Wall clock time and date at job start Tue Mar 31 2020 03:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 120.00369 * 2 1 4 4 H 1.48497 * 109.46806 * 270.00197 * 3 2 1 5 5 H 1.48503 * 109.46705 * 29.99775 * 3 2 1 6 6 H 1.48497 * 109.47245 * 150.00022 * 3 2 1 7 7 C 1.37884 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99997 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99790 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.46997 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99784 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00218 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.99939 * 180.02562 * 11 10 9 14 14 N 1.46497 * 109.47184 * 180.02562 * 13 11 10 15 15 C 1.34527 * 124.46173 * 269.97803 * 14 13 11 16 16 O 1.21445 * 125.70798 * 0.03494 * 15 14 13 17 17 C 1.47815 * 108.57968 * 180.02562 * 15 14 13 18 18 C 1.38565 * 134.29113 * 180.02562 * 17 15 14 19 19 C 1.38612 * 119.71975 * 179.97438 * 18 17 15 20 20 C 1.38234 * 120.45518 * 0.02900 * 19 18 17 21 21 C 1.38604 * 120.46148 * 359.95875 * 20 19 18 22 22 C 1.38570 * 119.72412 * 0.02562 * 21 20 19 23 23 C 1.34527 * 124.46351 * 89.99810 * 14 13 11 24 24 O 1.21449 * 125.70270 * 0.02562 * 23 14 13 25 25 H 0.97001 * 119.99907 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.46729 * 60.00236 * 9 7 2 27 27 H 1.08999 * 109.47121 * 300.00623 * 9 7 2 28 28 H 0.97003 * 119.99852 * 0.02562 * 10 9 7 29 29 H 1.09004 * 109.47107 * 60.00430 * 13 11 10 30 30 H 1.08999 * 109.47371 * 300.00258 * 13 11 10 31 31 H 1.08008 * 120.14186 * 359.68328 * 18 17 15 32 32 H 1.08000 * 119.77048 * 179.97438 * 19 18 17 33 33 H 1.08002 * 119.76600 * 179.97438 * 20 19 18 34 34 H 1.07996 * 120.14014 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5613 -5.1050 0.0000 13 6 2.7329 -6.0288 0.0006 14 7 2.0004 -7.2975 0.0005 15 6 1.6197 -7.9568 1.1096 16 8 1.8250 -7.5998 2.2520 17 6 0.9094 -9.1883 0.7049 18 6 0.3081 -10.2293 1.3940 19 6 -0.2891 -11.2642 0.6914 20 6 -0.2881 -11.2647 -0.6909 21 6 0.3092 -10.2300 -1.3935 22 6 0.9099 -9.1885 -0.7045 23 6 1.6202 -7.9569 -1.1088 24 8 1.8271 -7.6004 -2.2512 25 1 -0.4850 0.8401 -0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8896 28 1 3.1567 -3.4354 -0.0002 29 1 3.3595 -5.9707 0.8907 30 1 3.3597 -5.9715 -0.8893 31 1 0.3088 -10.2367 2.4741 32 1 -0.7577 -12.0761 1.2277 33 1 -0.7564 -12.0769 -1.2272 34 1 0.3066 -10.2354 -2.4735 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031677299.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:10 Heat of formation + Delta-G solvation = -50.966382 kcal Electronic energy + Delta-G solvation = -21635.412074 eV Core-core repulsion = 18113.409997 eV Total energy + Delta-G solvation = -3522.002077 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.41931 -39.12219 -38.64297 -38.29870 -35.80880 -34.26014 -32.60430 -32.23494 -31.43872 -28.85975 -26.80967 -25.24240 -23.76340 -22.40490 -22.36515 -20.36596 -19.71165 -17.96201 -17.70984 -17.37196 -16.61834 -16.24216 -15.47272 -15.43846 -15.18510 -14.76612 -14.70222 -14.57137 -14.30540 -13.98775 -13.98050 -13.11984 -12.81058 -12.66838 -12.55061 -12.00223 -11.99238 -11.59320 -11.01052 -10.89422 -10.68557 -10.39724 -10.38976 -10.26238 -9.55425 -9.52651 -9.42624 -9.03943 -8.76911 -7.97533 -6.17809 -4.25211 -0.12986 0.67162 1.85470 2.14719 2.88990 3.15391 3.24310 3.30191 3.31794 3.32746 3.47613 3.97732 4.16287 4.32213 4.35069 4.53479 4.74147 4.90798 4.96284 5.14224 5.14273 5.18565 5.22893 5.43833 5.49029 5.64595 5.78297 5.85375 6.26282 6.57662 7.13669 7.24311 7.31978 7.48031 7.56122 7.63798 7.93794 8.50628 8.71482 8.96846 9.40981 10.92427 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.035307 B = 0.003231 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.843647 B = 8664.132397 C = 8812.106364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.250 3.750 10 N -0.704 5.704 11 C 0.485 3.515 12 O -0.546 6.546 13 C 0.089 3.911 14 N -0.557 5.557 15 C 0.579 3.421 16 O -0.459 6.459 17 C -0.132 4.132 18 C -0.047 4.047 19 C -0.099 4.099 20 C -0.099 4.099 21 C -0.047 4.047 22 C -0.132 4.132 23 C 0.579 3.421 24 O -0.459 6.459 25 H 0.266 0.734 26 H 0.028 0.972 27 H 0.028 0.972 28 H 0.393 0.607 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.575 -24.192 0.004 24.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.082 0.918 9 C 0.130 3.870 10 N -0.353 5.353 11 C 0.268 3.732 12 O -0.424 6.424 13 C -0.035 4.035 14 N -0.298 5.298 15 C 0.368 3.632 16 O -0.330 6.330 17 C -0.136 4.136 18 C -0.065 4.065 19 C -0.117 4.117 20 C -0.117 4.117 21 C -0.065 4.065 22 C -0.136 4.136 23 C 0.368 3.632 24 O -0.330 6.330 25 H 0.076 0.924 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.226 0.774 29 H 0.141 0.859 30 H 0.141 0.859 31 H 0.160 0.840 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.815 -23.707 0.009 23.873 hybrid contribution 0.809 1.236 -0.009 1.477 sum 3.624 -22.471 0.000 22.761 Atomic orbital electron populations 1.69976 1.06146 1.27376 1.48731 1.24963 0.94929 0.99513 0.94625 0.86386 0.79606 0.82517 0.78236 1.20427 1.20985 1.19696 1.21208 0.93307 0.90309 1.53442 0.91754 1.19159 0.88240 0.81721 0.97905 1.46384 1.11423 1.05669 1.71816 1.20510 0.89619 0.84722 0.78396 1.90693 1.16477 1.84679 1.50596 1.21663 0.94328 0.80619 1.06871 1.45985 1.53168 1.22136 1.08549 1.18290 0.77414 0.83377 0.84111 1.90807 1.52283 1.70614 1.19288 1.20568 1.02048 0.96477 0.94512 1.20806 0.93736 0.91038 1.00956 1.21445 0.97797 0.98012 0.94407 1.21443 0.97784 0.98029 0.94407 1.20803 0.93740 0.91032 1.00957 1.20566 1.02068 0.96458 0.94510 1.18288 0.77420 0.83369 0.84109 1.90808 1.52270 1.70626 1.19296 0.92395 0.95369 0.95372 0.77404 0.85886 0.85893 0.83999 0.84124 0.84125 0.84001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.91 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.54 -14.88 9.28 -34.44 -0.32 -15.20 16 8 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 9 C 0.25 6.75 5.43 -5.19 -0.03 6.72 16 10 N -0.70 -15.00 5.55 -61.48 -0.34 -15.35 16 11 C 0.48 10.06 7.90 -10.99 -0.09 9.98 16 12 O -0.55 -13.79 16.43 5.56 0.09 -13.70 16 13 C 0.09 1.35 6.22 -5.20 -0.03 1.31 16 14 N -0.56 -8.77 2.11 -118.91 -0.25 -9.02 16 15 C 0.58 8.95 8.02 -12.46 -0.10 8.85 16 16 O -0.46 -8.05 17.68 5.41 0.10 -7.95 16 17 C -0.13 -1.63 6.40 -104.83 -0.67 -2.30 16 18 C -0.05 -0.41 10.09 -39.32 -0.40 -0.81 16 19 C -0.10 -0.61 10.04 -39.45 -0.40 -1.00 16 20 C -0.10 -0.61 10.04 -39.45 -0.40 -1.00 16 21 C -0.05 -0.41 10.09 -39.32 -0.40 -0.81 16 22 C -0.13 -1.63 6.41 -104.84 -0.67 -2.30 16 23 C 0.58 8.95 8.02 -12.46 -0.10 8.85 16 24 O -0.46 -8.05 17.68 5.41 0.10 -7.95 16 25 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.39 6.93 8.32 -40.82 -0.34 6.59 16 29 H 0.12 1.52 7.97 -51.93 -0.41 1.11 16 30 H 0.12 1.52 7.96 -51.93 -0.41 1.11 16 31 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 32 H 0.14 0.43 8.06 -52.49 -0.42 0.00 16 33 H 0.14 0.43 8.06 -52.49 -0.42 0.00 16 34 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 315.65 15.07 4.76 4.76 Total: -1.00 -36.80 315.65 -6.77 -43.57 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -3.24 Total: 1.33 kcal Atomic # 6 Polarization: 17.66 SS G_CDS: -3.69 Total: 13.97 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: 0.14 Total: -50.00 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: 0.28 Total: -29.60 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -36.80 -6.77 -43.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031677299.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.399 kcal (2) G-P(sol) polarization free energy of solvation -36.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds