Wall clock time and date at job start Tue Mar 31 2020 03:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52421 * 1 3 3 C 1.53868 * 114.38522 * 2 1 4 4 C 1.52701 * 119.15589 * 215.35987 * 2 1 3 5 5 H 1.10234 * 115.79062 * 145.01485 * 4 2 1 6 6 C 1.51504 * 120.17603 * 1.21572 * 4 2 1 7 7 C 1.51918 * 114.01331 * 297.79775 * 6 4 2 8 8 C 1.51790 * 112.48558 * 320.21288 * 7 6 4 9 9 H 1.10075 * 108.36628 * 180.73824 * 8 7 6 10 10 C 1.53030 * 110.67092 * 298.45443 * 8 7 6 11 11 C 1.53162 * 108.05475 * 188.80593 * 10 8 7 12 12 H 1.09062 * 109.31054 * 58.08293 * 11 10 8 13 13 C 1.53019 * 109.39935 * 177.81960 * 11 10 8 14 14 C 1.50693 * 109.47613 * 184.99999 * 13 11 10 15 15 H 1.08004 * 119.99641 * 359.97438 * 14 13 11 16 16 C 1.37872 * 120.00556 * 179.97438 * 14 13 11 17 17 N 1.31510 * 120.00206 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99920 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47393 * 89.99289 * 18 16 14 20 20 H 1.48499 * 109.47387 * 209.99910 * 18 16 14 21 21 H 1.48504 * 109.46883 * 329.99870 * 18 16 14 22 22 C 1.52370 * 109.80382 * 298.02517 * 11 10 8 23 23 C 1.51345 * 112.56452 * 53.65463 * 22 11 10 24 24 C 1.51107 * 114.80416 * 313.31860 * 23 22 11 25 25 H 1.09064 * 104.75165 * 161.07931 * 24 23 22 26 26 C 1.50829 * 114.42164 * 278.10934 * 24 23 22 27 27 C 1.47904 * 115.82643 * 3.56902 * 26 24 23 28 28 N 3.52624 * 148.62958 * 99.07414 * 2 1 3 29 29 H 1.09000 * 109.47101 * 267.03490 * 1 2 3 30 30 H 1.09005 * 109.46905 * 27.03452 * 1 2 3 31 31 H 1.09000 * 109.46980 * 147.03248 * 1 2 3 32 32 H 1.09004 * 109.46887 * 206.55554 * 3 2 1 33 33 H 1.08999 * 109.47150 * 326.56063 * 3 2 1 34 34 H 1.08999 * 109.46728 * 86.56354 * 3 2 1 35 35 H 1.09960 * 109.19999 * 60.14285 * 6 4 2 36 36 H 1.10092 * 108.89105 * 175.98337 * 6 4 2 37 37 H 1.10607 * 108.26698 * 200.52044 * 7 6 4 38 38 H 1.09169 * 110.97417 * 84.49848 * 7 6 4 39 39 H 1.08928 * 109.67529 * 308.19499 * 10 8 7 40 40 H 1.08807 * 109.95333 * 69.12978 * 10 8 7 41 41 H 1.08999 * 109.46551 * 304.99716 * 13 11 10 42 42 H 1.08999 * 109.47000 * 64.99525 * 13 11 10 43 43 H 0.97004 * 119.99898 * 180.02562 * 17 16 14 44 44 H 1.09523 * 108.41295 * 173.73771 * 22 11 10 45 45 H 1.08810 * 109.05960 * 291.12337 * 22 11 10 46 46 H 1.10354 * 106.94821 * 71.51791 * 23 22 11 47 47 H 1.08160 * 110.45234 * 186.66233 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5242 0.0000 0.0000 3 6 2.1595 1.4014 0.0000 4 6 2.2682 -1.0875 -0.7717 5 1 3.2120 -0.7767 -1.2490 6 6 1.4956 -2.1341 -1.5484 7 6 0.6011 -3.0085 -0.6864 8 6 1.2532 -3.3849 0.6316 9 1 0.5560 -4.0254 1.1930 10 6 2.5305 -4.1926 0.3910 11 6 3.0158 -4.7267 1.7420 12 1 2.2304 -5.3346 2.1927 13 6 4.2641 -5.5861 1.5300 14 6 4.6715 -6.2118 2.8390 15 1 4.0978 -6.0159 3.7328 16 6 5.7764 -7.0344 2.8956 17 7 6.1322 -7.5801 4.0380 18 14 6.7691 -7.3727 1.3497 19 1 7.8423 -6.3548 1.2179 20 1 7.3772 -8.7246 1.4379 21 1 5.8769 -7.3076 0.1644 22 6 3.3502 -3.5632 2.6672 23 6 2.2049 -2.5835 2.8055 24 6 1.5550 -2.1800 1.5024 25 1 0.5826 -1.7782 1.7898 26 6 2.2824 -1.0914 0.7536 27 6 3.5564 -0.6379 1.3526 28 7 4.5350 -0.2895 1.8127 29 1 -0.3633 -0.0532 1.0263 30 1 -0.3633 0.9154 -0.4671 31 1 -0.3633 -0.8622 -0.5592 32 1 3.1468 1.3528 -0.4595 33 1 1.5285 2.0864 -0.5663 34 1 2.2534 1.7577 1.0258 35 1 0.8833 -1.6370 -2.3146 36 1 2.2089 -2.7762 -2.0879 37 1 0.3828 -3.9380 -1.2448 38 1 -0.3633 -2.5279 -0.5110 39 1 2.3168 -5.0270 -0.2758 40 1 3.2958 -3.5553 -0.0472 41 1 4.0465 -6.3700 0.8047 42 1 5.0761 -4.9616 1.1575 43 1 6.9099 -8.1586 4.0778 44 1 3.5857 -3.9658 3.6581 45 1 4.2354 -3.0537 2.2918 46 1 1.4263 -3.0819 3.4081 47 1 2.5158 -1.7162 3.3720 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005757380.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:01 Heat of formation + Delta-G solvation = -2.510682 kcal Electronic energy + Delta-G solvation = -24209.538657 eV Core-core repulsion = 21162.562971 eV Total energy + Delta-G solvation = -3046.975686 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 287.194 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.19137 -38.76026 -37.19006 -35.44734 -34.37709 -33.38952 -30.82328 -30.21401 -29.34649 -28.07776 -25.21895 -24.83709 -23.65568 -22.55177 -20.99153 -20.28649 -19.07257 -18.73497 -17.11198 -16.44647 -16.30112 -16.16577 -15.84648 -15.48318 -15.03708 -14.85534 -14.47950 -14.38149 -14.20679 -14.14468 -13.72672 -13.64637 -13.43921 -13.30369 -13.28235 -13.00526 -12.91039 -12.77951 -12.50154 -12.33102 -12.10666 -12.09542 -11.85528 -11.78732 -11.71639 -11.42584 -11.29418 -10.98091 -10.94741 -10.78162 -10.60833 -10.28004 -10.14576 -8.30520 -6.32192 1.30152 1.30857 1.43208 1.59228 1.80880 2.32867 2.75864 2.87799 3.04771 3.35800 3.61658 3.72100 3.97359 4.00444 4.05722 4.14501 4.22097 4.32754 4.37951 4.50339 4.56011 4.63642 4.72087 4.75253 4.77842 4.79870 4.89116 4.94131 5.04244 5.08803 5.10079 5.15324 5.19893 5.21671 5.23743 5.26860 5.32115 5.33776 5.39670 5.42715 5.48293 5.50010 5.57341 5.65148 5.73465 5.78376 5.81005 6.30934 6.61773 6.75237 7.31445 8.86448 Molecular weight = 287.19amu Principal moments of inertia in cm(-1) A = 0.022616 B = 0.004784 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.762809 B = 5851.009391 C = 6120.579242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.067 4.067 3 C -0.127 4.127 4 C -0.102 4.102 5 H 0.095 0.905 6 C -0.084 4.084 7 C -0.110 4.110 8 C -0.071 4.071 9 H 0.080 0.920 10 C -0.101 4.101 11 C -0.066 4.066 12 H 0.056 0.944 13 C -0.007 4.007 14 C -0.518 4.518 15 H 0.033 0.967 16 C 0.001 3.999 17 N -0.954 5.954 18 Si 0.944 3.056 19 H -0.278 1.278 20 H -0.280 1.280 21 H -0.242 1.242 22 C -0.093 4.093 23 C -0.107 4.107 24 C -0.025 4.025 25 H 0.101 0.899 26 C -0.042 4.042 27 C 0.261 3.739 28 N -0.498 5.498 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.042 0.958 33 H 0.094 0.906 34 H 0.048 0.952 35 H 0.100 0.900 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.069 0.931 40 H 0.050 0.950 41 H 0.022 0.978 42 H -0.001 1.001 43 H 0.264 0.736 44 H 0.026 0.974 45 H 0.022 0.978 46 H 0.070 0.930 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.663 16.275 -15.721 29.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.069 4.069 3 C -0.184 4.184 4 C -0.122 4.122 5 H 0.113 0.887 6 C -0.121 4.121 7 C -0.147 4.147 8 C -0.090 4.090 9 H 0.098 0.902 10 C -0.139 4.139 11 C -0.084 4.084 12 H 0.075 0.925 13 C -0.045 4.045 14 C -0.556 4.556 15 H 0.051 0.949 16 C -0.195 4.195 17 N -0.595 5.595 18 Si 0.768 3.232 19 H -0.203 1.203 20 H -0.206 1.206 21 H -0.165 1.165 22 C -0.130 4.130 23 C -0.145 4.145 24 C -0.044 4.044 25 H 0.119 0.881 26 C -0.046 4.046 27 C -0.055 4.055 28 N -0.174 5.174 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.062 0.938 33 H 0.113 0.887 34 H 0.067 0.933 35 H 0.118 0.882 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.113 0.887 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.040 0.960 42 H 0.018 0.982 43 H 0.073 0.927 44 H 0.045 0.955 45 H 0.041 0.959 46 H 0.088 0.912 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -17.061 16.683 -14.926 28.146 hybrid contribution 1.592 -0.753 0.557 1.847 sum -15.469 15.930 -14.369 26.448 Atomic orbital electron populations 1.21513 0.88505 1.04615 1.03468 1.21930 0.96788 0.89772 0.98397 1.21746 1.00292 0.94481 1.01837 1.22540 1.01179 0.99665 0.88812 0.88727 1.20693 0.98678 0.95420 0.97323 1.21343 0.98614 1.00754 0.93964 1.20718 0.96419 0.94857 0.96957 0.90186 1.21615 0.97678 0.99167 0.95433 1.20840 0.96707 0.94811 0.96070 0.92505 1.19611 0.94879 0.95018 0.94948 1.21506 1.11324 1.27292 0.95518 0.94861 1.25994 0.98655 0.95537 0.99314 1.70072 1.27760 1.34103 1.27587 0.85743 0.79112 0.77450 0.80891 1.20341 1.20593 1.16550 1.20856 0.97259 0.96058 0.98866 1.20830 0.97894 0.98131 0.97604 1.19237 0.98966 0.93210 0.92956 0.88094 1.18633 0.88399 1.02246 0.95307 1.28906 0.93640 0.91108 0.91849 1.81232 1.13274 1.12135 1.10782 0.91196 0.89871 0.89303 0.93850 0.88707 0.93251 0.88169 0.91810 0.90645 0.88732 0.91282 0.93167 0.95965 0.98231 0.92711 0.95546 0.95915 0.91162 0.93340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 8.82 71.79 0.63 -0.36 16 2 C -0.07 -0.95 2.67 -52.26 -0.14 -1.09 16 3 C -0.13 -1.89 8.61 72.27 0.62 -1.27 16 4 C -0.10 -1.69 4.72 -11.54 -0.05 -1.74 16 5 H 0.09 1.75 7.92 -1.73 -0.01 1.74 16 6 C -0.08 -1.01 4.43 29.75 0.13 -0.88 16 7 C -0.11 -1.32 4.73 29.84 0.14 -1.18 16 8 C -0.07 -1.41 1.97 -11.61 -0.02 -1.43 16 9 H 0.08 1.53 8.11 -1.81 -0.01 1.52 16 10 C -0.10 -2.89 4.18 30.66 0.13 -2.76 16 11 C -0.07 -2.57 2.14 -10.94 -0.02 -2.60 16 12 H 0.06 2.25 8.09 -2.35 -0.02 2.24 16 13 C -0.01 -0.35 3.51 29.85 0.10 -0.25 16 14 C -0.52 -31.12 9.02 25.60 0.23 -30.89 16 15 H 0.03 2.19 7.23 -2.91 -0.02 2.17 16 16 C 0.00 0.06 5.47 84.65 0.46 0.52 16 17 N -0.95 -62.40 13.96 21.44 0.30 -62.10 16 18 Si 0.94 46.75 27.47 68.60 1.88 48.63 16 19 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 20 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 21 H -0.24 -10.99 6.54 99.48 0.65 -10.34 16 22 C -0.09 -3.72 4.76 29.84 0.14 -3.58 16 23 C -0.11 -3.17 4.48 29.44 0.13 -3.03 16 24 C -0.02 -0.53 1.72 -12.54 -0.02 -0.55 16 25 H 0.10 1.57 6.64 -2.35 -0.02 1.56 16 26 C -0.04 -0.90 2.10 -54.72 -0.12 -1.02 16 27 C 0.26 7.97 10.67 89.65 0.96 8.93 16 28 N -0.50 -18.57 18.54 20.19 0.37 -18.19 16 29 H 0.07 0.56 7.42 -2.39 -0.02 0.54 16 30 H 0.08 0.43 7.73 -2.38 -0.02 0.41 16 31 H 0.09 0.50 4.32 -2.39 -0.01 0.49 16 32 H 0.04 0.77 7.62 -2.39 -0.02 0.75 16 33 H 0.09 0.91 7.78 -2.39 -0.02 0.89 16 34 H 0.05 0.86 8.04 -2.39 -0.02 0.84 16 35 H 0.10 0.70 8.15 -1.87 -0.02 0.68 16 36 H 0.06 0.88 8.23 -1.80 -0.01 0.87 16 37 H 0.07 0.83 8.28 -1.52 -0.01 0.82 16 38 H 0.09 0.68 6.08 -2.30 -0.01 0.66 16 39 H 0.07 1.83 8.14 -2.43 -0.02 1.81 16 40 H 0.05 1.52 7.13 -2.49 -0.02 1.50 16 41 H 0.02 1.05 7.20 -2.39 -0.02 1.03 16 42 H 0.00 -0.03 7.55 -2.39 -0.02 -0.05 16 43 H 0.26 16.15 8.31 -92.71 -0.77 15.38 16 44 H 0.03 1.24 7.06 -2.11 -0.01 1.22 16 45 H 0.02 1.00 7.29 -2.49 -0.02 0.98 16 46 H 0.07 1.89 8.23 -1.66 -0.01 1.88 16 47 H 0.05 1.49 7.33 -2.83 -0.02 1.47 16 Total: -1.00 -76.19 344.58 6.78 -69.41 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: 0.91 Total: 5.42 kcal Atomic # 6 Polarization: -46.48 SS G_CDS: 3.31 Total: -43.17 kcal Atomic # 7 Polarization: -80.96 SS G_CDS: 0.67 Total: -80.29 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 1.88 Total: 48.63 kcal Total: -76.19 6.78 -69.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005757380.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.901 kcal (2) G-P(sol) polarization free energy of solvation -76.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds