Wall clock time and date at job start Tue Mar 31 2020 04:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.37542 * 111.00394 * 2 1 4 4 C 1.46905 * 121.11490 * 240.23660 * 3 2 1 5 5 C 1.39847 * 120.92318 * 359.97438 * 4 3 2 6 6 C 1.36677 * 119.73015 * 180.33682 * 5 4 3 7 7 C 1.38751 * 120.43514 * 0.02562 * 6 5 4 8 8 C 1.37986 * 120.67972 * 359.94481 * 7 6 5 9 9 C 1.38908 * 119.88490 * 0.08028 * 8 7 6 10 10 O 1.35004 * 120.50883 * 179.97438 * 9 8 7 11 11 C 1.34209 * 122.11253 * 180.02562 * 10 9 8 12 12 O 1.21771 * 119.19578 * 179.97438 * 11 10 9 13 13 C 1.39702 * 121.10722 * 59.99944 * 3 2 1 14 14 N 1.38656 * 120.39985 * 359.97438 * 13 3 2 15 15 C 1.34774 * 120.00359 * 248.91047 * 14 13 3 16 16 O 1.21950 * 119.99651 * 355.36461 * 15 14 13 17 17 C 1.40856 * 120.00352 * 175.36403 * 15 14 13 18 18 H 1.07996 * 119.99960 * 359.97438 * 17 15 14 19 19 C 1.40140 * 120.00218 * 180.02562 * 17 15 14 20 20 N 1.30633 * 120.00230 * 0.02562 * 19 17 15 21 21 Si 1.86806 * 120.00413 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46993 * 59.99799 * 21 19 17 23 23 H 1.48494 * 109.47523 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47010 * 300.00619 * 21 19 17 25 25 H 1.08998 * 109.46793 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46627 * 300.00024 * 1 2 3 27 27 H 1.09002 * 109.47147 * 59.99709 * 1 2 3 28 28 H 1.00907 * 110.99913 * 236.04678 * 2 1 3 29 29 H 1.08000 * 120.13208 * 0.30501 * 5 4 3 30 30 H 1.08000 * 119.77823 * 179.97438 * 6 5 4 31 31 H 1.07995 * 119.65665 * 179.97438 * 7 6 5 32 32 H 1.07998 * 120.05781 * 180.02562 * 8 7 6 33 33 H 0.97007 * 119.99568 * 69.19481 * 14 13 3 34 34 H 0.97004 * 120.00354 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9620 1.2840 0.0000 4 6 2.8170 1.7689 -1.0918 5 6 3.1548 0.9368 -2.1638 6 6 3.9576 1.4111 -3.1631 7 6 4.4394 2.7116 -3.1202 8 6 4.1166 3.5477 -2.0711 9 6 3.3026 3.0871 -1.0441 10 8 2.9792 3.8942 -0.0114 11 6 2.1960 3.4826 0.9977 12 8 1.9385 4.2552 1.9030 13 6 1.6624 2.1722 1.0359 14 7 0.8560 1.7733 2.0910 15 6 -0.3772 2.2982 2.2326 16 8 -0.7522 3.1847 1.4839 17 6 -1.2330 1.8228 3.2454 18 1 -0.9010 1.0374 3.9082 19 6 -2.5154 2.3683 3.3924 20 7 -2.9176 3.3173 2.5897 21 14 -3.6507 1.7374 4.7351 22 1 -3.0160 1.9508 6.0606 23 1 -4.9400 2.4720 4.6790 24 1 -3.8985 0.2872 4.5328 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8306 -0.5262 -0.7814 29 1 2.7833 -0.0765 -2.2016 30 1 4.2194 0.7690 -3.9912 31 1 5.0732 3.0731 -3.9164 32 1 4.4968 4.5583 -2.0481 33 1 1.1811 1.1194 2.7295 34 1 -3.8054 3.6946 2.6912 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016189461.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:31:42 Heat of formation + Delta-G solvation = -72.861227 kcal Electronic energy + Delta-G solvation = -22864.899477 eV Core-core repulsion = 19341.947968 eV Total energy + Delta-G solvation = -3522.951509 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.92002 -40.26237 -39.94755 -38.23767 -37.94797 -35.20254 -34.35225 -32.93076 -31.63690 -30.44079 -28.47798 -27.14533 -25.14402 -24.40490 -23.17095 -22.25384 -20.91579 -19.52772 -19.07968 -18.39952 -17.82008 -17.51796 -17.40004 -16.69417 -16.21842 -15.95651 -15.80291 -15.66369 -15.16237 -14.79043 -14.66329 -14.47332 -14.33387 -14.18733 -13.22024 -13.07184 -12.96720 -12.77925 -12.67973 -12.62910 -12.35593 -12.06422 -11.88674 -11.48993 -10.94205 -10.19501 -9.98893 -9.76313 -9.65872 -8.86114 -8.32935 -6.99351 -0.78176 0.08615 0.52653 1.35021 1.38411 1.43390 1.54522 1.81803 2.22847 2.43466 2.56877 2.78031 2.94842 3.16300 3.56556 3.67720 3.86950 3.96489 4.18473 4.27677 4.31157 4.35849 4.47965 4.63071 4.82593 4.97939 5.11113 5.23819 5.24782 5.36705 5.53379 5.71205 5.92327 5.98632 6.15721 6.24297 6.41496 6.63418 6.77450 7.49278 8.47287 8.67916 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.028717 B = 0.004970 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.781389 B = 5632.496536 C = 6207.947168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.596 5.596 3 C 0.204 3.796 4 C -0.173 4.173 5 C -0.062 4.062 6 C -0.124 4.124 7 C -0.049 4.049 8 C -0.143 4.143 9 C 0.113 3.887 10 O -0.296 6.296 11 C 0.503 3.497 12 O -0.516 6.516 13 C -0.045 4.045 14 N -0.671 5.671 15 C 0.547 3.453 16 O -0.627 6.627 17 C -0.567 4.567 18 H 0.088 0.912 19 C 0.032 3.968 20 N -0.804 5.804 21 Si 1.001 2.999 22 H -0.259 1.259 23 H -0.273 1.273 24 H -0.245 1.245 25 H 0.113 0.887 26 H 0.066 0.934 27 H 0.030 0.970 28 H 0.378 0.622 29 H 0.164 0.836 30 H 0.180 0.820 31 H 0.182 0.818 32 H 0.152 0.848 33 H 0.398 0.602 34 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.284 -11.649 -14.267 22.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.220 5.220 3 C 0.094 3.906 4 C -0.176 4.176 5 C -0.080 4.080 6 C -0.142 4.142 7 C -0.067 4.067 8 C -0.161 4.161 9 C 0.069 3.931 10 O -0.207 6.207 11 C 0.354 3.646 12 O -0.407 6.407 13 C -0.147 4.147 14 N -0.322 5.322 15 C 0.357 3.643 16 O -0.515 6.515 17 C -0.603 4.603 18 H 0.106 0.894 19 C -0.186 4.186 20 N -0.433 5.433 21 Si 0.820 3.180 22 H -0.183 1.183 23 H -0.198 1.198 24 H -0.168 1.168 25 H 0.132 0.868 26 H 0.085 0.915 27 H 0.049 0.951 28 H 0.206 0.794 29 H 0.182 0.818 30 H 0.198 0.802 31 H 0.199 0.801 32 H 0.170 0.830 33 H 0.235 0.765 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.791 -10.544 -13.755 21.540 hybrid contribution -0.712 0.382 0.696 1.066 sum 12.079 -10.162 -13.059 20.487 Atomic orbital electron populations 1.22519 0.82947 1.04543 1.02498 1.56192 1.09753 1.08585 1.47466 1.20730 0.92004 0.89842 0.88058 1.19465 1.05189 0.94767 0.98158 1.21153 0.96291 0.99500 0.91105 1.21408 0.96876 0.96524 0.99397 1.21748 0.96243 0.92770 0.95944 1.20978 0.99438 1.03110 0.92607 1.19753 0.97174 0.88764 0.87453 1.83393 1.60398 1.46661 1.30283 1.19885 0.76229 0.88938 0.79579 1.90890 1.57302 1.57986 1.34535 1.18154 1.07373 0.93101 0.96087 1.42742 1.14488 1.46982 1.27974 1.17058 0.80096 0.81612 0.85515 1.90655 1.75985 1.34671 1.50144 1.20307 1.00067 1.23014 1.16869 0.89418 1.27050 0.99946 0.93049 0.98513 1.70216 1.18280 1.20261 1.34507 0.85028 0.76066 0.79682 0.77237 1.18316 1.19777 1.16848 0.86822 0.91511 0.95106 0.79434 0.81849 0.80228 0.80055 0.82989 0.76532 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.66 10.34 127.69 1.32 1.98 16 2 N -0.60 -16.56 6.76 -353.49 -2.39 -18.95 16 3 C 0.20 7.16 5.99 40.87 0.24 7.41 16 4 C -0.17 -4.90 5.88 -20.05 -0.12 -5.02 16 5 C -0.06 -1.02 9.45 22.29 0.21 -0.81 16 6 C -0.12 -1.31 9.98 22.03 0.22 -1.09 16 7 C -0.05 -0.60 10.02 22.33 0.22 -0.37 16 8 C -0.14 -3.07 10.00 22.37 0.22 -2.84 16 9 C 0.11 3.64 6.76 23.00 0.16 3.79 16 10 O -0.30 -12.92 9.77 15.01 0.15 -12.77 16 11 C 0.50 26.41 7.55 68.63 0.52 26.93 16 12 O -0.52 -32.21 16.98 20.62 0.35 -31.86 16 13 C -0.04 -2.12 5.34 39.23 0.21 -1.91 16 14 N -0.67 -34.23 3.53 -310.22 -1.09 -35.33 16 15 C 0.55 33.71 5.24 84.88 0.44 34.16 16 16 O -0.63 -44.87 14.23 -4.68 -0.07 -44.93 16 17 C -0.57 -33.24 9.27 23.37 0.22 -33.02 16 18 H 0.09 4.58 7.85 -2.91 -0.02 4.56 16 19 C 0.03 1.84 5.50 85.33 0.47 2.30 16 20 N -0.80 -50.68 11.71 21.85 0.26 -50.42 16 21 Si 1.00 41.59 29.56 68.60 2.03 43.61 16 22 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 23 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 24 H -0.25 -9.25 7.11 99.48 0.71 -8.54 16 25 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 26 H 0.07 2.93 4.34 -2.39 -0.01 2.92 16 27 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.38 6.72 6.42 -89.69 -0.58 6.15 16 29 H 0.16 1.51 6.32 -2.91 -0.02 1.49 16 30 H 0.18 0.36 8.06 -2.91 -0.02 0.33 16 31 H 0.18 0.65 8.06 -2.91 -0.02 0.63 16 32 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 33 H 0.40 18.08 8.78 -92.70 -0.81 17.26 16 34 H 0.28 15.73 8.29 -92.71 -0.77 14.96 16 Total: -1.00 -96.07 297.62 3.37 -92.70 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: -0.20 Total: 26.44 kcal Atomic # 6 Polarization: 27.17 SS G_CDS: 4.34 Total: 31.51 kcal Atomic # 7 Polarization: -101.47 SS G_CDS: -3.23 Total: -104.70 kcal Atomic # 8 Polarization: -90.00 SS G_CDS: 0.43 Total: -89.57 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.61 kcal Total: -96.07 3.37 -92.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016189461.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.837 kcal (2) G-P(sol) polarization free energy of solvation -96.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds