Wall clock time and date at job start Tue Mar 31 2020 03:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86803 * 120.00467 * 2 1 4 4 H 1.48499 * 109.47018 * 270.00443 * 3 2 1 5 5 H 1.48501 * 109.46795 * 29.99764 * 3 2 1 6 6 H 1.48495 * 109.47582 * 149.99796 * 3 2 1 7 7 C 1.38804 * 120.00142 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99852 * 359.97438 * 7 2 1 9 9 S 1.76196 * 120.00508 * 180.02562 * 7 2 1 10 10 C 1.76197 * 100.00442 * 179.97438 * 9 7 2 11 11 N 1.30960 * 118.45574 * 0.29774 * 10 9 7 12 12 C 1.34771 * 121.64797 * 180.28653 * 11 10 9 13 13 C 1.39835 * 121.55413 * 179.68968 * 12 11 10 14 14 C 1.36609 * 119.80404 * 180.02562 * 13 12 11 15 15 C 1.38918 * 120.97714 * 0.03721 * 14 13 12 16 16 C 1.37780 * 120.58857 * 359.96408 * 15 14 13 17 17 C 1.39385 * 119.41057 * 0.02562 * 16 15 14 18 18 C 1.46968 * 121.86010 * 179.97438 * 17 16 15 19 19 O 1.21722 * 121.26360 * 0.02562 * 18 17 16 20 20 N 1.35348 * 117.47564 * 180.02562 * 18 17 16 21 21 C 1.46506 * 119.78366 * 179.97438 * 20 18 17 22 22 C 1.52995 * 117.50008 * 313.15661 * 21 20 18 23 23 C 1.52999 * 117.49996 * 244.49775 * 21 20 18 24 24 H 0.96998 * 119.99917 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.09390 * 359.97438 * 13 12 11 26 26 H 1.07992 * 119.51036 * 180.02562 * 14 13 12 27 27 H 1.07996 * 119.70187 * 179.97438 * 15 14 13 28 28 H 1.08003 * 120.29531 * 180.02562 * 16 15 14 29 29 H 1.09002 * 115.54535 * 98.82854 * 21 20 18 30 30 H 1.09002 * 117.50083 * 0.02562 * 22 21 20 31 31 H 1.08999 * 117.49445 * 145.02001 * 22 21 20 32 32 H 1.08998 * 117.49850 * 214.98866 * 23 21 20 33 33 H 1.09004 * 117.49590 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2494 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5469 1.4401 0.7000 7 6 2.0093 -1.2021 -0.0005 8 1 1.4693 -2.1374 -0.0005 9 16 3.7713 -1.2022 0.0001 10 6 4.0772 -2.9374 -0.0001 11 7 3.0517 -3.7518 -0.0067 12 6 3.2115 -5.0900 -0.0016 13 6 2.1150 -5.9579 -0.0021 14 6 2.3183 -7.3087 0.0037 15 6 3.6024 -7.8386 0.0110 16 6 4.7029 -7.0095 0.0117 17 6 4.5190 -5.6279 0.0057 18 6 5.6540 -4.6942 0.0067 19 8 6.8029 -5.0964 0.0125 20 7 5.3734 -3.3702 0.0010 21 6 6.4665 -2.3946 0.0023 22 6 7.6074 -2.6133 0.9979 23 6 6.5993 -1.4841 1.2247 24 1 -0.4850 0.8400 0.0004 25 1 1.1105 -5.5613 -0.0063 26 1 1.4681 -7.9746 0.0028 27 1 3.7393 -8.9098 0.0159 28 1 5.6992 -7.4265 0.0170 29 1 6.7208 -1.9723 -0.9699 30 1 7.5451 -3.4833 1.6517 31 1 8.6123 -2.3346 0.6808 32 1 6.9412 -0.4629 1.0568 33 1 5.8731 -1.6106 2.0277 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002800233.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:38 Heat of formation + Delta-G solvation = 27.248533 kcal Electronic energy + Delta-G solvation = -20016.846677 eV Core-core repulsion = 16940.989124 eV Total energy + Delta-G solvation = -3075.857553 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.53514 -39.78919 -38.54664 -37.32902 -34.77872 -33.98925 -32.18527 -30.93370 -27.95959 -26.12802 -25.89193 -23.46730 -22.95372 -22.70512 -20.69027 -19.67946 -19.14038 -18.53171 -17.40738 -17.18225 -16.69222 -16.50033 -15.97488 -15.67008 -15.34527 -14.92438 -14.85321 -14.51092 -14.25427 -13.73722 -13.58883 -13.17216 -13.00103 -12.90615 -12.63645 -12.50521 -12.01226 -11.93883 -11.65690 -11.35027 -11.25109 -11.00753 -10.77680 -10.61350 -10.17743 -9.84441 -8.68255 -8.52839 -6.36166 -0.51366 -0.16235 0.38468 1.15539 1.32135 1.34202 1.41157 1.53301 1.76144 2.16295 2.35936 2.55194 2.85065 3.00925 3.28530 3.50448 3.64418 3.77474 3.84383 3.96769 4.10337 4.32078 4.40615 4.48020 4.69224 4.74473 4.95064 4.99658 5.12859 5.16084 5.19025 5.28135 5.45394 5.56979 5.73639 5.89343 6.45879 6.59588 6.82999 6.93995 8.59438 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.016457 B = 0.006904 C = 0.004943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.011970 B = 4054.695003 C = 5663.772855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.050 3.950 3 Si 0.902 3.098 4 H -0.253 1.253 5 H -0.256 1.256 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.086 0.914 9 S 0.130 5.870 10 C 0.347 3.653 11 N -0.560 5.560 12 C 0.156 3.844 13 C -0.145 4.145 14 C -0.053 4.053 15 C -0.146 4.146 16 C -0.043 4.043 17 C -0.248 4.248 18 C 0.548 3.452 19 O -0.536 6.536 20 N -0.510 5.510 21 C 0.005 3.995 22 C -0.135 4.135 23 C -0.155 4.155 24 H 0.281 0.719 25 H 0.126 0.874 26 H 0.168 0.832 27 H 0.171 0.829 28 H 0.142 0.858 29 H 0.148 0.852 30 H 0.081 0.919 31 H 0.139 0.861 32 H 0.145 0.855 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.394 -6.532 1.121 13.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.158 4.158 3 Si 0.721 3.279 4 H -0.177 1.177 5 H -0.180 1.180 6 H -0.133 1.133 7 C -0.708 4.708 8 H 0.104 0.896 9 S 0.371 5.629 10 C -0.022 4.022 11 N -0.288 5.288 12 C 0.039 3.961 13 C -0.166 4.166 14 C -0.072 4.072 15 C -0.165 4.165 16 C -0.062 4.062 17 C -0.256 4.256 18 C 0.342 3.658 19 O -0.414 6.414 20 N -0.234 5.234 21 C -0.098 4.098 22 C -0.172 4.172 23 C -0.193 4.193 24 H 0.091 0.909 25 H 0.144 0.856 26 H 0.186 0.814 27 H 0.188 0.812 28 H 0.160 0.840 29 H 0.165 0.835 30 H 0.099 0.901 31 H 0.157 0.843 32 H 0.163 0.837 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 11.827 -5.415 1.112 13.055 hybrid contribution -0.795 -0.666 -0.144 1.047 sum 11.032 -6.081 0.968 12.634 Atomic orbital electron populations 1.69978 1.07922 1.29509 1.46488 1.25732 0.95452 1.02373 0.92225 0.86122 0.81565 0.79092 0.81098 1.17709 1.18047 1.13307 1.23004 0.90438 0.98544 1.58861 0.89587 1.82419 1.07502 0.89855 1.83082 1.25462 0.81017 1.03032 0.92649 1.69036 1.27694 1.03621 1.28442 1.19253 0.93058 0.89754 0.94033 1.20810 0.97357 0.93734 1.04716 1.21381 0.99040 0.93661 0.93154 1.21500 0.90965 1.01460 1.02585 1.21187 1.00992 0.89980 0.94047 1.20770 0.92148 0.96498 1.16174 1.18606 0.89530 0.81498 0.76182 1.90742 1.21675 1.77571 1.51414 1.45997 1.05922 1.07629 1.63815 1.22423 0.91809 0.96660 0.98922 1.23226 0.95349 0.99584 0.99039 1.23508 1.01347 0.97953 0.96530 0.90925 0.85593 0.81410 0.81197 0.83999 0.83475 0.90052 0.84347 0.83708 0.89242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.19 13.96 21.64 0.30 -51.89 16 2 C 0.05 2.67 5.50 84.87 0.47 3.13 16 3 Si 0.90 37.20 27.74 68.60 1.90 39.10 16 4 H -0.25 -10.07 7.11 99.48 0.71 -9.37 16 5 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 6 H -0.21 -7.65 6.74 99.48 0.67 -6.98 16 7 C -0.56 -30.87 9.77 67.96 0.66 -30.21 16 8 H 0.09 5.42 6.71 -2.91 -0.02 5.40 16 9 S 0.13 5.64 17.11 -56.49 -0.97 4.68 16 10 C 0.35 15.33 7.70 179.61 1.38 16.72 16 11 N -0.56 -26.89 8.28 -188.39 -1.56 -28.45 16 12 C 0.16 6.53 6.62 39.85 0.26 6.80 16 13 C -0.14 -5.09 9.98 22.28 0.22 -4.87 16 14 C -0.05 -1.34 9.95 22.05 0.22 -1.12 16 15 C -0.15 -3.40 10.02 22.32 0.22 -3.18 16 16 C -0.04 -1.28 9.68 22.44 0.22 -1.06 16 17 C -0.25 -9.51 5.90 -19.94 -0.12 -9.62 16 18 C 0.55 21.79 7.46 86.44 0.64 22.44 16 19 O -0.54 -21.33 15.18 -4.42 -0.07 -21.40 16 20 N -0.51 -19.69 2.94 -620.68 -1.83 -21.52 16 21 C 0.00 0.15 5.09 44.99 0.23 0.38 16 22 C -0.13 -3.32 9.25 30.62 0.28 -3.04 16 23 C -0.16 -3.85 8.91 30.62 0.27 -3.58 16 24 H 0.28 14.82 8.31 -92.71 -0.77 14.05 16 25 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 26 H 0.17 2.79 8.06 -2.91 -0.02 2.76 16 27 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 28 H 0.14 3.83 7.83 -2.91 -0.02 3.81 16 29 H 0.15 3.87 8.14 -2.39 -0.02 3.85 16 30 H 0.08 2.36 7.38 -2.39 -0.02 2.35 16 31 H 0.14 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.14 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.09 2.56 8.12 -2.38 -0.02 2.54 16 Total: -1.00 -69.57 298.92 3.86 -65.70 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: 1.11 Total: 20.99 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: 4.97 Total: -7.22 kcal Atomic # 7 Polarization: -98.78 SS G_CDS: -3.08 Total: -101.86 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.07 Total: -21.40 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 1.90 Total: 39.10 kcal Atomic # 16 Polarization: 5.64 SS G_CDS: -0.97 Total: 4.68 kcal Total: -69.57 3.86 -65.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002800233.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.952 kcal (2) G-P(sol) polarization free energy of solvation -69.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds