Wall clock time and date at job start Tue Mar 31 2020 03:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31390 * 1 3 3 Si 1.86795 * 119.99970 * 2 1 4 4 H 1.48504 * 109.47242 * 240.00180 * 3 2 1 5 5 H 1.48499 * 109.47586 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47072 * 120.00467 * 3 2 1 7 7 C 1.38861 * 119.99890 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00036 * 179.97438 * 7 2 1 9 9 O 1.34796 * 120.00000 * 0.02562 * 7 2 1 10 10 C 1.34867 * 116.99989 * 180.02562 * 9 7 2 11 11 O 1.21644 * 119.99908 * 359.97438 * 10 9 7 12 12 C 1.46423 * 120.00043 * 179.97438 * 10 9 7 13 13 N 1.29887 * 119.56074 * 359.97438 * 12 10 9 14 14 N 1.39861 * 121.11291 * 180.17751 * 13 12 10 15 15 C 1.39986 * 119.79269 * 199.11248 * 14 13 12 16 16 C 1.38894 * 120.07208 * 311.18012 * 15 14 13 17 17 C 1.38102 * 119.92836 * 179.77101 * 16 15 14 18 18 C 1.38295 * 120.06760 * 0.51023 * 17 16 15 19 19 C 1.38287 * 120.14650 * 359.74410 * 18 17 16 20 20 C 1.38105 * 120.07129 * 359.97438 * 19 18 17 21 21 C 1.34729 * 120.41884 * 19.11142 * 14 13 12 22 22 O 1.21240 * 120.11546 * 179.72753 * 21 14 13 23 23 C 1.50768 * 119.77199 * 359.77301 * 21 14 13 24 24 C 1.50544 * 119.56247 * 179.97438 * 12 10 9 25 25 H 0.96997 * 119.99761 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.03388 * 0.02562 * 16 15 14 27 27 H 1.07995 * 119.96331 * 180.25213 * 17 16 15 28 28 H 1.07998 * 119.92231 * 179.72545 * 18 17 16 29 29 H 1.08005 * 119.96146 * 179.97438 * 19 18 17 30 30 H 1.08003 * 120.03156 * 180.02562 * 20 19 18 31 31 H 1.09000 * 109.50757 * 206.77150 * 23 21 14 32 32 H 1.08994 * 109.51376 * 86.62916 * 23 21 14 33 33 H 1.09001 * 109.44655 * 25.74507 * 24 12 10 34 34 H 1.09000 * 109.43099 * 265.80706 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 3.1016 1.6964 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1017 1.6963 1.2125 7 6 2.0082 -1.2026 -0.0005 8 1 3.0882 -1.2026 -0.0010 9 8 1.3342 -2.3699 -0.0016 10 6 2.0687 -3.5010 -0.0015 11 8 3.2835 -3.4374 -0.0010 12 6 1.4039 -4.8057 -0.0021 13 7 0.1064 -4.8637 -0.0021 14 7 -0.5621 -6.0922 0.0011 15 6 -1.9028 -6.1556 -0.3967 16 6 -2.8277 -5.2627 0.1291 17 6 -4.1486 -5.3248 -0.2690 18 6 -4.5529 -6.2815 -1.1821 19 6 -3.6355 -7.1754 -1.7035 20 6 -2.3119 -7.1148 -1.3139 21 6 0.0761 -7.2151 0.3846 22 8 -0.5102 -8.2763 0.3900 23 6 1.5215 -7.1472 0.8081 24 6 2.2335 -6.0620 -0.0026 25 1 -0.4849 0.8400 0.0004 26 1 -2.5134 -4.5180 0.8453 27 1 -4.8675 -4.6282 0.1364 28 1 -5.5873 -6.3308 -1.4884 29 1 -3.9546 -7.9216 -2.4161 30 1 -1.5959 -7.8130 -1.7218 31 1 1.9995 -8.1098 0.6264 32 1 1.5790 -6.9060 1.8694 33 1 3.2060 -5.8548 0.4440 34 1 2.3706 -6.4055 -1.0279 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004563284.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:21 Heat of formation + Delta-G solvation = -31.779237 kcal Electronic energy + Delta-G solvation = -22050.039884 eV Core-core repulsion = 18528.869824 eV Total energy + Delta-G solvation = -3521.170060 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.98736 -39.20531 -38.53232 -37.08089 -35.41386 -34.04288 -32.44008 -31.43990 -30.85647 -29.59725 -26.11898 -25.42141 -23.88085 -22.66065 -22.26122 -20.64102 -18.42856 -18.07529 -17.58938 -17.34062 -16.23802 -16.08488 -15.83483 -15.00463 -14.87499 -14.66062 -14.43701 -14.23662 -13.86628 -13.30697 -13.22692 -12.94513 -12.82378 -12.41751 -12.24194 -11.83221 -11.73016 -11.38903 -11.33349 -10.99195 -10.73399 -10.57704 -10.55746 -10.06179 -9.71000 -9.46686 -9.16114 -8.84813 -8.77078 -8.13511 -6.63726 -4.24329 1.20921 1.26093 1.48714 2.25663 2.50679 3.08148 3.08412 3.13017 3.58364 3.73247 3.80606 4.08635 4.32173 4.54796 4.92019 4.97642 4.98991 5.00945 5.05681 5.17583 5.27754 5.48246 5.49892 5.64382 5.68900 5.70122 6.04615 6.11588 6.31303 6.48615 6.55030 6.58959 6.66025 7.04271 7.17237 7.68313 7.71839 8.06362 8.47668 8.81753 9.60590 10.51374 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.016817 B = 0.004945 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.625816 B = 5661.161471 C = 7114.128019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.044 3.956 3 Si 0.950 3.050 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.371 4.371 8 H 0.103 0.897 9 O -0.176 6.176 10 C 0.430 3.570 11 O -0.545 6.545 12 C 0.122 3.878 13 N -0.194 5.194 14 N -0.415 5.415 15 C 0.158 3.842 16 C -0.100 4.100 17 C -0.110 4.110 18 C -0.124 4.124 19 C -0.112 4.112 20 C -0.107 4.107 21 C 0.495 3.505 22 O -0.516 6.516 23 C -0.138 4.138 24 C -0.105 4.105 25 H 0.276 0.724 26 H 0.135 0.865 27 H 0.128 0.872 28 H 0.123 0.877 29 H 0.126 0.874 30 H 0.123 0.877 31 H 0.119 0.881 32 H 0.109 0.891 33 H 0.118 0.882 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.189 -10.702 -0.788 11.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.164 4.164 3 Si 0.773 3.227 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.448 4.448 8 H 0.121 0.879 9 O -0.079 6.079 10 C 0.277 3.723 11 O -0.443 6.443 12 C -0.069 4.069 13 N -0.006 5.006 14 N -0.228 5.228 15 C 0.068 3.932 16 C -0.120 4.120 17 C -0.128 4.128 18 C -0.143 4.143 19 C -0.131 4.131 20 C -0.127 4.127 21 C 0.284 3.716 22 O -0.388 6.388 23 C -0.178 4.178 24 C -0.145 4.145 25 H 0.086 0.914 26 H 0.153 0.847 27 H 0.146 0.854 28 H 0.141 0.859 29 H 0.144 0.856 30 H 0.141 0.859 31 H 0.137 0.863 32 H 0.128 0.872 33 H 0.137 0.863 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.199 -10.699 -0.756 11.919 hybrid contribution 1.011 0.276 0.044 1.049 sum -4.188 -10.424 -0.712 11.256 Atomic orbital electron populations 1.69991 1.06261 1.28584 1.42318 1.25525 0.95888 0.99285 0.95685 0.85645 0.78714 0.78662 0.79668 1.19118 1.20123 1.19125 1.21456 0.92806 0.79630 1.50862 0.87947 1.84008 1.38944 1.13060 1.71865 1.19428 0.85412 0.84025 0.83440 1.90717 1.13818 1.86799 1.52938 1.24152 0.90131 0.95258 0.97332 1.75480 1.09836 1.03282 1.12020 1.46446 1.09735 1.04688 1.61956 1.17383 0.80888 0.98454 0.96514 1.21218 0.92266 0.98919 0.99621 1.21046 0.95349 0.98585 0.97831 1.21177 0.99596 0.95707 0.97784 1.20928 0.92433 0.99436 1.00311 1.21027 0.97009 0.98831 0.95843 1.21432 0.90029 0.83266 0.76918 1.90716 1.68204 1.27998 1.51881 1.21864 0.90766 1.02290 1.02927 1.20903 1.00857 0.89965 1.02725 0.91400 0.84719 0.85357 0.85871 0.85648 0.85884 0.86284 0.87243 0.86347 0.88284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.31 13.67 55.49 0.76 -22.55 16 2 C 0.04 1.17 5.50 -17.51 -0.10 1.08 16 3 Si 0.95 19.91 29.55 -169.99 -5.02 14.89 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.37 -10.36 9.65 30.96 0.30 -10.06 16 8 H 0.10 2.82 6.86 -52.49 -0.36 2.46 16 9 O -0.18 -4.89 9.52 -21.84 -0.21 -5.10 16 10 C 0.43 10.31 7.84 34.02 0.27 10.58 16 11 O -0.55 -13.58 15.48 -19.38 -0.30 -13.88 16 12 C 0.12 2.36 6.77 -80.20 -0.54 1.82 16 13 N -0.19 -3.90 10.88 34.86 0.38 -3.52 16 14 N -0.41 -7.46 3.58 -9.84 -0.04 -7.49 16 15 C 0.16 2.73 5.66 -83.65 -0.47 2.26 16 16 C -0.10 -1.64 9.73 -39.39 -0.38 -2.02 16 17 C -0.11 -1.47 10.04 -39.61 -0.40 -1.86 16 18 C -0.12 -1.49 10.04 -39.54 -0.40 -1.89 16 19 C -0.11 -1.42 10.04 -39.61 -0.40 -1.82 16 20 C -0.11 -1.64 8.70 -39.39 -0.34 -1.98 16 21 C 0.49 8.08 7.31 -10.97 -0.08 8.00 16 22 O -0.52 -9.25 15.66 5.59 0.09 -9.16 16 23 C -0.14 -1.74 6.20 -27.83 -0.17 -1.91 16 24 C -0.10 -1.48 5.85 -27.94 -0.16 -1.64 16 25 H 0.28 7.00 8.31 -40.82 -0.34 6.66 16 26 H 0.13 2.30 8.06 -52.49 -0.42 1.88 16 27 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 28 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.13 1.23 8.06 -52.48 -0.42 0.80 16 30 H 0.12 1.85 7.39 -52.48 -0.39 1.46 16 31 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.12 1.58 7.54 -51.93 -0.39 1.19 16 34 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 309.73 15.07 4.67 4.67 Total: -1.00 -32.58 309.73 -5.79 -38.36 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -3.23 Total: 3.24 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -2.88 Total: 0.55 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: 1.10 Total: -33.56 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.42 Total: -28.15 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.58 -5.79 -38.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004563284.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.584 kcal (2) G-P(sol) polarization free energy of solvation -32.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds