Wall clock time and date at job start Tue Mar 31 2020 04:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.37542 * 111.00394 * 2 1 4 4 C 1.46905 * 121.11490 * 240.23660 * 3 2 1 5 5 C 1.39847 * 120.92318 * 359.97438 * 4 3 2 6 6 C 1.36677 * 119.73015 * 180.33682 * 5 4 3 7 7 C 1.38751 * 120.43514 * 0.02562 * 6 5 4 8 8 C 1.37986 * 120.67972 * 359.94481 * 7 6 5 9 9 C 1.38908 * 119.88490 * 0.08028 * 8 7 6 10 10 O 1.35004 * 120.50883 * 179.97438 * 9 8 7 11 11 C 1.34209 * 122.11253 * 180.02562 * 10 9 8 12 12 O 1.21771 * 119.19578 * 179.97438 * 11 10 9 13 13 C 1.39702 * 121.10722 * 59.99944 * 3 2 1 14 14 N 1.38656 * 120.39985 * 359.97438 * 13 3 2 15 15 C 1.34774 * 120.00359 * 248.91047 * 14 13 3 16 16 O 1.21950 * 119.99651 * 355.36461 * 15 14 13 17 17 C 1.40856 * 120.00352 * 175.36403 * 15 14 13 18 18 H 1.07996 * 119.99960 * 359.97438 * 17 15 14 19 19 C 1.40140 * 120.00218 * 180.02562 * 17 15 14 20 20 N 1.30633 * 120.00230 * 0.02562 * 19 17 15 21 21 Si 1.86806 * 120.00413 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46993 * 59.99799 * 21 19 17 23 23 H 1.48494 * 109.47523 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47010 * 300.00619 * 21 19 17 25 25 H 1.08998 * 109.46793 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46627 * 300.00024 * 1 2 3 27 27 H 1.09002 * 109.47147 * 59.99709 * 1 2 3 28 28 H 1.00907 * 110.99913 * 236.04678 * 2 1 3 29 29 H 1.08000 * 120.13208 * 0.30501 * 5 4 3 30 30 H 1.08000 * 119.77823 * 179.97438 * 6 5 4 31 31 H 1.07995 * 119.65665 * 179.97438 * 7 6 5 32 32 H 1.07998 * 120.05781 * 180.02562 * 8 7 6 33 33 H 0.97007 * 119.99568 * 69.19481 * 14 13 3 34 34 H 0.97004 * 120.00354 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9620 1.2840 0.0000 4 6 2.8170 1.7689 -1.0918 5 6 3.1548 0.9368 -2.1638 6 6 3.9576 1.4111 -3.1631 7 6 4.4394 2.7116 -3.1202 8 6 4.1166 3.5477 -2.0711 9 6 3.3026 3.0871 -1.0441 10 8 2.9792 3.8942 -0.0114 11 6 2.1960 3.4826 0.9977 12 8 1.9385 4.2552 1.9030 13 6 1.6624 2.1722 1.0359 14 7 0.8560 1.7733 2.0910 15 6 -0.3772 2.2982 2.2326 16 8 -0.7522 3.1847 1.4839 17 6 -1.2330 1.8228 3.2454 18 1 -0.9010 1.0374 3.9082 19 6 -2.5154 2.3683 3.3924 20 7 -2.9176 3.3173 2.5897 21 14 -3.6507 1.7374 4.7351 22 1 -3.0160 1.9508 6.0606 23 1 -4.9400 2.4720 4.6790 24 1 -3.8985 0.2872 4.5328 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8306 -0.5262 -0.7814 29 1 2.7833 -0.0765 -2.2016 30 1 4.2194 0.7690 -3.9912 31 1 5.0732 3.0731 -3.9164 32 1 4.4968 4.5583 -2.0481 33 1 1.1811 1.1194 2.7295 34 1 -3.8054 3.6946 2.6912 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016189461.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:31:42 Heat of formation + Delta-G solvation = -43.779927 kcal Electronic energy + Delta-G solvation = -22863.638417 eV Core-core repulsion = 19341.947968 eV Total energy + Delta-G solvation = -3521.690449 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.50669 -38.79937 -38.39396 -36.56541 -36.40389 -33.34090 -32.28367 -31.70871 -30.57282 -28.91073 -26.57898 -25.66502 -23.78751 -23.16595 -21.84629 -20.45244 -19.62861 -17.80209 -17.52233 -16.87303 -16.19122 -16.12032 -15.50752 -15.34835 -14.82520 -14.70008 -14.50235 -14.02983 -13.79190 -13.44038 -13.10626 -13.03960 -12.77485 -12.38398 -11.87665 -11.71184 -11.54316 -11.27069 -11.22578 -10.95877 -10.55464 -10.44398 -10.31306 -9.88039 -9.14104 -8.92114 -8.58332 -8.09866 -7.68618 -7.22384 -6.27916 -4.82346 0.47318 1.12157 1.76221 2.78269 3.11586 3.17001 3.18584 3.21241 3.77914 4.03964 4.10137 4.28729 4.38599 4.49507 4.72641 4.74817 5.08662 5.11830 5.37618 5.45699 5.58847 5.69484 5.73743 5.74428 5.98605 6.01865 6.16801 6.23367 6.53930 6.56950 6.96435 7.27029 7.31875 7.63566 7.94611 8.04156 8.12538 8.36091 8.89026 9.42789 10.49211 10.74337 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.028717 B = 0.004970 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.781389 B = 5632.496536 C = 6207.947168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.610 5.610 3 C 0.142 3.858 4 C -0.138 4.138 5 C -0.075 4.075 6 C -0.141 4.141 7 C -0.080 4.080 8 C -0.132 4.132 9 C 0.152 3.848 10 O -0.283 6.283 11 C 0.509 3.491 12 O -0.438 6.438 13 C 0.040 3.960 14 N -0.683 5.683 15 C 0.553 3.447 16 O -0.570 6.570 17 C -0.540 4.540 18 H 0.069 0.931 19 C 0.089 3.911 20 N -0.747 5.747 21 Si 0.911 3.089 22 H -0.266 1.266 23 H -0.280 1.280 24 H -0.266 1.266 25 H 0.073 0.927 26 H 0.112 0.888 27 H 0.034 0.966 28 H 0.349 0.651 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.135 0.865 32 H 0.141 0.859 33 H 0.393 0.607 34 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.705 -7.929 -11.067 17.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.232 5.232 3 C 0.034 3.966 4 C -0.141 4.141 5 C -0.093 4.093 6 C -0.160 4.160 7 C -0.098 4.098 8 C -0.150 4.150 9 C 0.106 3.894 10 O -0.195 6.195 11 C 0.354 3.646 12 O -0.322 6.322 13 C -0.063 4.063 14 N -0.336 5.336 15 C 0.363 3.637 16 O -0.453 6.453 17 C -0.575 4.575 18 H 0.087 0.913 19 C -0.133 4.133 20 N -0.374 5.374 21 Si 0.735 3.265 22 H -0.191 1.191 23 H -0.205 1.205 24 H -0.191 1.191 25 H 0.092 0.908 26 H 0.130 0.870 27 H 0.053 0.947 28 H 0.172 0.828 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.153 0.847 32 H 0.159 0.841 33 H 0.228 0.772 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.125 -6.732 -10.482 16.702 hybrid contribution -0.540 -0.592 0.159 0.817 sum 10.585 -7.324 -10.323 16.500 Atomic orbital electron populations 1.22648 0.82853 1.02759 1.04907 1.56486 1.10343 1.09884 1.46504 1.20502 0.95722 0.90620 0.89778 1.19335 1.03476 0.94137 0.97160 1.20688 0.97095 0.98796 0.92735 1.20767 0.99488 0.96316 0.99385 1.21089 0.98362 0.93320 0.97033 1.20586 0.99945 1.01624 0.92888 1.18970 0.95096 0.87955 0.87355 1.83507 1.61014 1.45242 1.29706 1.19665 0.76572 0.88664 0.79705 1.90976 1.53640 1.56136 1.31406 1.18239 1.02639 0.92034 0.93424 1.43453 1.15510 1.47517 1.27095 1.16777 0.78592 0.82356 0.86000 1.90727 1.74225 1.32249 1.48104 1.19775 0.99159 1.22226 1.16355 0.91310 1.25744 0.98242 0.93483 0.95880 1.70029 1.17419 1.18239 1.31736 0.86378 0.79049 0.79517 0.81540 1.19064 1.20459 1.19108 0.90844 0.86975 0.94679 0.82805 0.85247 0.85200 0.84739 0.84115 0.77152 0.91750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 10.34 60.07 0.62 0.85 16 2 N -0.61 -9.08 6.76 -63.08 -0.43 -9.51 16 3 C 0.14 2.49 5.99 -81.25 -0.49 2.01 16 4 C -0.14 -2.07 5.88 -104.91 -0.62 -2.69 16 5 C -0.07 -0.81 9.45 -39.54 -0.37 -1.18 16 6 C -0.14 -1.26 9.98 -39.96 -0.40 -1.66 16 7 C -0.08 -0.73 10.02 -39.48 -0.40 -1.12 16 8 C -0.13 -1.58 10.00 -39.43 -0.39 -1.98 16 9 C 0.15 2.44 6.76 -38.46 -0.26 2.18 16 10 O -0.28 -5.68 9.77 -20.70 -0.20 -5.89 16 11 C 0.51 12.06 7.55 31.99 0.24 12.31 16 12 O -0.44 -12.14 16.98 -21.22 -0.36 -12.50 16 13 C 0.04 0.89 5.34 -82.97 -0.44 0.45 16 14 N -0.68 -16.14 3.53 -12.07 -0.04 -16.18 16 15 C 0.55 15.81 5.24 -15.27 -0.08 15.73 16 16 O -0.57 -18.77 14.23 4.47 0.06 -18.70 16 17 C -0.54 -15.02 9.27 -37.88 -0.35 -15.38 16 18 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 19 C 0.09 2.46 5.50 -17.35 -0.10 2.37 16 20 N -0.75 -22.21 11.71 55.56 0.65 -21.56 16 21 Si 0.91 19.81 29.56 -169.99 -5.02 14.79 16 22 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 23 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 24 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 25 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.11 2.39 4.34 -51.93 -0.23 2.17 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.35 3.89 6.42 -39.29 -0.25 3.64 16 29 H 0.13 1.06 6.32 -52.49 -0.33 0.72 16 30 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 31 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 32 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 33 H 0.39 8.25 8.78 -40.82 -0.36 7.90 16 34 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 LS Contribution 297.62 15.07 4.49 4.49 Total: -1.00 -37.27 297.62 -6.72 -43.99 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -2.83 Total: 9.20 kcal Atomic # 6 Polarization: 14.92 SS G_CDS: -3.03 Total: 11.89 kcal Atomic # 7 Polarization: -47.43 SS G_CDS: 0.18 Total: -47.25 kcal Atomic # 8 Polarization: -36.59 SS G_CDS: -0.50 Total: -37.09 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -37.27 -6.72 -43.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016189461.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.206 kcal (2) G-P(sol) polarization free energy of solvation -37.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds