Wall clock time and date at job start Tue Mar 31 2020 03:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31444 * 1 3 3 Si 1.86800 * 119.99876 * 2 1 4 4 H 1.48496 * 109.47118 * 239.99505 * 3 2 1 5 5 H 1.48506 * 109.47258 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47268 * 119.99780 * 3 2 1 7 7 C 1.38752 * 120.00243 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00215 * 180.02562 * 7 2 1 9 9 O 1.34919 * 120.00033 * 0.02562 * 7 2 1 10 10 C 1.34307 * 117.00095 * 179.97438 * 9 7 2 11 11 O 1.21213 * 120.00341 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99804 * 180.02562 * 10 9 7 13 13 C 1.53007 * 109.46773 * 179.97438 * 12 10 9 14 14 C 1.50706 * 109.46773 * 180.02562 * 13 12 10 15 15 N 1.29830 * 118.31791 * 0.02562 * 14 13 12 16 16 C 1.35655 * 121.62165 * 180.02562 * 15 14 13 17 17 C 1.39636 * 121.65575 * 179.97438 * 16 15 14 18 18 C 1.37668 * 119.68891 * 180.02562 * 17 16 15 19 19 C 1.38881 * 120.81853 * 0.02562 * 18 17 16 20 20 C 1.37767 * 120.56958 * 359.92573 * 19 18 17 21 21 C 1.39336 * 119.51575 * 0.09772 * 20 19 18 22 22 C 1.47048 * 121.93216 * 179.64853 * 21 20 19 23 23 O 1.21721 * 121.30024 * 0.27263 * 22 21 20 24 24 N 1.35350 * 117.40183 * 179.72717 * 22 21 20 25 25 H 0.97001 * 119.69487 * 180.25380 * 24 22 21 26 26 H 0.97001 * 120.00019 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.46937 * 60.00691 * 12 10 9 28 28 H 1.08997 * 109.47333 * 299.99763 * 12 10 9 29 29 H 1.08998 * 109.46782 * 60.00648 * 13 12 10 30 30 H 1.08991 * 109.47696 * 300.00162 * 13 12 10 31 31 H 1.08004 * 120.15679 * 359.97438 * 17 16 15 32 32 H 1.07995 * 119.58900 * 179.97438 * 18 17 16 33 33 H 1.08001 * 119.71622 * 180.02562 * 19 18 17 34 34 H 1.07997 * 120.24166 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.1022 1.6964 -1.2124 5 1 1.2834 2.7465 -0.0006 6 1 3.1021 1.6965 1.2125 7 6 2.0083 -1.2016 0.0005 8 1 3.0883 -1.2016 0.0010 9 8 1.3337 -2.3701 0.0005 10 6 2.0652 -3.4964 0.0005 11 8 3.2757 -3.4330 0.0010 12 6 1.3810 -4.8392 0.0000 13 6 2.4349 -5.9485 -0.0006 14 6 1.7507 -7.2913 -0.0018 15 7 0.4527 -7.3212 -0.0027 16 6 -0.2317 -8.4924 -0.0033 17 6 -1.6277 -8.5253 -0.0038 18 6 -2.2812 -9.7370 -0.0039 19 6 -1.5691 -10.9294 -0.0029 20 6 -0.1915 -10.9228 -0.0035 21 6 0.4892 -9.7070 -0.0029 22 6 1.9580 -9.6379 0.0042 23 8 2.6385 -10.6471 0.0050 24 7 2.5239 -8.4084 -0.0015 25 1 3.4902 -8.3241 -0.0008 26 1 -0.4850 0.8401 -0.0004 27 1 0.7587 -4.9295 -0.8903 28 1 0.7580 -4.9300 0.8897 29 1 3.0576 -5.8584 0.8895 30 1 3.0577 -5.8577 -0.8904 31 1 -2.1922 -7.6045 -0.0032 32 1 -3.3609 -9.7606 -0.0038 33 1 -2.1000 -11.8699 -0.0034 34 1 0.3569 -11.8532 -0.0032 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004251223.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:18 Heat of formation + Delta-G solvation = -74.071757 kcal Electronic energy + Delta-G solvation = -21255.763985 eV Core-core repulsion = 17732.759984 eV Total energy + Delta-G solvation = -3523.004002 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.72107 -39.06979 -38.56461 -37.94775 -35.38786 -33.80500 -33.11186 -32.13359 -31.42744 -29.56181 -26.61058 -25.02029 -24.67109 -22.61220 -22.00352 -19.78669 -19.43590 -18.87525 -17.79306 -17.58432 -16.42380 -16.31670 -15.89256 -15.24193 -15.19128 -14.98320 -14.48330 -14.35169 -14.07867 -13.93479 -13.33979 -13.26977 -12.51360 -12.34181 -12.22076 -12.01071 -11.66535 -11.52976 -11.25522 -10.92217 -10.53995 -10.52842 -10.46083 -10.36096 -10.10850 -9.80029 -9.38170 -9.04405 -8.57694 -8.25322 -6.40740 -4.09026 0.32791 0.60058 1.98664 2.42331 2.56633 3.12744 3.18702 3.22628 3.53388 3.67103 3.77606 3.91164 4.04657 4.34431 4.58169 4.67163 4.86216 4.98256 5.08558 5.11024 5.19464 5.26075 5.36675 5.68456 5.70706 5.80781 5.94276 6.14502 6.15874 6.21939 6.28931 6.34142 6.56153 6.76364 7.39076 7.49403 7.73457 7.95176 8.69935 9.07797 9.85240 10.77032 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.029567 B = 0.003141 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.767469 B = 8911.266654 C = 9837.586202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.042 3.958 3 Si 0.943 3.057 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.384 4.384 8 H 0.095 0.905 9 O -0.212 6.212 10 C 0.395 3.605 11 O -0.565 6.565 12 C -0.083 4.083 13 C -0.065 4.065 14 C 0.407 3.593 15 N -0.515 5.515 16 C 0.162 3.838 17 C -0.111 4.111 18 C -0.073 4.073 19 C -0.146 4.146 20 C -0.041 4.041 21 C -0.206 4.206 22 C 0.552 3.448 23 O -0.518 6.518 24 N -0.651 5.651 25 H 0.421 0.579 26 H 0.270 0.730 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.143 0.857 32 H 0.134 0.866 33 H 0.131 0.869 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.053 -18.277 -0.003 18.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.162 4.162 3 Si 0.768 3.232 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.460 4.460 8 H 0.113 0.887 9 O -0.118 6.118 10 C 0.242 3.758 11 O -0.463 6.463 12 C -0.122 4.122 13 C -0.104 4.104 14 C 0.139 3.861 15 N -0.237 5.237 16 C 0.053 3.947 17 C -0.130 4.130 18 C -0.092 4.092 19 C -0.164 4.164 20 C -0.061 4.061 21 C -0.212 4.212 22 C 0.345 3.655 23 O -0.393 6.393 24 N -0.295 5.295 25 H 0.260 0.740 26 H 0.080 0.920 27 H 0.120 0.880 28 H 0.120 0.880 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.161 0.839 32 H 0.151 0.849 33 H 0.149 0.851 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.338 -18.171 -0.005 18.475 hybrid contribution 1.234 0.104 0.004 1.239 sum -2.103 -18.068 -0.001 18.190 Atomic orbital electron populations 1.69986 1.05984 1.27786 1.46330 1.25331 0.95795 0.98862 0.96194 0.85756 0.78638 0.79532 0.79308 1.19516 1.20398 1.19508 1.21167 0.92322 0.79922 1.52616 0.88733 1.83877 1.39331 1.13374 1.75237 1.23201 0.86602 0.87472 0.78551 1.90550 1.15779 1.88296 1.51682 1.20747 0.97247 0.87732 1.06428 1.20622 0.97956 0.85726 1.06055 1.23115 0.87694 0.88841 0.86403 1.68691 1.04478 1.26482 1.24046 1.18904 0.94424 0.87052 0.94333 1.20940 0.91491 0.99119 1.01426 1.21320 1.00531 0.91856 0.95506 1.21164 0.93583 0.98666 1.02981 1.20981 0.94266 0.96638 0.94182 1.20548 0.92117 0.95908 1.12645 1.18419 0.88651 0.82390 0.76041 1.90891 1.65175 1.33798 1.49445 1.44510 1.12816 1.06623 1.65556 0.74041 0.92018 0.87963 0.87962 0.87332 0.87335 0.83889 0.84858 0.85115 0.84694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.04 13.67 55.48 0.76 -24.28 16 2 C 0.04 1.18 5.49 -17.53 -0.10 1.08 16 3 Si 0.94 20.99 29.55 -169.99 -5.02 15.96 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.38 -11.13 9.64 30.92 0.30 -10.83 16 8 H 0.10 2.74 6.86 -52.49 -0.36 2.38 16 9 O -0.21 -5.89 9.75 -20.69 -0.20 -6.09 16 10 C 0.39 9.06 7.91 36.01 0.28 9.34 16 11 O -0.56 -13.91 15.22 -19.05 -0.29 -14.20 16 12 C -0.08 -1.36 4.99 -27.88 -0.14 -1.49 16 13 C -0.06 -0.81 4.91 -27.88 -0.14 -0.95 16 14 C 0.41 4.92 7.62 -155.22 -1.18 3.74 16 15 N -0.52 -6.93 8.84 -8.19 -0.07 -7.01 16 16 C 0.16 2.08 6.63 -84.51 -0.56 1.52 16 17 C -0.11 -1.18 10.03 -39.27 -0.39 -1.58 16 18 C -0.07 -0.62 10.00 -39.55 -0.40 -1.01 16 19 C -0.15 -1.23 10.02 -39.52 -0.40 -1.63 16 20 C -0.04 -0.44 9.68 -39.35 -0.38 -0.82 16 21 C -0.21 -2.62 5.89 -104.78 -0.62 -3.24 16 22 C 0.55 7.33 7.99 -12.43 -0.10 7.23 16 23 O -0.52 -7.95 17.48 5.17 0.09 -7.86 16 24 N -0.65 -7.19 5.27 -10.46 -0.06 -7.25 16 25 H 0.42 3.56 8.75 -40.82 -0.36 3.20 16 26 H 0.27 7.18 8.31 -40.82 -0.34 6.85 16 27 H 0.10 1.61 8.02 -51.93 -0.42 1.19 16 28 H 0.10 1.61 8.02 -51.93 -0.42 1.19 16 29 H 0.11 1.28 8.10 -51.93 -0.42 0.86 16 30 H 0.11 1.28 8.10 -51.93 -0.42 0.86 16 31 H 0.14 1.40 8.06 -52.48 -0.42 0.98 16 32 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 34 H 0.14 1.32 7.83 -52.49 -0.41 0.91 16 LS Contribution 310.05 15.07 4.67 4.67 Total: -1.00 -34.99 310.05 -7.14 -42.13 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -3.21 Total: 2.56 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -3.82 Total: 1.36 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 0.63 Total: -38.54 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -0.40 Total: -28.15 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.99 -7.14 -42.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004251223.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.939 kcal (2) G-P(sol) polarization free energy of solvation -34.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds