Wall clock time and date at job start Tue Mar 31 2020 03:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21278 * 120.00127 * 2 1 4 4 N 1.34771 * 120.00061 * 179.97438 * 2 1 3 5 5 C 1.38098 * 120.00300 * 180.02562 * 4 2 1 6 6 S 1.76211 * 125.99105 * 0.30299 * 5 4 2 7 7 C 1.76045 * 90.17901 * 180.02562 * 6 5 4 8 8 C 1.39621 * 125.10210 * 179.97438 * 7 6 5 9 9 H 1.08002 * 120.00271 * 179.69988 * 8 7 6 10 10 C 1.40050 * 119.99895 * 359.41400 * 8 7 6 11 11 N 1.30824 * 119.99802 * 0.28243 * 10 8 7 12 12 Si 1.86803 * 119.99913 * 180.27709 * 10 8 7 13 13 H 1.48498 * 109.46811 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46768 * 120.00068 * 12 10 8 15 15 H 1.48498 * 109.47283 * 240.00320 * 12 10 8 16 16 N 1.31479 * 109.79141 * 359.66042 * 7 6 5 17 17 C 1.30980 * 117.23118 * 0.26909 * 16 7 6 18 18 C 1.47969 * 122.60585 * 179.97438 * 17 16 7 19 19 C 1.39599 * 120.14157 * 144.75047 * 18 17 16 20 20 C 1.37947 * 119.85179 * 179.69854 * 19 18 17 21 21 C 1.38376 * 120.14474 * 0.57488 * 20 19 18 22 22 C 1.38386 * 120.29189 * 359.72307 * 21 20 19 23 23 C 1.37939 * 120.14285 * 359.97438 * 22 21 20 24 24 H 1.08995 * 109.47286 * 240.00064 * 1 2 3 25 25 H 1.08996 * 109.46975 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.46565 * 119.99895 * 1 2 3 27 27 H 0.97006 * 120.00376 * 0.02562 * 4 2 1 28 28 H 0.97005 * 119.99681 * 179.97438 * 11 10 8 29 29 H 1.08001 * 120.07176 * 359.97302 * 19 18 17 30 30 H 1.08001 * 119.92727 * 180.29255 * 20 19 18 31 31 H 1.07995 * 119.85566 * 179.69773 * 21 20 19 32 32 H 1.08000 * 119.92775 * 179.97438 * 22 21 20 33 33 H 1.08002 * 120.07523 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5619 -1.1672 0.0011 6 16 4.5975 0.2585 0.0087 7 6 6.0251 -0.7717 0.0032 8 6 7.3445 -0.3152 0.0052 9 1 8.1607 -1.0225 0.0064 10 6 7.6098 1.0600 -0.0005 11 7 6.6211 1.9168 -0.0020 12 14 9.3751 1.6707 -0.0057 13 1 10.3006 0.5094 -0.0034 14 1 9.6120 2.4895 -1.2217 15 1 9.6161 2.4986 1.2033 16 7 5.6622 -2.0354 0.0038 17 6 4.3773 -2.2900 0.0026 18 6 3.8375 -3.6677 0.0026 19 6 2.6632 -3.9604 0.6983 20 6 2.1618 -5.2455 0.6890 21 6 2.8267 -6.2459 0.0021 22 6 3.9947 -5.9637 -0.6845 23 6 4.5033 -4.6815 -0.6884 24 1 -0.3633 -0.5138 0.8899 25 1 -0.3633 1.0276 -0.0005 26 1 -0.3632 -0.5138 -0.8900 27 1 1.6960 -2.0073 0.0005 28 1 6.8049 2.8693 -0.0055 29 1 2.1459 -3.1815 1.2388 30 1 1.2508 -5.4724 1.2229 31 1 2.4327 -7.2514 0.0020 32 1 4.5091 -6.7491 -1.2183 33 1 5.4147 -4.4624 -1.2249 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008917122.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:09 Heat of formation + Delta-G solvation = 8.551749 kcal Electronic energy + Delta-G solvation = -19647.616014 eV Core-core repulsion = 16570.947708 eV Total energy + Delta-G solvation = -3076.668306 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.43962 -38.62566 -36.98810 -34.47661 -33.65381 -31.03059 -30.54126 -29.79571 -28.13952 -25.46559 -23.26765 -22.09773 -21.31453 -20.39600 -18.92133 -17.91302 -16.63720 -16.39860 -15.92669 -15.27588 -14.94635 -14.70335 -14.18153 -14.04488 -13.46389 -13.11637 -12.83128 -12.82155 -12.69955 -12.42756 -12.24618 -11.95528 -11.76186 -11.39341 -11.02297 -10.81917 -10.68446 -10.46570 -10.21382 -9.71555 -9.51721 -9.11851 -8.61136 -8.54823 -7.58128 -7.16479 -7.05398 -6.89084 -4.58765 1.52832 1.76616 2.41735 2.91103 2.95183 3.03554 3.16670 3.31924 3.68759 3.84290 3.94600 4.07747 4.41527 5.11144 5.17180 5.24488 5.29155 5.32317 5.43044 5.49756 5.56861 5.82566 5.92137 5.97371 6.32002 6.36294 6.62341 6.69096 6.83531 6.85684 7.03844 7.18650 7.36000 7.55421 7.89548 8.01805 8.34282 8.39300 8.78926 9.73598 9.84618 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.015184 B = 0.006223 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.544123 B = 4498.590587 C = 6235.894313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.477 3.523 3 O -0.521 6.521 4 N -0.608 5.608 5 C -0.183 4.183 6 S 0.210 5.790 7 C 0.168 3.832 8 C -0.369 4.369 9 H 0.102 0.898 10 C 0.052 3.948 11 N -0.782 5.782 12 Si 0.943 3.057 13 H -0.256 1.256 14 H -0.269 1.269 15 H -0.269 1.269 16 N -0.580 5.580 17 C 0.098 3.902 18 C 0.022 3.978 19 C -0.135 4.135 20 C -0.119 4.119 21 C -0.141 4.141 22 C -0.120 4.120 23 C -0.097 4.097 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.398 0.602 28 H 0.300 0.700 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.114 0.886 32 H 0.117 0.883 33 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.987 -6.432 -0.172 10.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.263 3.737 3 O -0.398 6.398 4 N -0.253 5.253 5 C -0.403 4.403 6 S 0.467 5.533 7 C -0.086 4.086 8 C -0.412 4.412 9 H 0.120 0.880 10 C -0.169 4.169 11 N -0.413 5.413 12 Si 0.766 3.234 13 H -0.179 1.179 14 H -0.194 1.194 15 H -0.194 1.194 16 N -0.301 5.301 17 C -0.043 4.043 18 C 0.019 3.981 19 C -0.155 4.155 20 C -0.137 4.137 21 C -0.160 4.160 22 C -0.138 4.138 23 C -0.116 4.116 24 H 0.101 0.899 25 H 0.109 0.891 26 H 0.102 0.898 27 H 0.235 0.765 28 H 0.113 0.887 29 H 0.135 0.865 30 H 0.135 0.865 31 H 0.132 0.868 32 H 0.135 0.865 33 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.423 -4.629 -0.166 8.750 hybrid contribution -0.042 -1.067 0.018 1.068 sum -7.465 -5.696 -0.148 9.391 Atomic orbital electron populations 1.21817 0.91814 1.05183 1.03699 1.20845 0.90511 0.83855 0.78485 1.90696 1.69457 1.30685 1.48982 1.42301 1.04001 1.08623 1.70423 1.24555 0.86971 1.02205 1.26562 1.86447 0.93325 1.01020 1.72475 1.23916 0.98262 0.89647 0.96799 1.18922 0.91235 0.91924 1.39106 0.88014 1.26182 1.01408 0.96382 0.92958 1.68601 1.33454 1.04988 1.34214 0.85652 0.79494 0.79426 0.78855 1.17934 1.19410 1.19404 1.66814 1.13143 1.18797 1.31370 1.18542 0.88766 0.89927 1.07096 1.18483 0.93112 0.91723 0.94744 1.21191 0.96998 0.96659 1.00619 1.20924 0.99850 0.92986 0.99961 1.21035 0.96525 0.98734 0.99665 1.21067 0.96409 0.96532 0.99814 1.21331 0.99663 0.91919 0.98721 0.89851 0.89060 0.89846 0.76509 0.88678 0.86458 0.86533 0.86791 0.86514 0.85517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 10.32 36.01 0.37 -1.60 16 2 C 0.48 8.94 7.90 -10.99 -0.09 8.85 16 3 O -0.52 -12.23 14.65 5.56 0.08 -12.15 16 4 N -0.61 -11.79 4.94 -10.00 -0.05 -11.84 16 5 C -0.18 -4.41 7.11 -14.53 -0.10 -4.52 16 6 S 0.21 5.60 17.48 -107.50 -1.88 3.72 16 7 C 0.17 4.64 7.10 -17.19 -0.12 4.51 16 8 C -0.37 -9.67 9.42 -38.39 -0.36 -10.03 16 9 H 0.10 2.57 7.85 -52.49 -0.41 2.16 16 10 C 0.05 1.25 5.50 -17.30 -0.10 1.15 16 11 N -0.78 -19.52 10.60 55.55 0.59 -18.93 16 12 Si 0.94 17.83 29.56 -169.99 -5.03 12.81 16 13 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 14 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 15 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 16 N -0.58 -15.61 10.39 -9.32 -0.10 -15.71 16 17 C 0.10 2.38 6.43 -84.05 -0.54 1.84 16 18 C 0.02 0.45 5.75 -104.90 -0.60 -0.16 16 19 C -0.14 -2.26 8.27 -39.18 -0.32 -2.58 16 20 C -0.12 -1.65 10.03 -39.64 -0.40 -2.04 16 21 C -0.14 -1.90 10.04 -39.48 -0.40 -2.29 16 22 C -0.12 -1.79 10.03 -39.64 -0.40 -2.19 16 23 C -0.10 -1.80 9.66 -39.19 -0.38 -2.18 16 24 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.09 1.05 8.12 -51.93 -0.42 0.63 16 26 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.40 6.37 5.79 -40.82 -0.24 6.13 16 28 H 0.30 6.71 8.30 -40.82 -0.34 6.38 16 29 H 0.12 1.85 6.27 -52.49 -0.33 1.53 16 30 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 31 H 0.11 1.20 8.06 -52.49 -0.42 0.77 16 32 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.13 2.46 8.05 -52.49 -0.42 2.04 16 LS Contribution 301.32 15.07 4.54 4.54 Total: -1.00 -31.76 301.32 -8.34 -40.10 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -3.07 Total: 8.69 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -3.44 Total: -11.24 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: 0.44 Total: -46.48 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.08 Total: -12.15 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.81 kcal Atomic # 16 Polarization: 5.60 SS G_CDS: -1.88 Total: 3.72 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.76 -8.34 -40.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008917122.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.654 kcal (2) G-P(sol) polarization free energy of solvation -31.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds