Wall clock time and date at job start Tue Mar 31 2020 03:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31390 * 1 3 3 Si 1.86795 * 119.99970 * 2 1 4 4 H 1.48504 * 109.47242 * 240.00180 * 3 2 1 5 5 H 1.48499 * 109.47586 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47072 * 120.00467 * 3 2 1 7 7 C 1.38861 * 119.99890 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00036 * 179.97438 * 7 2 1 9 9 O 1.34796 * 120.00000 * 0.02562 * 7 2 1 10 10 C 1.34867 * 116.99989 * 180.02562 * 9 7 2 11 11 O 1.21644 * 119.99908 * 359.97438 * 10 9 7 12 12 C 1.46423 * 120.00043 * 179.97438 * 10 9 7 13 13 N 1.29887 * 119.56074 * 359.97438 * 12 10 9 14 14 N 1.39861 * 121.11291 * 180.17751 * 13 12 10 15 15 C 1.39986 * 119.79269 * 199.11248 * 14 13 12 16 16 C 1.38894 * 120.07208 * 311.18012 * 15 14 13 17 17 C 1.38102 * 119.92836 * 179.77101 * 16 15 14 18 18 C 1.38295 * 120.06760 * 0.51023 * 17 16 15 19 19 C 1.38287 * 120.14650 * 359.74410 * 18 17 16 20 20 C 1.38105 * 120.07129 * 359.97438 * 19 18 17 21 21 C 1.34729 * 120.41884 * 19.11142 * 14 13 12 22 22 O 1.21240 * 120.11546 * 179.72753 * 21 14 13 23 23 C 1.50768 * 119.77199 * 359.77301 * 21 14 13 24 24 C 1.50544 * 119.56247 * 179.97438 * 12 10 9 25 25 H 0.96997 * 119.99761 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.03388 * 0.02562 * 16 15 14 27 27 H 1.07995 * 119.96331 * 180.25213 * 17 16 15 28 28 H 1.07998 * 119.92231 * 179.72545 * 18 17 16 29 29 H 1.08005 * 119.96146 * 179.97438 * 19 18 17 30 30 H 1.08003 * 120.03156 * 180.02562 * 20 19 18 31 31 H 1.09000 * 109.50757 * 206.77150 * 23 21 14 32 32 H 1.08994 * 109.51376 * 86.62916 * 23 21 14 33 33 H 1.09001 * 109.44655 * 25.74507 * 24 12 10 34 34 H 1.09000 * 109.43099 * 265.80706 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 3.1016 1.6964 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1017 1.6963 1.2125 7 6 2.0082 -1.2026 -0.0005 8 1 3.0882 -1.2026 -0.0010 9 8 1.3342 -2.3699 -0.0016 10 6 2.0687 -3.5010 -0.0015 11 8 3.2835 -3.4374 -0.0010 12 6 1.4039 -4.8057 -0.0021 13 7 0.1064 -4.8637 -0.0021 14 7 -0.5621 -6.0922 0.0011 15 6 -1.9028 -6.1556 -0.3967 16 6 -2.8277 -5.2627 0.1291 17 6 -4.1486 -5.3248 -0.2690 18 6 -4.5529 -6.2815 -1.1821 19 6 -3.6355 -7.1754 -1.7035 20 6 -2.3119 -7.1148 -1.3139 21 6 0.0761 -7.2151 0.3846 22 8 -0.5102 -8.2763 0.3900 23 6 1.5215 -7.1472 0.8081 24 6 2.2335 -6.0620 -0.0026 25 1 -0.4849 0.8400 0.0004 26 1 -2.5134 -4.5180 0.8453 27 1 -4.8675 -4.6282 0.1364 28 1 -5.5873 -6.3308 -1.4884 29 1 -3.9546 -7.9216 -2.4161 30 1 -1.5959 -7.8130 -1.7218 31 1 1.9995 -8.1098 0.6264 32 1 1.5790 -6.9060 1.8694 33 1 3.2060 -5.8548 0.4440 34 1 2.3706 -6.4055 -1.0279 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004563284.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:19 Heat of formation + Delta-G solvation = -52.096303 kcal Electronic energy + Delta-G solvation = -22050.920898 eV Core-core repulsion = 18528.869824 eV Total energy + Delta-G solvation = -3522.051074 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -42.31793 -41.07800 -39.70925 -38.56517 -37.35368 -35.33343 -34.41668 -32.78115 -31.96294 -30.83081 -27.97041 -26.83747 -25.35957 -23.96446 -23.39375 -22.16201 -20.09290 -19.83599 -19.20694 -18.60809 -17.47156 -17.44223 -17.26442 -16.75611 -16.63733 -16.24373 -15.87106 -15.42557 -15.06803 -14.68251 -14.48865 -14.40117 -14.08723 -13.76609 -13.58144 -13.49420 -13.10753 -12.89245 -12.50319 -12.40194 -12.18960 -12.13928 -12.09523 -11.99705 -11.40579 -10.99369 -10.74885 -10.54093 -9.96560 -9.38635 -8.60462 -6.37083 -0.35185 0.10770 0.37293 0.88941 1.17463 1.36284 1.45277 1.53137 1.94149 1.99349 2.38854 2.70178 2.96720 3.05357 3.36042 3.73522 3.84288 3.93517 3.96106 4.04962 4.20600 4.33880 4.44907 4.50806 4.55090 4.64399 4.71380 5.00790 5.03867 5.11322 5.18941 5.38812 5.43871 5.50132 5.71791 5.95086 6.33692 6.46974 6.70451 6.81746 7.61730 8.58277 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.016817 B = 0.004945 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.625816 B = 5661.161471 C = 7114.128019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C -0.001 4.001 3 Si 1.023 2.977 4 H -0.258 1.258 5 H -0.262 1.262 6 H -0.257 1.257 7 C -0.416 4.416 8 H 0.096 0.904 9 O -0.213 6.213 10 C 0.439 3.561 11 O -0.553 6.553 12 C 0.117 3.883 13 N -0.213 5.213 14 N -0.415 5.415 15 C 0.120 3.880 16 C -0.127 4.127 17 C -0.111 4.111 18 C -0.113 4.113 19 C -0.106 4.106 20 C -0.120 4.120 21 C 0.489 3.511 22 O -0.532 6.532 23 C -0.127 4.127 24 C -0.096 4.096 25 H 0.282 0.718 26 H 0.112 0.888 27 H 0.151 0.849 28 H 0.164 0.836 29 H 0.161 0.839 30 H 0.121 0.879 31 H 0.158 0.842 32 H 0.124 0.876 33 H 0.132 0.868 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.549 -12.071 -1.345 12.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.204 4.204 3 Si 0.840 3.160 4 H -0.182 1.182 5 H -0.186 1.186 6 H -0.181 1.181 7 C -0.492 4.492 8 H 0.114 0.886 9 O -0.118 6.118 10 C 0.285 3.715 11 O -0.449 6.449 12 C -0.075 4.075 13 N -0.026 5.026 14 N -0.230 5.230 15 C 0.030 3.970 16 C -0.148 4.148 17 C -0.129 4.129 18 C -0.131 4.131 19 C -0.125 4.125 20 C -0.140 4.140 21 C 0.280 3.720 22 O -0.405 6.405 23 C -0.166 4.166 24 C -0.135 4.135 25 H 0.092 0.908 26 H 0.130 0.870 27 H 0.169 0.831 28 H 0.182 0.818 29 H 0.178 0.822 30 H 0.139 0.861 31 H 0.176 0.824 32 H 0.142 0.858 33 H 0.150 0.850 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.549 -12.085 -1.310 13.362 hybrid contribution 0.994 0.445 0.193 1.106 sum -4.556 -11.640 -1.117 12.550 Atomic orbital electron populations 1.70088 1.08020 1.29954 1.44173 1.26726 0.96825 1.02661 0.94145 0.84615 0.77587 0.73626 0.80144 1.18198 1.18616 1.18135 1.21689 0.92795 0.80589 1.54157 0.88632 1.84045 1.39964 1.14030 1.73740 1.20261 0.85588 0.84863 0.80745 1.90683 1.14467 1.87448 1.52303 1.24119 0.90700 0.94819 0.97822 1.75303 1.10744 1.05808 1.10749 1.46541 1.10091 1.04162 1.62178 1.17801 0.80802 1.00042 0.98331 1.21253 0.93943 0.99092 1.00466 1.21389 0.94377 0.99315 0.97816 1.21649 1.01410 0.94016 0.96016 1.21391 0.91233 0.99827 1.00009 1.21180 0.98466 0.98532 0.95841 1.22140 0.91345 0.82412 0.76106 1.90700 1.69042 1.28257 1.52539 1.21989 0.87926 1.03466 1.03255 1.21040 1.00414 0.87626 1.04469 0.90812 0.87007 0.83120 0.81807 0.82154 0.86085 0.82426 0.85816 0.85031 0.86277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.40 13.67 21.64 0.30 -51.10 16 2 C 0.00 -0.04 5.50 84.91 0.47 0.42 16 3 Si 1.02 41.34 29.55 68.60 2.03 43.37 16 4 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 5 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 6 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 7 C -0.42 -24.32 9.65 67.97 0.66 -23.66 16 8 H 0.10 5.49 6.86 -2.91 -0.02 5.47 16 9 O -0.21 -12.45 9.52 10.55 0.10 -12.35 16 10 C 0.44 21.66 7.84 69.95 0.55 22.20 16 11 O -0.55 -27.92 15.48 19.37 0.30 -27.62 16 12 C 0.12 4.55 6.77 44.93 0.30 4.86 16 13 N -0.21 -8.84 10.88 -43.63 -0.47 -9.32 16 14 N -0.42 -15.11 3.58 -303.46 -1.08 -16.19 16 15 C 0.12 4.22 5.66 38.15 0.22 4.43 16 16 C -0.13 -4.30 9.73 22.39 0.22 -4.08 16 17 C -0.11 -2.84 10.04 22.25 0.22 -2.62 16 18 C -0.11 -2.36 10.04 22.29 0.22 -2.14 16 19 C -0.11 -2.41 10.04 22.25 0.22 -2.19 16 20 C -0.12 -3.58 8.70 22.39 0.19 -3.38 16 21 C 0.49 15.50 7.31 87.69 0.64 16.14 16 22 O -0.53 -18.50 15.66 -2.91 -0.05 -18.55 16 23 C -0.13 -2.86 6.20 29.88 0.19 -2.67 16 24 C -0.10 -2.53 5.85 29.81 0.17 -2.36 16 25 H 0.28 14.80 8.31 -92.71 -0.77 14.03 16 26 H 0.11 4.15 8.06 -2.91 -0.02 4.12 16 27 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 28 H 0.16 2.13 8.06 -2.91 -0.02 2.10 16 29 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 30 H 0.12 3.57 7.39 -2.91 -0.02 3.55 16 31 H 0.16 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.13 3.18 7.54 -2.39 -0.02 3.16 16 34 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -75.43 309.73 6.53 -68.90 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 1.14 Total: 17.90 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 4.28 Total: 4.96 kcal Atomic # 7 Polarization: -75.35 SS G_CDS: -1.26 Total: -76.61 kcal Atomic # 8 Polarization: -58.87 SS G_CDS: 0.35 Total: -58.52 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -75.43 6.53 -68.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004563284.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.804 kcal (2) G-P(sol) polarization free energy of solvation -75.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds