Wall clock time and date at job start Tue Mar 31 2020 04:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21455 * 119.99979 * 2 1 4 4 C 1.40978 * 120.00126 * 180.02562 * 2 1 3 5 5 C 1.36291 * 126.76095 * 185.55387 * 4 2 1 6 6 O 1.35246 * 125.42699 * 0.04342 * 5 4 2 7 7 C 1.47295 * 109.13417 * 179.97438 * 5 4 2 8 8 O 1.21636 * 124.95057 * 180.02562 * 7 5 4 9 9 N 1.34504 * 110.09843 * 0.04029 * 7 5 4 10 10 C 1.35998 * 125.98684 * 180.02562 * 9 7 5 11 11 H 1.07995 * 120.00182 * 340.71369 * 10 9 7 12 12 C 1.39696 * 119.99628 * 160.70939 * 10 9 7 13 13 N 1.30947 * 120.00446 * 353.42271 * 12 10 9 14 14 Si 1.86804 * 119.99742 * 173.42380 * 12 10 9 15 15 H 1.48507 * 109.47103 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47501 * 120.00046 * 14 12 10 17 17 H 1.48500 * 109.46819 * 240.00301 * 14 12 10 18 18 C 1.46757 * 108.02254 * 359.97438 * 9 7 5 19 19 H 1.08998 * 110.11752 * 240.76671 * 18 9 7 20 20 C 1.50705 * 110.11903 * 119.17220 * 18 9 7 21 21 C 1.38670 * 120.42377 * 132.33939 * 20 18 9 22 22 C 1.38622 * 118.42563 * 179.78358 * 21 20 18 23 23 C 1.38226 * 119.15665 * 0.46499 * 22 21 20 24 24 N 1.31858 * 120.76615 * 359.77580 * 23 22 21 25 25 C 1.31884 * 121.72484 * 359.97438 * 24 23 22 26 26 H 1.09001 * 109.46565 * 185.81056 * 1 2 3 27 27 H 1.08999 * 109.46445 * 305.80643 * 1 2 3 28 28 H 1.08992 * 109.46850 * 65.80859 * 1 2 3 29 29 H 0.96701 * 114.00379 * 179.97438 * 6 5 4 30 30 H 0.96997 * 120.00148 * 179.97438 * 13 12 10 31 31 H 1.08001 * 120.78439 * 0.02562 * 21 20 18 32 32 H 1.08001 * 120.42333 * 180.21987 * 22 21 20 33 33 H 1.08001 * 119.61896 * 179.74871 * 23 22 21 34 34 H 1.07995 * 119.61609 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1143 1.0518 0.0000 4 6 2.2120 -1.2209 -0.0005 5 6 3.5610 -1.3839 0.1051 6 8 4.4639 -0.3849 0.2310 7 6 3.8784 -2.8216 0.0619 8 8 4.9985 -3.2904 0.1338 9 7 2.7491 -3.5405 -0.0690 10 6 2.6688 -4.8962 -0.1415 11 1 3.5411 -5.4755 -0.4057 12 6 1.4578 -5.5393 0.1260 13 7 0.4357 -4.8522 0.5706 14 14 1.2967 -7.3797 -0.1507 15 1 2.5856 -7.9193 -0.6539 16 1 0.9477 -8.0443 1.1305 17 1 0.2287 -7.6384 -1.1496 18 6 1.6189 -2.6057 -0.1187 19 1 0.9390 -2.7951 0.7119 20 6 0.8876 -2.7457 -1.4290 21 6 -0.4948 -2.8520 -1.4537 22 6 -1.1253 -2.9744 -2.6821 23 6 -0.3598 -2.9962 -3.8328 24 7 0.9537 -2.8977 -3.7711 25 6 1.5866 -2.7750 -2.6206 26 1 -0.3632 -1.0224 0.1040 27 1 -0.3632 0.6012 0.8335 28 1 -0.3633 0.4211 -0.9374 29 1 5.3800 -0.6882 0.2935 30 1 -0.4052 -5.2987 0.7559 31 1 -1.0669 -2.8357 -0.5378 32 1 -2.2007 -3.0558 -2.7392 33 1 -0.8430 -3.0954 -4.7936 34 1 2.6637 -2.6974 -2.6096 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006855345.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:26:58 Heat of formation + Delta-G solvation = -38.548497 kcal Electronic energy + Delta-G solvation = -23541.807349 eV Core-core repulsion = 20020.343752 eV Total energy + Delta-G solvation = -3521.463597 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 3.86 seconds Orbital eigenvalues (eV) -40.88893 -39.23967 -38.30635 -37.12064 -35.60882 -33.49014 -32.23772 -31.06501 -30.54269 -29.39563 -25.85461 -25.76336 -23.06727 -22.94057 -21.52982 -20.43469 -18.43880 -17.86978 -17.24264 -16.60595 -16.01091 -15.72355 -15.10877 -14.98344 -14.65939 -14.34454 -14.11524 -14.07558 -13.70159 -13.30087 -13.10234 -12.77076 -12.58679 -12.46762 -12.18849 -11.87216 -11.69878 -11.58358 -11.43702 -11.16267 -10.85932 -10.64065 -9.87515 -9.40916 -9.22627 -9.03354 -8.78108 -8.50399 -8.34244 -8.05129 -6.89927 -4.34390 1.11543 1.61221 1.83317 2.87032 2.98790 3.03698 3.17964 3.64519 3.92951 4.01888 4.32343 4.45044 4.65960 4.76442 4.91341 5.11167 5.29808 5.42071 5.53806 5.56662 5.58535 5.65277 5.78310 6.02488 6.10034 6.17707 6.41217 6.57059 6.59185 6.62037 6.93417 7.00260 7.18541 7.29518 7.72082 7.96618 8.21694 8.45717 8.60497 8.67250 9.47396 10.09332 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.013496 B = 0.009256 C = 0.006787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.206219 B = 3024.340019 C = 4124.755210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.417 3.583 3 O -0.481 6.481 4 C -0.312 4.312 5 C 0.161 3.839 6 O -0.427 6.427 7 C 0.404 3.596 8 O -0.587 6.587 9 N -0.376 5.376 10 C -0.285 4.285 11 H 0.115 0.885 12 C 0.044 3.956 13 N -0.846 5.846 14 Si 0.936 3.064 15 H -0.262 1.262 16 H -0.274 1.274 17 H -0.274 1.274 18 C 0.221 3.779 19 H 0.144 0.856 20 C -0.084 4.084 21 C -0.039 4.039 22 C -0.186 4.186 23 C 0.082 3.918 24 N -0.491 5.491 25 C 0.115 3.885 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.403 0.597 30 H 0.282 0.718 31 H 0.136 0.864 32 H 0.127 0.873 33 H 0.146 0.854 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.726 2.319 -1.997 7.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.301 3.699 3 O -0.362 6.362 4 C -0.319 4.319 5 C 0.105 3.895 6 O -0.226 6.226 7 C 0.195 3.805 8 O -0.475 6.475 9 N -0.090 5.090 10 C -0.413 4.413 11 H 0.132 0.868 12 C -0.165 4.165 13 N -0.482 5.482 14 Si 0.761 3.239 15 H -0.186 1.186 16 H -0.199 1.199 17 H -0.200 1.200 18 C 0.116 3.884 19 H 0.161 0.839 20 C -0.087 4.087 21 C -0.066 4.066 22 C -0.206 4.206 23 C -0.075 4.075 24 N -0.199 5.199 25 C -0.041 4.041 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.256 0.744 30 H 0.093 0.907 31 H 0.154 0.846 32 H 0.145 0.855 33 H 0.163 0.837 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.087 2.826 -2.707 7.237 hybrid contribution -0.311 -1.288 0.772 1.534 sum -6.399 1.538 -1.935 6.859 Atomic orbital electron populations 1.22248 0.95076 1.04525 1.03690 1.19823 0.91085 0.86823 0.72189 1.90564 1.72064 1.34019 1.39553 1.21117 0.92052 0.96868 1.21853 1.21897 0.90066 0.89068 0.88511 1.84875 1.20475 1.31062 1.86148 1.18493 0.86193 0.85941 0.89853 1.90692 1.21899 1.75204 1.59749 1.43497 1.05082 1.05545 1.54845 1.19796 0.98602 0.78754 1.44126 0.86753 1.25550 0.94808 1.01595 0.94557 1.69490 1.03142 1.37630 1.37899 0.85672 0.79371 0.80305 0.78592 1.18583 1.19892 1.19958 1.19198 0.89562 0.82960 0.96723 0.83942 1.20489 0.94233 0.98779 0.95164 1.21363 0.93777 0.93600 0.97846 1.22008 1.00839 1.04029 0.93695 1.22577 0.89837 0.97043 0.98092 1.67639 1.10505 1.12545 1.29234 1.22409 1.00000 0.94449 0.87273 0.89929 0.89771 0.89747 0.74394 0.90741 0.84582 0.85530 0.83713 0.84065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.86 9.81 36.01 0.35 -2.50 16 2 C 0.42 7.89 6.99 -33.27 -0.23 7.65 16 3 O -0.48 -10.42 16.86 -8.57 -0.14 -10.57 16 4 C -0.31 -6.26 5.33 -104.09 -0.55 -6.81 16 5 C 0.16 3.38 7.38 -36.60 -0.27 3.11 16 6 O -0.43 -8.07 12.73 -33.20 -0.42 -8.49 16 7 C 0.40 9.55 7.89 -12.70 -0.10 9.45 16 8 O -0.59 -15.30 17.60 5.24 0.09 -15.21 16 9 N -0.38 -8.76 2.39 -111.18 -0.27 -9.02 16 10 C -0.29 -6.90 9.63 -15.16 -0.15 -7.05 16 11 H 0.11 2.88 7.84 -52.49 -0.41 2.47 16 12 C 0.04 0.97 5.22 -17.38 -0.09 0.88 16 13 N -0.85 -18.01 9.32 55.53 0.52 -17.49 16 14 Si 0.94 17.99 29.56 -169.99 -5.03 12.97 16 15 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 16 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 17 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 18 C 0.22 4.48 1.57 -69.89 -0.11 4.37 16 19 H 0.14 2.97 6.15 -51.93 -0.32 2.65 16 20 C -0.08 -1.59 3.43 -104.48 -0.36 -1.95 16 21 C -0.04 -0.64 7.37 -39.28 -0.29 -0.93 16 22 C -0.19 -2.69 10.11 -39.44 -0.40 -3.09 16 23 C 0.08 1.28 11.18 -17.54 -0.20 1.08 16 24 N -0.49 -9.22 10.36 -13.25 -0.14 -9.36 16 25 C 0.12 2.31 10.41 -17.55 -0.18 2.12 16 26 H 0.08 1.13 4.54 -51.93 -0.24 0.90 16 27 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.40 5.90 8.86 45.56 0.40 6.30 16 30 H 0.28 5.58 8.30 -40.82 -0.34 5.24 16 31 H 0.14 2.03 7.40 -52.49 -0.39 1.64 16 32 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 33 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 34 H 0.14 2.98 7.97 -52.49 -0.42 2.56 16 LS Contribution 299.90 15.07 4.52 4.52 Total: -1.00 -29.63 299.90 -5.64 -35.27 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -2.20 Total: 11.04 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: -2.58 Total: 6.33 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.11 Total: -35.87 kcal Atomic # 8 Polarization: -33.79 SS G_CDS: -0.47 Total: -34.26 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.97 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.63 -5.64 -35.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006855345.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.277 kcal (2) G-P(sol) polarization free energy of solvation -29.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.86 seconds