Wall clock time and date at job start Tue Mar 31 2020 03:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38429 * 119.85169 * 2 1 4 4 C 1.37907 * 120.14956 * 180.02562 * 3 2 1 5 5 C 1.39676 * 119.85072 * 359.97438 * 4 3 2 6 6 C 1.47950 * 120.14861 * 179.97438 * 5 4 3 7 7 C 1.37318 * 122.59102 * 179.97438 * 6 5 4 8 8 S 1.71022 * 108.93224 * 180.02562 * 7 6 5 9 9 C 1.75964 * 90.64467 * 359.97438 * 8 7 6 10 10 N 1.37415 * 125.19977 * 179.97438 * 9 8 7 11 11 C 1.34773 * 119.99698 * 0.02658 * 10 9 8 12 12 O 1.21960 * 120.00175 * 359.72767 * 11 10 9 13 13 C 1.40445 * 120.00063 * 179.97438 * 11 10 9 14 14 H 1.08000 * 119.99321 * 359.72754 * 13 11 10 15 15 C 1.40052 * 120.00342 * 179.72885 * 13 11 10 16 16 N 1.30691 * 119.99851 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 120.00331 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.46870 * 59.99662 * 17 15 13 19 19 H 1.48501 * 109.47364 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46997 * 300.00053 * 17 15 13 21 21 N 1.30357 * 109.60097 * 0.26508 * 9 8 7 22 22 C 1.39677 * 119.70111 * 0.25145 * 5 4 3 23 23 C 1.37912 * 119.84871 * 359.49190 * 22 5 4 24 24 H 1.09002 * 109.46996 * 89.99986 * 1 2 3 25 25 H 1.08996 * 109.47726 * 209.99910 * 1 2 3 26 26 H 1.08998 * 109.47117 * 330.00513 * 1 2 3 27 27 H 1.08000 * 119.92121 * 359.97438 * 3 2 1 28 28 H 1.08000 * 120.07451 * 179.97438 * 4 3 2 29 29 H 1.07997 * 125.53294 * 0.05854 * 7 6 5 30 30 H 0.96998 * 119.99776 * 180.02562 * 10 9 8 31 31 H 0.96999 * 120.00021 * 180.02562 * 16 15 13 32 32 H 1.07995 * 120.07471 * 179.72272 * 22 5 4 33 33 H 1.07999 * 119.92490 * 180.23207 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1960 1.2006 0.0000 4 6 3.5750 1.2078 -0.0005 5 6 4.2765 0.0000 -0.0005 6 6 5.7560 0.0000 -0.0017 7 6 6.4957 -1.1570 -0.0012 8 16 8.1575 -0.7531 -0.0021 9 6 7.7613 0.9613 -0.0039 10 7 8.6770 1.9859 -0.0048 11 6 9.9963 1.7106 -0.0048 12 8 10.3774 0.5521 0.0009 13 6 10.9322 2.7577 -0.0063 14 1 10.5946 3.7836 -0.0118 15 6 12.3032 2.4717 -0.0006 16 7 12.7116 1.2302 0.0065 17 14 13.5480 3.8644 -0.0018 18 1 13.3518 4.7046 1.2068 19 1 14.9218 3.3006 0.0055 20 1 13.3599 4.6953 -1.2181 21 7 6.4663 1.1108 0.0020 22 6 3.5750 -1.2078 -0.0053 23 6 2.1959 -1.2006 0.0006 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5137 27 1 1.6523 2.1338 -0.0004 28 1 4.1114 2.1452 -0.0010 29 1 6.0933 -2.1592 -0.0009 30 1 8.3737 2.9073 -0.0053 31 1 13.6611 1.0321 0.0108 32 1 4.1113 -2.1452 -0.0099 33 1 1.6522 -2.1338 0.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006215284.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:52 Heat of formation + Delta-G solvation = 19.451886 kcal Electronic energy + Delta-G solvation = -18835.665216 eV Core-core repulsion = 15759.469575 eV Total energy + Delta-G solvation = -3076.195641 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.62798 -38.66533 -37.61699 -33.96145 -32.87540 -32.34972 -30.92497 -29.04243 -27.18079 -26.66904 -23.89445 -22.23345 -21.68805 -20.50185 -19.58633 -17.71545 -17.01389 -15.94427 -15.81027 -15.63471 -14.95783 -14.58538 -14.47627 -14.27224 -13.79572 -13.46782 -13.28312 -12.89249 -12.81280 -12.32575 -12.24675 -11.88000 -11.60194 -11.37358 -11.23241 -10.91225 -10.86902 -10.60211 -10.40824 -9.98316 -9.16647 -9.04042 -8.83944 -8.82467 -8.19193 -8.10362 -6.94082 -6.64150 -5.19702 1.02435 1.55390 1.85008 2.02875 2.85076 2.95418 3.01926 3.03925 3.35876 3.76621 4.09259 4.11814 4.26305 4.86127 4.88665 5.02280 5.14938 5.29214 5.41671 5.48183 5.55188 5.67178 5.76093 5.80138 5.96875 6.12009 6.26246 6.37330 6.65285 6.74644 6.79210 7.00344 7.12061 7.47894 7.54498 7.73501 8.40986 8.53449 8.93868 10.01324 10.23745 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.043827 B = 0.003247 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.729235 B = 8621.698418 C = 9245.276640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.097 4.097 3 C -0.124 4.124 4 C -0.089 4.089 5 C -0.006 4.006 6 C 0.119 3.881 7 C -0.387 4.387 8 S 0.261 5.739 9 C 0.296 3.704 10 N -0.635 5.635 11 C 0.529 3.471 12 O -0.550 6.550 13 C -0.520 4.520 14 H 0.077 0.923 15 C 0.086 3.914 16 N -0.735 5.735 17 Si 0.921 3.079 18 H -0.263 1.263 19 H -0.276 1.276 20 H -0.263 1.263 21 N -0.538 5.538 22 C -0.105 4.105 23 C -0.123 4.123 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.120 0.880 28 H 0.132 0.868 29 H 0.161 0.839 30 H 0.406 0.594 31 H 0.279 0.721 32 H 0.123 0.877 33 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.786 -1.688 -0.050 14.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.098 4.098 3 C -0.142 4.142 4 C -0.108 4.108 5 C -0.008 4.008 6 C -0.017 4.017 7 C -0.530 4.530 8 S 0.514 5.486 9 C -0.072 4.072 10 N -0.283 5.283 11 C 0.340 3.660 12 O -0.436 6.436 13 C -0.555 4.555 14 H 0.095 0.905 15 C -0.139 4.139 16 N -0.361 5.361 17 Si 0.744 3.256 18 H -0.188 1.188 19 H -0.201 1.201 20 H -0.188 1.188 21 N -0.263 5.263 22 C -0.125 4.125 23 C -0.141 4.141 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.138 0.862 28 H 0.150 0.850 29 H 0.179 0.821 30 H 0.243 0.757 31 H 0.090 0.910 32 H 0.141 0.859 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.414 -2.605 -0.037 13.665 hybrid contribution -0.567 1.175 -0.010 1.305 sum -13.981 -1.430 -0.047 14.054 Atomic orbital electron populations 1.20758 0.91545 1.02458 1.02022 1.19964 0.95801 0.93295 1.00702 1.20960 0.94070 0.97321 1.01853 1.21347 0.93513 0.98220 0.97727 1.18280 0.89540 0.93318 0.99688 1.18557 0.92825 0.86781 1.03528 1.27335 1.03109 1.02733 1.19773 1.85111 0.97790 0.98468 1.67244 1.24443 0.89265 0.95009 0.98507 1.43521 1.05808 1.06554 1.72370 1.16998 0.78295 0.91183 0.79484 1.90632 1.75182 1.21386 1.56355 1.19667 0.90663 0.93696 1.51461 0.90460 1.25799 0.99237 0.96572 0.92329 1.69997 1.16835 1.19296 1.29988 0.86191 0.78638 0.80806 0.79968 1.18793 1.20100 1.18786 1.66663 1.02240 1.30393 1.27003 1.21171 0.93896 0.97299 1.00086 1.20846 0.93788 0.97328 1.02108 0.91448 0.91800 0.91765 0.86232 0.85048 0.82113 0.75743 0.91017 0.85887 0.86215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.01 36.00 0.36 -0.57 16 2 C -0.10 -1.13 5.89 -104.49 -0.62 -1.74 16 3 C -0.12 -1.57 9.68 -39.63 -0.38 -1.96 16 4 C -0.09 -1.36 9.64 -39.17 -0.38 -1.74 16 5 C -0.01 -0.10 5.88 -104.84 -0.62 -0.71 16 6 C 0.12 2.28 6.67 -84.21 -0.56 1.72 16 7 C -0.39 -7.07 10.43 30.40 0.32 -6.76 16 8 S 0.26 5.48 20.22 -107.50 -2.17 3.31 16 9 C 0.30 6.59 8.32 -88.28 -0.73 5.85 16 10 N -0.63 -14.34 5.33 -15.00 -0.08 -14.42 16 11 C 0.53 13.85 7.48 -15.43 -0.12 13.73 16 12 O -0.55 -15.81 12.29 4.95 0.06 -15.75 16 13 C -0.52 -13.22 9.24 -38.07 -0.35 -13.57 16 14 H 0.08 1.76 7.85 -52.49 -0.41 1.35 16 15 C 0.09 2.14 5.49 -17.36 -0.10 2.05 16 16 N -0.73 -19.70 11.70 55.55 0.65 -19.05 16 17 Si 0.92 18.09 29.56 -169.99 -5.02 13.06 16 18 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 19 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 20 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 21 N -0.54 -11.27 9.99 -10.29 -0.10 -11.37 16 22 C -0.11 -1.47 9.49 -39.16 -0.37 -1.84 16 23 C -0.12 -1.47 9.68 -39.63 -0.38 -1.85 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 26 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 27 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 28 H 0.13 2.07 7.68 -52.49 -0.40 1.67 16 29 H 0.16 2.44 6.86 -52.49 -0.36 2.08 16 30 H 0.41 8.05 8.77 -40.82 -0.36 7.69 16 31 H 0.28 6.73 8.29 -40.82 -0.34 6.39 16 32 H 0.12 1.53 6.62 -52.49 -0.35 1.18 16 33 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 304.80 15.07 4.59 4.59 Total: -1.00 -30.04 304.80 -9.13 -39.17 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -3.12 Total: 7.83 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -3.93 Total: -7.38 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: 0.47 Total: -44.84 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: 0.06 Total: -15.75 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.02 Total: 13.06 kcal Atomic # 16 Polarization: 5.48 SS G_CDS: -2.17 Total: 3.31 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.04 -9.13 -39.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006215284.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.623 kcal (2) G-P(sol) polarization free energy of solvation -30.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds