Wall clock time and date at job start Tue Mar 31 2020 03:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.45147 * 2 1 4 4 C 1.53033 * 109.46664 * 119.97406 * 2 1 3 5 5 C 1.53119 * 109.27996 * 179.19305 * 4 2 1 6 6 C 1.50703 * 109.52441 * 182.43831 * 5 4 2 7 7 H 1.07999 * 120.00442 * 234.14900 * 6 5 4 8 8 C 1.37881 * 119.99794 * 54.15246 * 6 5 4 9 9 N 1.31512 * 120.00060 * 202.83653 * 8 6 5 10 10 Si 1.86805 * 119.99892 * 22.83489 * 8 6 5 11 11 H 1.48492 * 109.47346 * 84.58149 * 10 8 6 12 12 H 1.48499 * 109.46971 * 204.58407 * 10 8 6 13 13 H 1.48500 * 109.46981 * 324.58102 * 10 8 6 14 14 C 1.53000 * 109.57139 * 62.28525 * 5 4 2 15 15 C 1.50705 * 109.47311 * 61.32350 * 14 5 4 16 16 C 1.38229 * 119.99555 * 271.48155 * 15 14 5 17 17 C 1.38245 * 119.99658 * 179.78832 * 16 15 14 18 18 C 1.38229 * 119.99549 * 0.46496 * 17 16 15 19 19 C 1.38238 * 120.00712 * 359.76459 * 18 17 16 20 20 C 1.38228 * 119.99861 * 91.75513 * 15 14 5 21 21 C 1.53110 * 109.16263 * 302.34724 * 5 4 2 22 22 H 1.09000 * 109.54029 * 297.69226 * 21 5 4 23 23 C 1.53000 * 109.50562 * 177.59000 * 21 5 4 24 24 C 1.53040 * 109.27817 * 57.65169 * 21 5 4 25 25 N 1.46844 * 109.52469 * 300.82047 * 24 21 5 26 26 C 1.46902 * 110.99838 * 185.83596 * 25 24 21 27 27 H 1.08996 * 109.46828 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46589 * 299.96840 * 1 2 3 29 29 H 1.08997 * 109.47488 * 59.97175 * 1 2 3 30 30 H 1.09003 * 109.50455 * 59.25775 * 4 2 1 31 31 H 1.08997 * 109.53642 * 299.15741 * 4 2 1 32 32 H 0.96998 * 119.99904 * 179.97438 * 9 8 6 33 33 H 1.09001 * 109.47012 * 181.32080 * 14 5 4 34 34 H 1.08997 * 109.47133 * 301.31987 * 14 5 4 35 35 H 1.08000 * 120.00374 * 359.97438 * 16 15 14 36 36 H 1.07998 * 119.99980 * 180.25312 * 17 16 15 37 37 H 1.08006 * 119.99551 * 179.79060 * 18 17 16 38 38 H 1.07993 * 120.00348 * 179.97438 * 19 18 17 39 39 H 1.08007 * 120.00548 * 359.97438 * 20 15 14 40 40 H 1.08992 * 109.47507 * 300.20008 * 23 21 5 41 41 H 1.09008 * 109.46866 * 60.20225 * 23 21 5 42 42 H 1.09005 * 109.47297 * 180.19222 * 23 21 5 43 43 H 1.09001 * 109.46342 * 180.79850 * 24 21 5 44 44 H 1.09008 * 109.45318 * 60.83432 * 24 21 5 45 45 H 1.08998 * 109.47003 * 56.05010 * 26 25 24 46 46 H 1.09005 * 109.47046 * 176.04670 * 26 25 24 47 47 H 1.09000 * 109.47245 * 296.04753 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0400 -0.7209 1.2499 5 6 3.5710 -0.7360 1.2354 6 6 4.0785 -1.4968 2.4333 7 1 4.7862 -1.0353 3.1060 8 6 3.6393 -2.7820 2.6704 9 7 3.6971 -3.2832 3.8849 10 14 2.9620 -3.8115 1.2665 11 1 4.0834 -4.4698 0.5495 12 1 2.0458 -4.8467 1.8089 13 1 2.2182 -2.9365 0.3250 14 6 4.0982 0.6996 1.2806 15 6 3.6427 1.3622 2.5552 16 6 2.4283 2.0213 2.5956 17 6 2.0084 2.6254 3.7660 18 6 2.8073 2.5785 4.8931 19 6 4.0239 1.9234 4.8514 20 6 4.4417 1.3156 3.6822 21 6 4.0548 -1.4187 -0.0468 22 1 3.7131 -2.4537 -0.0600 23 6 5.5836 -1.3847 -0.0982 24 6 3.4864 -0.6776 -1.2592 25 7 2.0192 -0.6917 -1.1995 26 6 1.4372 -0.1104 -2.4166 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5134 0.8904 29 1 -0.3634 0.5142 -0.8897 30 1 1.6661 -1.7447 1.2575 31 1 1.6896 -0.1988 2.1402 32 1 3.3877 -4.1872 4.0518 33 1 5.1877 0.6878 1.2466 34 1 3.7140 1.2548 0.4250 35 1 1.8062 2.0618 1.7137 36 1 1.0578 3.1369 3.7988 37 1 2.4807 3.0533 5.8065 38 1 4.6481 1.8871 5.7318 39 1 5.3924 0.8041 3.6495 40 1 5.9247 -0.3497 -0.0836 41 1 5.9879 -1.9128 0.7655 42 1 5.9273 -1.8679 -1.0129 43 1 3.8174 -1.1697 -2.1737 44 1 3.8403 0.3534 -1.2531 45 1 1.8128 -0.6442 -3.2896 46 1 0.3513 -0.1970 -2.3772 47 1 1.7156 0.9411 -2.4861 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004006541.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:39 Heat of formation + Delta-G solvation = 26.620499 kcal Electronic energy + Delta-G solvation = -25152.344273 eV Core-core repulsion = 22106.631810 eV Total energy + Delta-G solvation = -3045.712463 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 287.194 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.46500 -39.49395 -36.71058 -34.21695 -33.89658 -32.35073 -31.55886 -29.80985 -28.58982 -27.38347 -25.99786 -25.02543 -23.30087 -22.98593 -22.19432 -21.27056 -19.94656 -18.23632 -17.23326 -16.80612 -16.47724 -16.16752 -15.94060 -15.73692 -15.34853 -15.21974 -14.76232 -14.38625 -14.10448 -14.03786 -13.89656 -13.67971 -13.41437 -13.24267 -12.98068 -12.74390 -12.65549 -12.49263 -12.38012 -12.25774 -12.11173 -11.98488 -11.88198 -11.69582 -11.55928 -11.35758 -10.95588 -10.58386 -10.22255 -10.12591 -9.56901 -9.25793 -8.91864 -8.19715 -6.05977 0.70292 0.73731 1.37787 1.47525 1.58649 2.46276 3.08894 3.14228 3.16980 4.05327 4.08514 4.13589 4.15257 4.24518 4.27709 4.35294 4.42642 4.54121 4.58817 4.63411 4.67555 4.70378 4.77050 4.84661 4.85554 4.91227 4.93746 4.95147 5.00304 5.05477 5.08300 5.19033 5.23081 5.27459 5.35231 5.36401 5.43320 5.50787 5.59184 5.73064 5.75023 5.78639 5.86956 5.99322 6.04990 6.35871 6.36550 6.38936 6.56247 6.96469 7.53694 8.95832 Molecular weight = 287.19amu Principal moments of inertia in cm(-1) A = 0.013061 B = 0.009103 C = 0.006976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.201431 B = 3075.266128 C = 4012.530293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.085 3.915 3 H 0.046 0.954 4 C -0.105 4.105 5 C 0.064 3.936 6 C -0.482 4.482 7 H 0.046 0.954 8 C 0.031 3.969 9 N -0.938 5.938 10 Si 0.886 3.114 11 H -0.294 1.294 12 H -0.330 1.330 13 H -0.182 1.182 14 C -0.058 4.058 15 C -0.056 4.056 16 C -0.131 4.131 17 C -0.129 4.129 18 C -0.141 4.141 19 C -0.135 4.135 20 C -0.120 4.120 21 C -0.099 4.099 22 H 0.045 0.955 23 C -0.132 4.132 24 C 0.067 3.933 25 N -0.556 5.556 26 C 0.024 3.976 27 H 0.047 0.953 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.041 0.959 31 H 0.050 0.950 32 H 0.254 0.746 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.127 0.873 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.124 0.876 39 H 0.100 0.900 40 H 0.063 0.937 41 H 0.039 0.961 42 H 0.054 0.946 43 H 0.075 0.925 44 H 0.042 0.958 45 H 0.071 0.929 46 H 0.077 0.923 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.157 12.149 -9.424 15.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 H 0.064 0.936 4 C -0.143 4.143 5 C 0.063 3.937 6 C -0.520 4.520 7 H 0.065 0.935 8 C -0.166 4.166 9 N -0.579 5.579 10 Si 0.717 3.283 11 H -0.222 1.222 12 H -0.260 1.260 13 H -0.105 1.105 14 C -0.095 4.095 15 C -0.056 4.056 16 C -0.149 4.149 17 C -0.146 4.146 18 C -0.158 4.158 19 C -0.153 4.153 20 C -0.138 4.138 21 C -0.118 4.118 22 H 0.063 0.937 23 C -0.190 4.190 24 C -0.061 4.061 25 N -0.281 5.281 26 C -0.123 4.123 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.145 0.855 36 H 0.160 0.840 37 H 0.157 0.843 38 H 0.142 0.858 39 H 0.118 0.882 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.073 0.927 43 H 0.093 0.907 44 H 0.060 0.940 45 H 0.089 0.911 46 H 0.096 0.904 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -4.346 11.550 -9.305 15.455 hybrid contribution 0.405 -0.822 0.202 0.939 sum -3.941 10.727 -9.103 14.611 Atomic orbital electron populations 1.21914 0.93971 1.01874 1.02402 1.21692 0.95492 0.95151 0.89977 0.93650 1.22052 0.97227 0.99308 0.95675 1.18349 0.91821 0.91679 0.91886 1.21107 1.24883 0.97811 1.08194 0.93538 1.25482 0.95735 0.99574 0.95818 1.70199 1.49935 1.16404 1.21329 0.87288 0.78863 0.78842 0.83296 1.22212 1.26036 1.10485 1.20660 0.99991 0.95377 0.93493 1.19900 0.94619 0.95176 0.95954 1.21184 0.95830 0.98849 0.99025 1.21354 1.00255 1.00127 0.92901 1.21289 0.94573 1.00730 0.99241 1.21290 0.97751 0.98643 0.97651 1.21071 1.00266 0.98628 0.93870 1.21671 0.95835 0.98808 0.95466 0.93690 1.21677 0.95008 1.01757 1.00520 1.22133 0.86998 0.98942 0.97983 1.61856 1.07507 1.55929 1.02842 1.22447 1.00869 0.97329 0.91683 0.93386 0.91844 0.90691 0.94045 0.93091 0.93674 0.92144 0.91411 0.85514 0.84024 0.84333 0.85825 0.88195 0.91793 0.94152 0.92734 0.90676 0.93966 0.91062 0.90427 0.95210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 8.76 71.98 0.63 -3.20 16 2 C 0.08 2.65 1.86 44.94 0.08 2.73 16 3 H 0.05 1.35 5.17 -2.39 -0.01 1.34 16 4 C -0.10 -4.23 3.11 30.64 0.10 -4.13 16 5 C 0.06 2.64 0.06 -52.85 0.00 2.64 16 6 C -0.48 -25.37 6.71 25.60 0.17 -25.20 16 7 H 0.05 2.70 5.86 -2.91 -0.02 2.68 16 8 C 0.03 1.78 5.21 84.66 0.44 2.22 16 9 N -0.94 -58.79 13.96 21.45 0.30 -58.49 16 10 Si 0.89 44.53 23.17 68.60 1.59 46.11 16 11 H -0.29 -14.87 7.11 99.48 0.71 -14.16 16 12 H -0.33 -17.59 7.11 99.48 0.71 -16.88 16 13 H -0.18 -8.28 4.41 99.48 0.44 -7.84 16 14 C -0.06 -2.12 3.47 29.85 0.10 -2.02 16 15 C -0.06 -2.11 4.23 -19.87 -0.08 -2.19 16 16 C -0.13 -4.28 7.77 22.27 0.17 -4.10 16 17 C -0.13 -3.79 10.05 22.27 0.22 -3.57 16 18 C -0.14 -4.26 10.05 22.27 0.22 -4.04 16 19 C -0.14 -4.70 10.05 22.27 0.22 -4.48 16 20 C -0.12 -4.73 8.32 22.27 0.19 -4.54 16 21 C -0.10 -3.83 1.49 -10.74 -0.02 -3.84 16 22 H 0.05 1.97 2.53 -2.39 -0.01 1.96 16 23 C -0.13 -4.74 8.57 71.98 0.62 -4.12 16 24 C 0.07 2.08 4.50 86.33 0.39 2.47 16 25 N -0.56 -17.01 4.62 -897.15 -4.15 -21.16 16 26 C 0.02 0.55 9.06 127.69 1.16 1.70 16 27 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 29 H 0.07 1.59 6.32 -2.39 -0.02 1.58 16 30 H 0.04 1.88 4.02 -2.39 -0.01 1.87 16 31 H 0.05 2.17 5.98 -2.39 -0.01 2.16 16 32 H 0.25 15.44 8.31 -92.71 -0.77 14.67 16 33 H 0.06 2.22 6.26 -2.39 -0.01 2.21 16 34 H 0.07 2.17 4.88 -2.39 -0.01 2.16 16 35 H 0.13 3.67 6.26 -2.91 -0.02 3.65 16 36 H 0.14 3.22 8.06 -2.91 -0.02 3.19 16 37 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 38 H 0.12 3.82 8.06 -2.91 -0.02 3.80 16 39 H 0.10 4.17 7.23 -2.91 -0.02 4.15 16 40 H 0.06 2.04 6.36 -2.39 -0.02 2.02 16 41 H 0.04 1.68 7.31 -2.38 -0.02 1.66 16 42 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 43 H 0.07 2.10 8.09 -2.39 -0.02 2.08 16 44 H 0.04 1.21 6.54 -2.38 -0.02 1.19 16 45 H 0.07 1.46 8.10 -2.39 -0.02 1.44 16 46 H 0.08 1.59 6.20 -2.38 -0.01 1.57 16 47 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -65.26 325.79 3.05 -62.21 By element: Atomic # 1 Polarization: 24.30 SS G_CDS: 0.69 Total: 25.00 kcal Atomic # 6 Polarization: -58.29 SS G_CDS: 4.61 Total: -53.67 kcal Atomic # 7 Polarization: -75.80 SS G_CDS: -3.85 Total: -79.65 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.59 Total: 46.11 kcal Total: -65.26 3.05 -62.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004006541.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.831 kcal (2) G-P(sol) polarization free energy of solvation -65.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds