4.60 Total: 0.43 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.79 -8.22 -37.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002262075.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.734 kcal (2) G-P(sol) polarization free energy of solvation -28.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds