Wall clock time and date at job start Tue Mar 31 2020 03:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21278 * 120.00127 * 2 1 4 4 N 1.34771 * 120.00061 * 179.97438 * 2 1 3 5 5 C 1.38098 * 120.00300 * 180.02562 * 4 2 1 6 6 S 1.76211 * 125.99105 * 0.30299 * 5 4 2 7 7 C 1.76045 * 90.17901 * 180.02562 * 6 5 4 8 8 C 1.39621 * 125.10210 * 179.97438 * 7 6 5 9 9 H 1.08002 * 120.00271 * 179.69988 * 8 7 6 10 10 C 1.40050 * 119.99895 * 359.41400 * 8 7 6 11 11 N 1.30824 * 119.99802 * 0.28243 * 10 8 7 12 12 Si 1.86803 * 119.99913 * 180.27709 * 10 8 7 13 13 H 1.48498 * 109.46811 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46768 * 120.00068 * 12 10 8 15 15 H 1.48498 * 109.47283 * 240.00320 * 12 10 8 16 16 N 1.31479 * 109.79141 * 359.66042 * 7 6 5 17 17 C 1.30980 * 117.23118 * 0.26909 * 16 7 6 18 18 C 1.47969 * 122.60585 * 179.97438 * 17 16 7 19 19 C 1.39599 * 120.14157 * 144.75047 * 18 17 16 20 20 C 1.37947 * 119.85179 * 179.69854 * 19 18 17 21 21 C 1.38376 * 120.14474 * 0.57488 * 20 19 18 22 22 C 1.38386 * 120.29189 * 359.72307 * 21 20 19 23 23 C 1.37939 * 120.14285 * 359.97438 * 22 21 20 24 24 H 1.08995 * 109.47286 * 240.00064 * 1 2 3 25 25 H 1.08996 * 109.46975 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.46565 * 119.99895 * 1 2 3 27 27 H 0.97006 * 120.00376 * 0.02562 * 4 2 1 28 28 H 0.97005 * 119.99681 * 179.97438 * 11 10 8 29 29 H 1.08001 * 120.07176 * 359.97302 * 19 18 17 30 30 H 1.08001 * 119.92727 * 180.29255 * 20 19 18 31 31 H 1.07995 * 119.85566 * 179.69773 * 21 20 19 32 32 H 1.08000 * 119.92775 * 179.97438 * 22 21 20 33 33 H 1.08002 * 120.07523 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5619 -1.1672 0.0011 6 16 4.5975 0.2585 0.0087 7 6 6.0251 -0.7717 0.0032 8 6 7.3445 -0.3152 0.0052 9 1 8.1607 -1.0225 0.0064 10 6 7.6098 1.0600 -0.0005 11 7 6.6211 1.9168 -0.0020 12 14 9.3751 1.6707 -0.0057 13 1 10.3006 0.5094 -0.0034 14 1 9.6120 2.4895 -1.2217 15 1 9.6161 2.4986 1.2033 16 7 5.6622 -2.0354 0.0038 17 6 4.3773 -2.2900 0.0026 18 6 3.8375 -3.6677 0.0026 19 6 2.6632 -3.9604 0.6983 20 6 2.1618 -5.2455 0.6890 21 6 2.8267 -6.2459 0.0021 22 6 3.9947 -5.9637 -0.6845 23 6 4.5033 -4.6815 -0.6884 24 1 -0.3633 -0.5138 0.8899 25 1 -0.3633 1.0276 -0.0005 26 1 -0.3632 -0.5138 -0.8900 27 1 1.6960 -2.0073 0.0005 28 1 6.8049 2.8693 -0.0055 29 1 2.1459 -3.1815 1.2388 30 1 1.2508 -5.4724 1.2229 31 1 2.4327 -7.2514 0.0020 32 1 4.5091 -6.7491 -1.2183 33 1 5.4147 -4.4624 -1.2249 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008917122.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:08 Heat of formation + Delta-G solvation = -12.764505 kcal Electronic energy + Delta-G solvation = -19648.540356 eV Core-core repulsion = 16570.947708 eV Total energy + Delta-G solvation = -3077.592649 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.98491 -40.06875 -38.68086 -36.25720 -35.42058 -32.49839 -31.78032 -30.99040 -29.90336 -27.17864 -24.88508 -23.41063 -22.88518 -21.93377 -20.54918 -19.76521 -18.22265 -17.94980 -17.42710 -16.82454 -16.42565 -16.28069 -15.57695 -15.48423 -15.00456 -14.61120 -14.53402 -14.28638 -14.15609 -13.62104 -13.44332 -13.38469 -13.19287 -12.91646 -12.77467 -12.32918 -12.01397 -11.92814 -11.89255 -11.43490 -11.25196 -10.82744 -10.01170 -9.81924 -9.57133 -9.15529 -8.88397 -8.68312 -6.54024 0.09730 0.53238 0.72812 1.27551 1.37171 1.41069 1.57885 1.75625 1.92102 2.15969 2.32965 2.50010 2.94293 3.27108 3.82533 3.97635 4.08565 4.19442 4.32347 4.49997 4.58241 4.64241 4.65083 4.87682 4.96159 5.03461 5.06414 5.19670 5.28218 5.59621 5.63800 5.76313 5.83208 5.93240 6.16231 6.40251 6.45755 6.55372 7.30397 7.81083 8.02728 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.015184 B = 0.006223 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.544123 B = 4498.590587 C = 6235.894313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.467 3.533 3 O -0.575 6.575 4 N -0.601 5.601 5 C -0.190 4.190 6 S 0.155 5.845 7 C 0.140 3.860 8 C -0.400 4.400 9 H 0.100 0.900 10 C 0.016 3.984 11 N -0.808 5.808 12 Si 1.021 2.979 13 H -0.252 1.252 14 H -0.257 1.257 15 H -0.257 1.257 16 N -0.610 5.610 17 C 0.087 3.913 18 C -0.020 4.020 19 C -0.136 4.136 20 C -0.107 4.107 21 C -0.123 4.123 22 C -0.117 4.117 23 C -0.120 4.120 24 H 0.117 0.883 25 H 0.096 0.904 26 H 0.114 0.886 27 H 0.415 0.585 28 H 0.310 0.690 29 H 0.122 0.878 30 H 0.161 0.839 31 H 0.159 0.841 32 H 0.145 0.855 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.934 -8.643 0.217 13.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.256 3.744 3 O -0.456 6.456 4 N -0.248 5.248 5 C -0.410 4.410 6 S 0.411 5.589 7 C -0.114 4.114 8 C -0.442 4.442 9 H 0.118 0.882 10 C -0.202 4.202 11 N -0.438 5.438 12 Si 0.838 3.162 13 H -0.175 1.175 14 H -0.182 1.182 15 H -0.181 1.181 16 N -0.332 5.332 17 C -0.053 4.053 18 C -0.022 4.022 19 C -0.156 4.156 20 C -0.125 4.125 21 C -0.141 4.141 22 C -0.134 4.134 23 C -0.139 4.139 24 H 0.135 0.865 25 H 0.115 0.885 26 H 0.132 0.868 27 H 0.255 0.745 28 H 0.123 0.877 29 H 0.140 0.860 30 H 0.178 0.822 31 H 0.177 0.823 32 H 0.163 0.837 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.442 -6.893 0.221 11.692 hybrid contribution 0.442 -0.534 -0.100 0.700 sum -9.000 -7.427 0.121 11.669 Atomic orbital electron populations 1.21852 0.85673 1.06632 1.06704 1.22261 0.93269 0.82553 0.76306 1.90672 1.71140 1.32542 1.51238 1.42377 1.02104 1.10047 1.70283 1.24427 0.89162 1.00538 1.26830 1.86346 0.94764 1.03461 1.74316 1.24364 0.99145 0.90201 0.97660 1.19258 0.90846 0.93449 1.40656 0.88190 1.27273 1.06210 0.95458 0.91303 1.68720 1.35819 1.05765 1.33484 0.84552 0.73158 0.78898 0.79545 1.17535 1.18153 1.18132 1.66854 1.15043 1.18593 1.32718 1.19175 0.88050 0.92305 1.05789 1.18536 0.95519 0.90007 0.98158 1.21302 0.95694 0.98517 1.00068 1.21402 1.00783 0.91291 0.98982 1.21586 0.94913 1.00653 0.96992 1.21376 0.97087 0.95261 0.99714 1.21268 0.99379 0.93641 0.99648 0.86487 0.88497 0.86797 0.74453 0.87667 0.86048 0.82172 0.82327 0.83730 0.88247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 10.32 71.24 0.74 -2.41 16 2 C 0.47 17.49 7.90 87.66 0.69 18.18 16 3 O -0.58 -28.08 14.65 -3.02 -0.04 -28.12 16 4 N -0.60 -23.51 4.94 -303.95 -1.50 -25.01 16 5 C -0.19 -9.60 7.11 83.83 0.60 -9.01 16 6 S 0.16 8.87 17.48 -56.49 -0.99 7.88 16 7 C 0.14 8.30 7.10 85.08 0.60 8.90 16 8 C -0.40 -22.23 9.42 23.04 0.22 -22.01 16 9 H 0.10 5.38 7.85 -2.91 -0.02 5.35 16 10 C 0.02 0.79 5.50 85.28 0.47 1.26 16 11 N -0.81 -42.14 10.60 21.85 0.23 -41.91 16 12 Si 1.02 36.99 29.56 68.60 2.03 39.01 16 13 H -0.25 -8.89 7.11 99.48 0.71 -8.18 16 14 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 15 H -0.26 -8.79 7.11 99.48 0.71 -8.08 16 16 N -0.61 -35.19 10.39 -183.41 -1.91 -37.10 16 17 C 0.09 4.46 6.43 41.98 0.27 4.73 16 18 C -0.02 -0.81 5.75 -20.04 -0.12 -0.93 16 19 C -0.14 -4.31 8.27 22.53 0.19 -4.13 16 20 C -0.11 -2.45 10.03 22.23 0.22 -2.23 16 21 C -0.12 -2.69 10.04 22.34 0.22 -2.47 16 22 C -0.12 -3.18 10.03 22.23 0.22 -2.95 16 23 C -0.12 -4.52 9.66 22.53 0.22 -4.31 16 24 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.10 1.99 8.12 -2.39 -0.02 1.97 16 26 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.41 12.86 5.79 -92.70 -0.54 12.32 16 28 H 0.31 14.33 8.30 -92.70 -0.77 13.56 16 29 H 0.12 3.64 6.27 -2.91 -0.02 3.62 16 30 H 0.16 2.35 8.06 -2.91 -0.02 2.32 16 31 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 32 H 0.14 3.07 8.06 -2.91 -0.02 3.04 16 33 H 0.10 4.16 8.05 -2.91 -0.02 4.13 16 Total: -1.00 -78.01 301.32 2.99 -75.03 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: 0.62 Total: 27.58 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: 4.54 Total: -17.37 kcal Atomic # 7 Polarization: -100.84 SS G_CDS: -3.17 Total: -104.01 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -0.04 Total: -28.12 kcal Atomic # 14 Polarization: 36.99 SS G_CDS: 2.03 Total: 39.01 kcal Atomic # 16 Polarization: 8.87 SS G_CDS: -0.99 Total: 7.88 kcal Total: -78.01 2.99 -75.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008917122.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.261 kcal (2) G-P(sol) polarization free energy of solvation -78.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds