Wall clock time and date at job start Tue Mar 31 2020 03:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.45549 * 2 1 4 4 C 1.53039 * 109.46051 * 240.02121 * 2 1 3 5 5 C 1.53121 * 109.27436 * 180.80607 * 4 2 1 6 6 C 1.50692 * 109.52671 * 297.74791 * 5 4 2 7 7 H 1.08009 * 119.99745 * 354.88910 * 6 5 4 8 8 C 1.37874 * 120.00481 * 174.88217 * 6 5 4 9 9 N 1.31518 * 119.99763 * 2.74247 * 8 6 5 10 10 Si 1.86795 * 120.00534 * 182.74050 * 8 6 5 11 11 H 1.48501 * 109.47133 * 270.00487 * 10 8 6 12 12 H 1.48500 * 109.47545 * 150.00352 * 10 8 6 13 13 H 1.48505 * 109.47003 * 30.00331 * 10 8 6 14 14 C 1.53008 * 109.52135 * 177.62428 * 5 4 2 15 15 C 1.50698 * 109.47055 * 56.16828 * 14 5 4 16 16 C 1.38236 * 120.00319 * 266.67962 * 15 14 5 17 17 C 1.38229 * 120.00138 * 179.76694 * 16 15 14 18 18 C 1.38239 * 120.00141 * 0.50269 * 17 16 15 19 19 C 1.38230 * 119.99589 * 359.75295 * 18 17 16 20 20 C 1.38231 * 120.00382 * 359.97438 * 19 18 17 21 21 C 1.53118 * 109.21536 * 57.69081 * 5 4 2 22 22 H 1.08997 * 109.50525 * 182.37170 * 21 5 4 23 23 C 1.53007 * 109.50386 * 62.24843 * 21 5 4 24 24 C 1.53175 * 109.20455 * 302.37397 * 21 5 4 25 25 N 1.46841 * 109.55767 * 59.13893 * 24 21 5 26 26 C 1.46908 * 110.99888 * 174.16255 * 25 24 21 27 27 H 1.08996 * 109.47320 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47041 * 299.97708 * 1 2 3 29 29 H 1.09001 * 109.47117 * 59.97637 * 1 2 3 30 30 H 1.09000 * 109.50241 * 60.86775 * 4 2 1 31 31 H 1.08999 * 109.53747 * 300.76467 * 4 2 1 32 32 H 0.97006 * 119.99728 * 6.54908 * 9 8 6 33 33 H 1.08995 * 109.47375 * 176.17192 * 14 5 4 34 34 H 1.09000 * 109.46666 * 296.17098 * 14 5 4 35 35 H 1.08003 * 119.99885 * 359.97438 * 16 15 14 36 36 H 1.08008 * 120.00114 * 180.23228 * 17 16 15 37 37 H 1.07996 * 119.99822 * 179.72048 * 18 17 16 38 38 H 1.07997 * 119.99897 * 179.97438 * 19 18 17 39 39 H 1.08000 * 120.00343 * 179.97438 * 20 19 18 40 40 H 1.09000 * 109.46913 * 60.00219 * 23 21 5 41 41 H 1.09003 * 109.46892 * 180.02562 * 23 21 5 42 42 H 1.09002 * 109.47277 * 300.00251 * 23 21 5 43 43 H 1.09008 * 109.44308 * 299.11051 * 24 21 5 44 44 H 1.09000 * 109.43667 * 179.16224 * 24 21 5 45 45 H 1.09003 * 109.46822 * 184.21214 * 26 25 24 46 46 H 1.08995 * 109.46717 * 304.20653 * 26 25 24 47 47 H 1.08995 * 109.47262 * 64.20930 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7210 -1.2499 5 6 3.5710 -0.7362 -1.2355 6 6 4.0891 0.6782 -1.2793 7 1 3.4007 1.5021 -1.3972 8 6 5.4418 0.9206 -1.1688 9 7 6.2849 -0.0848 -1.0793 10 14 6.0773 2.6770 -1.1461 11 1 6.3640 3.1177 -2.5350 12 1 7.3221 2.7429 -0.3391 13 1 5.0509 3.5671 -0.5464 14 6 4.0861 -1.5073 -2.4525 15 6 3.5263 -0.8937 -3.7098 16 6 2.3598 -1.3899 -4.2611 17 6 1.8437 -0.8239 -5.4117 18 6 2.4996 0.2317 -6.0171 19 6 3.6690 0.7245 -5.4688 20 6 4.1821 0.1621 -4.3150 21 6 4.0561 -1.4194 0.0461 22 1 5.1452 -1.3954 0.0814 23 6 3.5755 -2.8719 0.0640 24 6 3.4864 -0.6777 1.2592 25 7 2.0193 -0.6917 1.1994 26 6 1.4373 -0.1104 2.4166 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5135 0.8902 29 1 -0.3633 0.5142 -0.8898 30 1 1.6895 -0.1983 -2.1399 31 1 1.6659 -1.7448 -1.2582 32 1 5.9672 -0.9951 -1.1863 33 1 5.1747 -1.4599 -2.4785 34 1 3.7693 -2.5480 -2.3839 35 1 1.8498 -2.2177 -3.7909 36 1 0.9302 -1.2092 -5.8403 37 1 2.0988 0.6710 -6.9186 38 1 4.1817 1.5489 -5.9419 39 1 5.0959 0.5469 -3.8868 40 1 3.9768 -3.3981 -0.8022 41 1 3.9208 -3.3576 0.9767 42 1 2.4862 -2.8947 0.0304 43 1 3.8404 0.3533 1.2532 44 1 3.8174 -1.1700 2.1736 45 1 0.3517 -0.2010 2.3793 46 1 1.8164 -0.6412 3.2898 47 1 1.7119 0.9422 2.4837 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004006540.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:36 Heat of formation + Delta-G solvation = 28.325371 kcal Electronic energy + Delta-G solvation = -25060.965394 eV Core-core repulsion = 22015.326859 eV Total energy + Delta-G solvation = -3045.638534 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 287.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.66540 -38.16417 -35.36674 -32.24468 -31.78273 -30.93113 -30.14317 -27.95021 -26.95586 -25.01599 -24.83759 -23.45456 -21.93102 -21.62424 -20.43876 -19.43574 -18.02786 -16.56781 -15.98439 -14.99513 -14.70529 -14.57426 -14.36464 -13.95221 -13.80940 -13.55376 -12.98664 -12.85543 -12.71513 -12.37665 -12.32267 -12.03575 -11.81195 -11.50174 -11.37604 -11.19334 -11.01334 -10.86740 -10.82238 -10.64768 -10.39142 -10.28283 -10.25087 -10.14631 -10.06707 -9.80012 -9.28695 -8.92018 -8.33334 -8.25877 -8.18780 -7.78417 -7.47473 -6.18024 -4.01217 2.08696 2.14846 3.39570 3.42855 3.57662 4.49227 4.54211 4.67008 5.33494 5.49305 5.54485 5.58342 5.60969 5.66767 5.69358 5.85186 5.93784 5.98988 6.06967 6.11466 6.18877 6.21742 6.23144 6.29589 6.33804 6.41356 6.43991 6.47147 6.56117 6.65533 6.73318 6.76051 6.81365 6.85472 6.93498 6.98762 7.09998 7.12950 7.15534 7.23109 7.34096 7.42004 7.52885 7.61334 7.79511 7.94167 7.98308 8.32154 8.46677 8.90106 9.63442 11.04038 Molecular weight = 287.19amu Principal moments of inertia in cm(-1) A = 0.012486 B = 0.008716 C = 0.006585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.976471 B = 3211.768893 C = 4251.287246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.089 3.911 3 H 0.047 0.953 4 C -0.085 4.085 5 C 0.073 3.927 6 C -0.562 4.562 7 H 0.045 0.955 8 C 0.028 3.972 9 N -0.918 5.918 10 Si 1.049 2.951 11 H -0.289 1.289 12 H -0.286 1.286 13 H -0.292 1.292 14 C -0.087 4.087 15 C -0.031 4.031 16 C -0.130 4.130 17 C -0.132 4.132 18 C -0.144 4.144 19 C -0.130 4.130 20 C -0.089 4.089 21 C -0.092 4.092 22 H 0.091 0.909 23 C -0.140 4.140 24 C 0.080 3.920 25 N -0.535 5.535 26 C 0.024 3.976 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.043 0.957 32 H 0.280 0.720 33 H 0.079 0.921 34 H 0.042 0.958 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.126 0.874 40 H 0.040 0.960 41 H 0.031 0.969 42 H 0.057 0.943 43 H 0.044 0.956 44 H 0.046 0.954 45 H 0.061 0.939 46 H 0.056 0.944 47 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.431 -1.609 -1.349 7.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.019 4.019 3 H 0.065 0.935 4 C -0.122 4.122 5 C 0.073 3.927 6 C -0.600 4.600 7 H 0.064 0.936 8 C -0.175 4.175 9 N -0.560 5.560 10 Si 0.879 3.121 11 H -0.216 1.216 12 H -0.211 1.211 13 H -0.218 1.218 14 C -0.125 4.125 15 C -0.031 4.031 16 C -0.148 4.148 17 C -0.151 4.151 18 C -0.162 4.162 19 C -0.148 4.148 20 C -0.107 4.107 21 C -0.111 4.111 22 H 0.109 0.891 23 C -0.197 4.197 24 C -0.048 4.048 25 N -0.260 5.260 26 C -0.125 4.125 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.061 0.939 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.144 0.856 40 H 0.059 0.941 41 H 0.050 0.950 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.080 0.920 46 H 0.075 0.925 47 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -6.201 -1.187 -1.184 6.424 hybrid contribution -1.206 0.179 -0.111 1.224 sum -7.407 -1.008 -1.295 7.586 Atomic orbital electron populations 1.21952 0.96499 1.01378 1.00552 1.21525 0.92716 0.96800 0.90819 0.93483 1.21579 0.97702 0.97962 0.95002 1.18232 0.90727 0.94813 0.88926 1.21810 0.94107 0.91194 1.52921 0.93639 1.25399 0.93322 1.04685 0.94115 1.70853 1.38196 1.00695 1.46230 0.83830 0.75889 0.75566 0.76844 1.21577 1.21130 1.21845 1.21078 1.01752 0.96551 0.93136 1.19916 0.93510 0.94645 0.95043 1.20998 0.96744 1.00711 0.96351 1.20905 0.99699 0.97634 0.96819 1.20874 0.96714 0.98337 1.00312 1.21082 0.96651 1.00101 0.96978 1.21186 1.00617 0.95182 0.93701 1.21426 1.01695 0.92508 0.95468 0.89078 1.21873 1.01457 0.97347 0.99040 1.21919 0.85640 0.99794 0.97424 1.62016 1.08479 1.54177 1.01339 1.22344 0.99792 0.96965 0.93395 0.92674 0.93445 0.92994 0.92833 0.93836 0.90300 0.90254 0.93933 0.87236 0.87449 0.87514 0.87261 0.85617 0.94105 0.94966 0.92396 0.93799 0.93512 0.91987 0.92513 0.96456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 8.77 37.16 0.33 -1.98 16 2 C 0.09 1.70 2.23 -67.72 -0.15 1.55 16 3 H 0.05 1.02 6.89 -51.93 -0.36 0.66 16 4 C -0.08 -1.69 3.03 -26.65 -0.08 -1.77 16 5 C 0.07 1.58 0.06 -155.54 -0.01 1.57 16 6 C -0.56 -13.64 4.56 -34.45 -0.16 -13.80 16 7 H 0.05 1.18 7.07 -52.48 -0.37 0.81 16 8 C 0.03 0.72 4.59 -17.82 -0.08 0.63 16 9 N -0.92 -24.31 12.22 55.43 0.68 -23.63 16 10 Si 1.05 23.86 29.90 -169.99 -5.08 18.77 16 11 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 14 C -0.09 -1.84 3.92 -27.88 -0.11 -1.95 16 15 C -0.03 -0.63 4.09 -104.62 -0.43 -1.05 16 16 C -0.13 -2.34 8.19 -39.59 -0.32 -2.66 16 17 C -0.13 -2.16 10.05 -39.58 -0.40 -2.56 16 18 C -0.14 -2.35 10.05 -39.58 -0.40 -2.75 16 19 C -0.13 -2.33 10.05 -39.59 -0.40 -2.73 16 20 C -0.09 -1.83 8.71 -39.58 -0.34 -2.17 16 21 C -0.09 -1.95 1.94 -90.47 -0.18 -2.12 16 22 H 0.09 2.19 5.03 -51.93 -0.26 1.93 16 23 C -0.14 -2.64 8.35 37.16 0.31 -2.33 16 24 C 0.08 1.63 4.70 -3.77 -0.02 1.61 16 25 N -0.53 -9.88 4.03 -234.83 -0.95 -10.83 16 26 C 0.02 0.37 9.05 60.07 0.54 0.92 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.68 6.32 -51.93 -0.33 0.35 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.05 1.12 6.48 -51.93 -0.34 0.78 16 31 H 0.04 0.85 6.59 -51.93 -0.34 0.50 16 32 H 0.28 7.24 3.47 -40.82 -0.14 7.10 16 33 H 0.08 1.86 5.42 -51.93 -0.28 1.58 16 34 H 0.04 0.84 6.09 -51.93 -0.32 0.53 16 35 H 0.11 1.83 8.06 -52.48 -0.42 1.40 16 36 H 0.11 1.47 8.06 -52.48 -0.42 1.04 16 37 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 39 H 0.13 2.84 7.34 -52.49 -0.39 2.46 16 40 H 0.04 0.74 6.30 -51.93 -0.33 0.42 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.06 1.09 6.01 -51.93 -0.31 0.77 16 43 H 0.04 1.01 7.31 -51.92 -0.38 0.63 16 44 H 0.05 0.91 8.09 -51.93 -0.42 0.49 16 45 H 0.06 0.88 6.21 -51.93 -0.32 0.55 16 46 H 0.06 0.83 8.09 -51.93 -0.42 0.41 16 47 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 LS Contribution 337.30 15.07 5.08 5.08 Total: -1.00 -25.39 337.30 -9.64 -35.03 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -7.48 Total: 7.17 kcal Atomic # 6 Polarization: -29.71 SS G_CDS: -1.89 Total: -31.60 kcal Atomic # 7 Polarization: -34.19 SS G_CDS: -0.27 Total: -34.46 kcal Atomic # 14 Polarization: 23.86 SS G_CDS: -5.08 Total: 18.77 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -25.39 -9.64 -35.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004006540.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.359 kcal (2) G-P(sol) polarization free energy of solvation -25.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds