Wall clock time and date at job start Tue Mar 31 2020 03:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38429 * 119.85169 * 2 1 4 4 C 1.37907 * 120.14956 * 180.02562 * 3 2 1 5 5 C 1.39676 * 119.85072 * 359.97438 * 4 3 2 6 6 C 1.47950 * 120.14861 * 179.97438 * 5 4 3 7 7 C 1.37318 * 122.59102 * 179.97438 * 6 5 4 8 8 S 1.71022 * 108.93224 * 180.02562 * 7 6 5 9 9 C 1.75964 * 90.64467 * 359.97438 * 8 7 6 10 10 N 1.37415 * 125.19977 * 179.97438 * 9 8 7 11 11 C 1.34773 * 119.99698 * 0.02658 * 10 9 8 12 12 O 1.21960 * 120.00175 * 359.72767 * 11 10 9 13 13 C 1.40445 * 120.00063 * 179.97438 * 11 10 9 14 14 H 1.08000 * 119.99321 * 359.72754 * 13 11 10 15 15 C 1.40052 * 120.00342 * 179.72885 * 13 11 10 16 16 N 1.30691 * 119.99851 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 120.00331 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.46870 * 59.99662 * 17 15 13 19 19 H 1.48501 * 109.47364 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46997 * 300.00053 * 17 15 13 21 21 N 1.30357 * 109.60097 * 0.26508 * 9 8 7 22 22 C 1.39677 * 119.70111 * 0.25145 * 5 4 3 23 23 C 1.37912 * 119.84871 * 359.49190 * 22 5 4 24 24 H 1.09002 * 109.46996 * 89.99986 * 1 2 3 25 25 H 1.08996 * 109.47726 * 209.99910 * 1 2 3 26 26 H 1.08998 * 109.47117 * 330.00513 * 1 2 3 27 27 H 1.08000 * 119.92121 * 359.97438 * 3 2 1 28 28 H 1.08000 * 120.07451 * 179.97438 * 4 3 2 29 29 H 1.07997 * 125.53294 * 0.05854 * 7 6 5 30 30 H 0.96998 * 119.99776 * 180.02562 * 10 9 8 31 31 H 0.96999 * 120.00021 * 180.02562 * 16 15 13 32 32 H 1.07995 * 120.07471 * 179.72272 * 22 5 4 33 33 H 1.07999 * 119.92490 * 180.23207 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1960 1.2006 0.0000 4 6 3.5750 1.2078 -0.0005 5 6 4.2765 0.0000 -0.0005 6 6 5.7560 0.0000 -0.0017 7 6 6.4957 -1.1570 -0.0012 8 16 8.1575 -0.7531 -0.0021 9 6 7.7613 0.9613 -0.0039 10 7 8.6770 1.9859 -0.0048 11 6 9.9963 1.7106 -0.0048 12 8 10.3774 0.5521 0.0009 13 6 10.9322 2.7577 -0.0063 14 1 10.5946 3.7836 -0.0118 15 6 12.3032 2.4717 -0.0006 16 7 12.7116 1.2302 0.0065 17 14 13.5480 3.8644 -0.0018 18 1 13.3518 4.7046 1.2068 19 1 14.9218 3.3006 0.0055 20 1 13.3599 4.6953 -1.2181 21 7 6.4663 1.1108 0.0020 22 6 3.5750 -1.2078 -0.0053 23 6 2.1959 -1.2006 0.0006 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5137 27 1 1.6523 2.1338 -0.0004 28 1 4.1114 2.1452 -0.0010 29 1 6.0933 -2.1592 -0.0009 30 1 8.3737 2.9073 -0.0053 31 1 13.6611 1.0321 0.0108 32 1 4.1113 -2.1452 -0.0099 33 1 1.6522 -2.1338 0.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006215284.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:52 Heat of formation + Delta-G solvation = 1.870369 kcal Electronic energy + Delta-G solvation = -18836.427608 eV Core-core repulsion = 15759.469575 eV Total energy + Delta-G solvation = -3076.958033 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -41.03988 -40.20591 -39.17408 -35.68509 -34.66525 -33.63674 -31.97201 -30.50030 -28.97492 -27.79361 -25.38700 -23.31035 -23.07996 -22.15771 -21.06914 -19.32491 -18.76486 -17.59976 -17.44018 -17.01113 -16.18347 -16.11967 -15.90132 -15.66242 -14.88672 -14.76104 -14.44245 -14.36277 -14.29731 -13.78449 -13.35375 -13.00066 -12.96788 -12.85414 -12.75068 -12.49567 -12.10724 -11.93229 -11.77841 -11.62663 -11.00452 -10.69017 -10.31964 -10.08185 -9.85223 -9.60974 -8.51710 -8.49661 -7.17026 -0.29148 0.37904 0.41983 0.52596 1.28224 1.40637 1.41168 1.56180 1.92716 2.12326 2.33979 2.43016 3.01231 3.47111 3.59941 3.93475 4.06761 4.14363 4.29020 4.43360 4.55745 4.62292 4.86923 4.90412 4.92947 5.05447 5.13080 5.20706 5.32062 5.53358 5.59451 5.69996 5.73081 5.77934 5.88370 6.11035 6.59549 6.73854 7.15548 8.08175 8.38856 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.043827 B = 0.003247 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.729235 B = 8621.698418 C = 9245.276640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.089 4.089 3 C -0.128 4.128 4 C -0.105 4.105 5 C -0.043 4.043 6 C 0.106 3.894 7 C -0.368 4.368 8 S 0.228 5.772 9 C 0.270 3.730 10 N -0.633 5.633 11 C 0.516 3.484 12 O -0.587 6.587 13 C -0.544 4.544 14 H 0.097 0.903 15 C 0.035 3.965 16 N -0.783 5.783 17 Si 1.004 2.996 18 H -0.253 1.253 19 H -0.270 1.270 20 H -0.253 1.253 21 N -0.538 5.538 22 C -0.107 4.107 23 C -0.122 4.122 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.142 0.858 28 H 0.115 0.885 29 H 0.195 0.805 30 H 0.416 0.584 31 H 0.286 0.714 32 H 0.136 0.864 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.081 -1.417 -0.052 17.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.089 4.089 3 C -0.146 4.146 4 C -0.124 4.124 5 C -0.045 4.045 6 C -0.029 4.029 7 C -0.510 4.510 8 S 0.480 5.520 9 C -0.098 4.098 10 N -0.281 5.281 11 C 0.328 3.672 12 O -0.474 6.474 13 C -0.578 4.578 14 H 0.115 0.885 15 C -0.185 4.185 16 N -0.411 5.411 17 Si 0.823 3.177 18 H -0.177 1.177 19 H -0.194 1.194 20 H -0.177 1.177 21 N -0.262 5.262 22 C -0.126 4.126 23 C -0.140 4.140 24 H 0.099 0.901 25 H 0.098 0.902 26 H 0.093 0.907 27 H 0.160 0.840 28 H 0.133 0.867 29 H 0.212 0.788 30 H 0.254 0.746 31 H 0.096 0.904 32 H 0.154 0.846 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -15.779 -2.327 -0.039 15.950 hybrid contribution -0.136 1.014 -0.011 1.023 sum -15.915 -1.312 -0.050 15.969 Atomic orbital electron populations 1.20844 0.88719 1.03880 1.03253 1.20450 0.97842 0.92638 0.97986 1.21227 0.92987 0.99086 1.01253 1.21355 0.94879 0.97318 0.98895 1.18368 0.88011 0.95009 1.03111 1.19106 0.94451 0.86366 1.02941 1.27509 1.00942 1.04069 1.18521 1.85124 1.00312 0.98735 1.67826 1.24615 0.89688 0.95172 1.00339 1.43136 1.05108 1.07199 1.72692 1.17331 0.79435 0.91085 0.79387 1.90603 1.76470 1.22563 1.57800 1.20193 0.91450 0.94523 1.51635 0.88466 1.26999 1.01204 0.99405 0.90932 1.70122 1.17796 1.22065 1.31074 0.84944 0.75417 0.76854 0.80509 1.17718 1.19440 1.17700 1.66691 1.01738 1.31566 1.26242 1.21388 0.94998 0.96724 0.99469 1.21248 0.93044 0.98941 1.00735 0.90123 0.90171 0.90691 0.84021 0.86678 0.78841 0.74643 0.90386 0.84598 0.82980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 10.01 71.23 0.71 -0.64 16 2 C -0.09 -1.76 5.89 -19.78 -0.12 -1.87 16 3 C -0.13 -2.98 9.68 22.24 0.22 -2.76 16 4 C -0.11 -3.20 9.64 22.54 0.22 -2.98 16 5 C -0.04 -1.39 5.88 -20.01 -0.12 -1.50 16 6 C 0.11 4.10 6.67 41.50 0.28 4.38 16 7 C -0.37 -13.43 10.43 67.60 0.70 -12.73 16 8 S 0.23 9.93 20.22 -56.49 -1.14 8.79 16 9 C 0.27 12.48 8.32 179.53 1.49 13.97 16 10 N -0.63 -29.82 5.33 -319.47 -1.70 -31.52 16 11 C 0.52 28.11 7.48 84.78 0.63 28.75 16 12 O -0.59 -35.33 12.29 -5.19 -0.06 -35.39 16 13 C -0.54 -28.18 9.24 23.25 0.21 -27.97 16 14 H 0.10 4.45 7.85 -2.91 -0.02 4.43 16 15 C 0.04 1.78 5.49 85.30 0.47 2.25 16 16 N -0.78 -43.21 11.70 21.84 0.26 -42.96 16 17 Si 1.00 36.82 29.56 68.60 2.03 38.85 16 18 H -0.25 -8.81 7.11 99.48 0.71 -8.10 16 19 H -0.27 -9.51 7.11 99.48 0.71 -8.81 16 20 H -0.25 -8.80 7.11 99.48 0.71 -8.09 16 21 N -0.54 -23.18 9.99 -186.48 -1.86 -25.04 16 22 C -0.11 -2.75 9.49 22.54 0.21 -2.53 16 23 C -0.12 -2.49 9.68 22.24 0.22 -2.27 16 24 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.08 0.76 8.08 -2.39 -0.02 0.75 16 26 H 0.07 0.79 8.08 -2.39 -0.02 0.77 16 27 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 28 H 0.12 3.75 7.68 -2.91 -0.02 3.73 16 29 H 0.19 5.57 6.86 -2.91 -0.02 5.55 16 30 H 0.42 17.17 8.77 -92.71 -0.81 16.36 16 31 H 0.29 14.14 8.29 -92.71 -0.77 13.37 16 32 H 0.14 3.02 6.62 -2.91 -0.02 3.00 16 33 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -67.75 304.80 2.99 -64.76 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: 0.35 Total: 28.42 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: 5.13 Total: -5.90 kcal Atomic # 7 Polarization: -96.21 SS G_CDS: -3.31 Total: -99.52 kcal Atomic # 8 Polarization: -35.33 SS G_CDS: -0.06 Total: -35.39 kcal Atomic # 14 Polarization: 36.82 SS G_CDS: 2.03 Total: 38.85 kcal Atomic # 16 Polarization: 9.93 SS G_CDS: -1.14 Total: 8.79 kcal Total: -67.75 2.99 -64.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006215284.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.628 kcal (2) G-P(sol) polarization free energy of solvation -67.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds