Wall clock time and date at job start Tue Mar 31 2020 03:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.40264 * 120.48342 * 28.61088 * 3 2 1 5 5 C 1.36879 * 118.60356 * 180.24638 * 4 3 2 6 6 C 1.39936 * 119.55033 * 359.74914 * 5 4 3 7 7 C 1.47433 * 119.51770 * 179.97438 * 6 5 4 8 8 C 1.35047 * 125.27214 * 179.73867 * 7 6 5 9 9 C 1.37725 * 114.70416 * 179.79575 * 8 7 6 10 10 C 1.33807 * 115.08375 * 0.49947 * 9 8 7 11 11 S 1.75863 * 109.75718 * 359.73558 * 10 9 8 12 12 N 1.32907 * 120.95692 * 0.02562 * 6 5 4 13 13 C 1.32346 * 121.50067 * 359.97438 * 12 6 5 14 14 S 1.76201 * 119.82141 * 179.97438 * 13 12 6 15 15 C 1.76199 * 99.99986 * 359.97438 * 14 13 12 16 16 H 1.08002 * 120.00405 * 0.02562 * 15 14 13 17 17 C 1.38803 * 119.99855 * 179.72358 * 15 14 13 18 18 N 1.31554 * 119.99709 * 0.27749 * 17 15 14 19 19 Si 1.86803 * 120.00005 * 180.27923 * 17 15 14 20 20 H 1.48498 * 109.47174 * 90.00123 * 19 17 15 21 21 H 1.48494 * 109.46800 * 210.00171 * 19 17 15 22 22 H 1.48504 * 109.46913 * 329.99873 * 19 17 15 23 23 H 1.07994 * 120.69937 * 359.97438 * 4 3 2 24 24 H 1.08008 * 120.22300 * 179.72905 * 5 4 3 25 25 H 1.07998 * 122.64954 * 359.97438 * 8 7 6 26 26 H 1.07995 * 122.45698 * 180.21462 * 9 8 7 27 27 H 1.07991 * 125.11738 * 179.75096 * 10 9 8 28 28 H 0.97000 * 119.99172 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2801 -1.0602 -0.5788 5 6 4.6481 -1.0226 -0.5528 6 6 5.2975 0.0657 0.0405 7 6 6.7710 0.1052 0.0686 8 6 7.5145 1.0971 0.6043 9 6 8.8759 0.9088 0.5148 10 6 9.2533 -0.2199 -0.0968 11 16 7.8332 -1.1286 -0.5971 12 7 4.6051 1.0638 0.5798 13 6 3.2817 1.0683 0.5767 14 16 2.4083 2.4142 1.3050 15 6 3.7636 3.4006 1.8478 16 1 4.7767 3.0700 1.6721 17 6 3.5294 4.6055 2.4958 18 7 2.2954 5.0085 2.7094 19 14 4.9663 5.6551 3.0643 20 1 5.3503 6.5967 1.9822 21 1 4.5707 6.4234 4.2719 22 1 6.1203 4.7792 3.3910 23 1 2.7599 -1.8913 -1.0316 24 1 5.2225 -1.8278 -0.9869 25 1 7.0762 1.9680 1.0689 26 1 9.5866 1.6220 0.9053 27 1 10.2761 -0.5267 -0.2585 28 1 2.1318 5.8504 3.1625 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002262075.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:25 Heat of formation + Delta-G solvation = 73.514620 kcal Electronic energy + Delta-G solvation = -16553.189590 eV Core-core repulsion = 13786.258061 eV Total energy + Delta-G solvation = -2766.931528 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 288.009 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.07482 -38.56133 -37.53446 -34.78294 -33.75221 -33.22704 -29.75598 -27.86970 -26.07278 -25.05674 -23.75024 -20.57420 -20.03664 -19.74366 -18.87120 -17.56989 -16.99798 -16.93018 -16.29508 -15.69112 -15.26122 -15.10128 -14.50615 -14.48524 -14.07056 -13.93177 -13.66435 -13.49670 -13.40718 -13.16756 -13.00525 -12.99412 -12.80932 -11.99466 -11.75839 -11.56816 -10.98175 -10.90645 -10.87022 -10.40060 -9.37271 -9.33604 -8.75001 -8.53462 -6.32605 -0.85115 0.21326 0.39712 0.58663 1.02149 1.12151 1.36733 1.38530 1.50991 1.61217 1.72580 2.10840 2.13768 2.83377 2.87933 2.96940 2.98061 3.43126 3.85933 4.04604 4.24579 4.25572 4.42890 4.54939 4.74648 4.96363 5.02657 5.21862 5.34988 5.45123 5.53261 5.62287 6.26560 6.44950 6.86151 6.94825 8.55990 Molecular weight = 288.01amu Principal moments of inertia in cm(-1) A = 0.011890 B = 0.007105 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.262639 B = 3940.189316 C = 6284.601543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C 0.285 3.715 3 C -0.123 4.123 4 C 0.021 3.979 5 C -0.196 4.196 6 C 0.231 3.769 7 C -0.190 4.190 8 C -0.103 4.103 9 C -0.155 4.155 10 C -0.191 4.191 11 S 0.184 5.816 12 N -0.499 5.499 13 C 0.146 3.854 14 S 0.050 5.950 15 C -0.548 4.548 16 H 0.105 0.895 17 C 0.023 3.977 18 N -0.909 5.909 19 Si 0.996 3.004 20 H -0.266 1.266 21 H -0.274 1.274 22 H -0.259 1.259 23 H 0.188 0.812 24 H 0.174 0.826 25 H 0.121 0.879 26 H 0.159 0.841 27 H 0.204 0.796 28 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.448 -13.460 -7.274 21.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.132 5.132 2 C -0.030 4.030 3 C -0.141 4.141 4 C -0.007 4.007 5 C -0.222 4.222 6 C 0.084 3.916 7 C -0.307 4.307 8 C -0.136 4.136 9 C -0.185 4.185 10 C -0.328 4.328 11 S 0.449 5.551 12 N -0.213 5.213 13 C -0.105 4.105 14 S 0.304 5.696 15 C -0.695 4.695 16 H 0.123 0.877 17 C -0.182 4.182 18 N -0.544 5.544 19 Si 0.817 3.183 20 H -0.191 1.191 21 H -0.199 1.199 22 H -0.182 1.182 23 H 0.205 0.795 24 H 0.191 0.809 25 H 0.139 0.861 26 H 0.177 0.823 27 H 0.221 0.779 28 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.463 -13.514 -7.306 19.782 hybrid contribution 1.616 1.740 0.932 2.551 sum 14.079 -11.774 -6.374 19.428 Atomic orbital electron populations 1.81138 1.12515 1.08970 1.10535 1.25380 0.92328 0.92696 0.92588 1.16625 0.84837 1.00007 1.12609 1.21432 0.93544 0.94901 0.90833 1.21724 0.94838 1.00142 1.05483 1.19625 0.91432 0.89863 0.90640 1.22805 0.94300 1.02387 1.11207 1.20655 0.94346 0.99194 0.99405 1.20254 0.94747 0.99896 1.03585 1.26363 1.03696 0.98451 1.04254 1.83608 0.94454 1.20871 1.56188 1.68257 1.06037 1.26981 1.19996 1.23968 0.92858 0.97736 0.95946 1.83860 1.11815 1.12540 1.61343 1.23566 0.95227 1.07353 1.43402 0.87661 1.26141 0.99854 0.97921 0.94293 1.70064 1.21440 1.22778 1.40129 0.84972 0.77599 0.77671 0.78016 1.19094 1.19860 1.18239 0.79526 0.80897 0.86080 0.82308 0.77920 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -18.48 18.54 19.01 0.35 -18.12 15 2 C 0.28 10.82 14.30 88.33 1.26 12.09 15 3 C -0.12 -4.40 5.79 -20.92 -0.12 -4.53 15 4 C 0.02 0.52 9.83 22.44 0.22 0.74 15 5 C -0.20 -4.82 9.56 22.36 0.21 -4.60 15 6 C 0.23 7.60 6.74 41.82 0.28 7.88 15 7 C -0.19 -5.37 6.37 23.96 0.15 -5.22 15 8 C -0.10 -3.03 9.83 21.41 0.21 -2.82 15 9 C -0.16 -3.31 10.16 21.14 0.21 -3.09 15 10 C -0.19 -3.05 11.23 66.81 0.75 -2.30 15 11 S 0.18 3.27 22.19 -56.49 -1.25 2.02 15 12 N -0.50 -21.15 8.01 -180.20 -1.44 -22.59 15 13 C 0.15 6.44 7.00 85.24 0.60 7.04 15 14 S 0.05 2.67 20.63 -56.49 -1.17 1.50 15 15 C -0.55 -30.72 9.26 67.96 0.63 -30.10 15 16 H 0.11 5.83 6.54 -2.91 -0.02 5.81 15 17 C 0.02 1.28 5.49 84.87 0.47 1.75 15 18 N -0.91 -52.87 13.22 21.65 0.29 -52.58 15 19 Si 1.00 42.92 29.55 68.60 2.03 44.95 15 20 H -0.27 -11.03 7.11 99.48 0.71 -10.32 15 21 H -0.27 -11.34 7.11 99.48 0.71 -10.63 15 22 H -0.26 -10.69 7.11 99.48 0.71 -9.98 15 23 H 0.19 2.89 8.06 -2.91 -0.02 2.87 15 24 H 0.17 2.80 7.23 -2.91 -0.02 2.77 15 25 H 0.12 4.31 7.96 -2.91 -0.02 4.29 15 26 H 0.16 2.72 8.06 -2.91 -0.02 2.70 15 27 H 0.20 1.66 8.06 -2.92 -0.02 1.63 15 28 H 0.28 14.99 8.31 -92.71 -0.77 14.22 15 Total: -1.00 -69.53 293.24 4.90 -64.63 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: 1.22 Total: 3.36 kcal Atomic # 6 Polarization: -28.04 SS G_CDS: 4.88 Total: -23.17 kcal Atomic # 7 Polarization: -92.49 SS G_CDS: -0.81 Total: -93.30 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: 5.94 SS G_CDS: -2.42 Total: 3.53 kcal Total: -69.53 4.90 -64.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002262075.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.147 kcal (2) G-P(sol) polarization free energy of solvation -69.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds