Wall clock time and date at job start Tue Mar 31 2020 03:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99467 * 2 1 4 4 H 1.48504 * 109.47379 * 270.00023 * 3 2 1 5 5 H 1.48499 * 109.47449 * 30.00180 * 3 2 1 6 6 H 1.48511 * 109.46895 * 150.00283 * 3 2 1 7 7 C 1.37873 * 120.00247 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00109 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00061 * 179.97438 * 7 2 1 10 10 S 1.81004 * 109.47175 * 179.97438 * 9 7 2 11 11 C 1.76202 * 99.99965 * 180.02562 * 10 9 7 12 12 C 1.40273 * 118.84121 * 180.02562 * 11 10 9 13 13 C 1.38619 * 119.43006 * 179.97438 * 12 11 10 14 14 C 1.47935 * 121.32955 * 179.97438 * 13 12 11 15 15 N 1.34777 * 120.00021 * 354.30635 * 14 13 12 16 16 O 1.21543 * 119.99631 * 174.31025 * 14 13 12 17 17 C 1.46375 * 117.33581 * 0.02562 * 13 12 11 18 18 C 1.39896 * 121.50650 * 180.02562 * 17 13 12 19 19 C 1.36362 * 119.59889 * 180.02562 * 18 17 13 20 20 C 1.39265 * 120.79493 * 359.97438 * 19 18 17 21 21 C 1.36147 * 121.07075 * 0.02562 * 20 19 18 22 22 C 1.40614 * 119.72627 * 359.97438 * 21 20 19 23 23 N 1.31482 * 118.84200 * 359.97438 * 11 10 9 24 24 H 0.96996 * 120.00607 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47348 * 59.99967 * 9 7 2 26 26 H 1.08996 * 109.47076 * 299.99895 * 9 7 2 27 27 H 1.07992 * 120.28435 * 0.02602 * 12 11 10 28 28 H 0.96997 * 120.00142 * 0.02562 * 15 14 13 29 29 H 0.97002 * 119.99686 * 180.02562 * 15 14 13 30 30 H 1.08003 * 120.19713 * 0.02562 * 18 17 13 31 31 H 1.08004 * 119.60328 * 180.27890 * 19 18 17 32 32 H 1.08002 * 119.46670 * 180.02562 * 20 19 18 33 33 H 1.08002 * 120.13339 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 16 4.1150 -2.9004 -0.0010 11 6 5.8529 -2.6104 -0.0009 12 6 6.7226 -3.7110 -0.0014 13 6 8.0922 -3.4969 -0.0019 14 6 9.0473 -4.6266 -0.0018 15 7 8.5956 -5.8910 0.1146 16 8 10.2395 -4.4143 -0.1066 17 6 8.5554 -2.1084 -0.0014 18 6 9.9182 -1.7924 -0.0024 19 6 10.3065 -0.4852 -0.0013 20 6 9.3628 0.5389 0.0002 21 6 8.0290 0.2654 0.0012 22 6 7.5914 -1.0709 0.0002 23 7 6.2890 -1.3700 -0.0015 24 1 -0.4851 0.8400 0.0004 25 1 3.8753 -0.6803 0.8888 26 1 3.8745 -0.6799 -0.8911 27 1 6.3286 -4.7165 -0.0021 28 1 7.6441 -6.0604 0.1979 29 1 9.2219 -6.6317 0.1150 30 1 10.6583 -2.5790 -0.0040 31 1 11.3586 -0.2411 -0.0066 32 1 9.6942 1.5668 0.0006 33 1 7.3102 1.0714 0.0028 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012760373.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:34 Heat of formation + Delta-G solvation = 14.733657 kcal Electronic energy + Delta-G solvation = -19277.271923 eV Core-core repulsion = 16200.871684 eV Total energy + Delta-G solvation = -3076.400239 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.84831 -39.21207 -37.01009 -34.25783 -33.18472 -32.96753 -30.51290 -30.05282 -29.32778 -25.37663 -23.87601 -22.89700 -22.31141 -21.03508 -18.58623 -18.09552 -17.64838 -16.97583 -16.59686 -16.03460 -15.19054 -15.02986 -14.90018 -14.51618 -14.22420 -14.17799 -13.70883 -13.27670 -13.12544 -12.84058 -12.46229 -11.85951 -11.68109 -11.56106 -10.85266 -10.75176 -10.47951 -10.45047 -10.21516 -10.08438 -9.89672 -9.38551 -9.23690 -9.14035 -8.75023 -8.39515 -7.01752 -6.24101 -4.28372 0.04046 0.79729 1.65107 2.03708 2.65212 2.99596 3.05568 3.15872 3.24512 3.33257 3.36457 4.11534 4.29847 4.31043 4.39782 4.69699 4.76679 4.95083 5.09272 5.10171 5.20988 5.31640 5.50409 5.67446 5.90316 6.08618 6.29825 6.39441 6.44914 6.55359 6.68714 6.72500 6.84448 6.94418 7.35000 7.87633 7.89418 8.19399 8.73479 9.31868 10.87304 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.019578 B = 0.004969 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.832436 B = 5633.804303 C = 7047.168101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.085 3.915 3 Si 0.875 3.125 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.527 4.527 8 H 0.083 0.917 9 C 0.035 3.965 10 S -0.057 6.057 11 C 0.145 3.855 12 C -0.104 4.104 13 C -0.078 4.078 14 C 0.574 3.426 15 N -0.845 5.845 16 O -0.531 6.531 17 C -0.082 4.082 18 C -0.095 4.095 19 C -0.128 4.128 20 C -0.099 4.099 21 C -0.098 4.098 22 C 0.145 3.855 23 N -0.466 5.466 24 H 0.269 0.731 25 H 0.051 0.949 26 H 0.046 0.954 27 H 0.145 0.855 28 H 0.405 0.595 29 H 0.408 0.592 30 H 0.159 0.841 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.737 -6.827 0.443 19.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.120 4.120 3 Si 0.701 3.299 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.183 1.183 7 C -0.566 4.566 8 H 0.101 0.899 9 C -0.113 4.113 10 S 0.187 5.813 11 C -0.119 4.119 12 C -0.130 4.130 13 C -0.090 4.090 14 C 0.360 3.640 15 N -0.409 5.409 16 O -0.408 6.408 17 C -0.088 4.088 18 C -0.113 4.113 19 C -0.147 4.147 20 C -0.119 4.119 21 C -0.118 4.118 22 C 0.021 3.979 23 N -0.181 5.181 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.163 0.837 28 H 0.235 0.765 29 H 0.240 0.760 30 H 0.176 0.824 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 17.978 -6.710 0.369 19.192 hybrid contribution 1.214 1.020 0.011 1.586 sum 19.191 -5.689 0.380 20.021 Atomic orbital electron populations 1.69858 1.06202 1.27506 1.49045 1.24799 0.94705 0.98829 0.93690 0.86825 0.80680 0.83299 0.79090 1.19794 1.20875 1.18332 1.20487 0.86845 0.95421 1.53880 0.89918 1.21604 1.00338 0.88038 1.01327 1.85730 0.89380 1.18802 1.87420 1.23774 1.01572 0.90336 0.96170 1.22091 0.91908 0.99892 0.99063 1.21101 0.92843 0.92964 1.02140 1.17991 0.87542 0.82973 0.75490 1.43721 1.12863 1.07589 1.76746 1.90670 1.16375 1.84209 1.49595 1.19424 0.94882 0.91081 1.03370 1.21673 0.95050 0.97934 0.96615 1.20988 0.99744 0.92719 1.01268 1.20919 0.92683 0.99693 0.98585 1.20813 0.96122 0.94398 1.00484 1.18848 0.87886 0.93670 0.97490 1.68194 1.15776 1.19836 1.14338 0.92112 0.93053 0.93530 0.83747 0.76521 0.76041 0.82400 0.85687 0.85464 0.84628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.35 13.96 55.43 0.77 -25.57 16 2 C 0.09 2.39 5.47 -17.82 -0.10 2.30 16 3 Si 0.87 21.02 27.47 -169.99 -4.67 16.35 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.26 -6.07 6.54 56.52 0.37 -5.70 16 7 C -0.53 -14.57 9.68 -34.44 -0.33 -14.90 16 8 H 0.08 2.45 7.95 -52.49 -0.42 2.03 16 9 C 0.04 0.84 3.62 36.00 0.13 0.97 16 10 S -0.06 -1.10 21.94 -107.50 -2.36 -3.46 16 11 C 0.15 2.56 6.97 -16.94 -0.12 2.45 16 12 C -0.10 -1.43 9.31 -38.68 -0.36 -1.79 16 13 C -0.08 -1.08 6.08 -102.51 -0.62 -1.70 16 14 C 0.57 6.85 8.04 -12.29 -0.10 6.76 16 15 N -0.84 -6.22 8.83 30.55 0.27 -5.95 16 16 O -0.53 -7.62 14.54 5.33 0.08 -7.55 16 17 C -0.08 -1.27 5.90 -104.71 -0.62 -1.89 16 18 C -0.09 -1.30 9.31 -39.64 -0.37 -1.67 16 19 C -0.13 -1.51 9.96 -39.88 -0.40 -1.91 16 20 C -0.10 -1.19 9.94 -39.95 -0.40 -1.58 16 21 C -0.10 -1.46 9.99 -39.44 -0.39 -1.85 16 22 C 0.14 2.47 6.61 -84.90 -0.56 1.91 16 23 N -0.47 -8.92 8.91 -9.88 -0.09 -9.00 16 24 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.05 1.25 7.16 -51.91 -0.37 0.88 16 26 H 0.05 1.13 7.53 -51.92 -0.39 0.74 16 27 H 0.14 1.40 6.57 -52.49 -0.35 1.06 16 28 H 0.40 2.12 7.02 -40.82 -0.29 1.83 16 29 H 0.41 2.21 8.93 -40.82 -0.36 1.85 16 30 H 0.16 2.18 5.16 -52.48 -0.27 1.91 16 31 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 32 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.14 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 300.11 15.07 4.52 4.52 Total: -1.00 -32.71 300.11 -8.59 -41.31 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -2.88 Total: 2.28 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -4.24 Total: -12.92 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.96 Total: -40.53 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: 0.08 Total: -7.55 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Atomic # 16 Polarization: -1.10 SS G_CDS: -2.36 Total: -3.46 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.71 -8.59 -41.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012760373.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.040 kcal (2) G-P(sol) polarization free energy of solvation -32.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds