Wall clock time and date at job start Tue Mar 31 2020 03:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 120.00369 * 2 1 4 4 H 1.48497 * 109.46806 * 270.00197 * 3 2 1 5 5 H 1.48503 * 109.46705 * 29.99775 * 3 2 1 6 6 H 1.48497 * 109.47245 * 150.00022 * 3 2 1 7 7 C 1.37884 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99997 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99790 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.46997 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99784 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00218 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.99939 * 180.02562 * 11 10 9 14 14 N 1.46497 * 109.47184 * 180.02562 * 13 11 10 15 15 C 1.34527 * 124.46173 * 269.97803 * 14 13 11 16 16 O 1.21445 * 125.70798 * 0.03494 * 15 14 13 17 17 C 1.47815 * 108.57968 * 180.02562 * 15 14 13 18 18 C 1.38565 * 134.29113 * 180.02562 * 17 15 14 19 19 C 1.38612 * 119.71975 * 179.97438 * 18 17 15 20 20 C 1.38234 * 120.45518 * 0.02900 * 19 18 17 21 21 C 1.38604 * 120.46148 * 359.95875 * 20 19 18 22 22 C 1.38570 * 119.72412 * 0.02562 * 21 20 19 23 23 C 1.34527 * 124.46351 * 89.99810 * 14 13 11 24 24 O 1.21449 * 125.70270 * 0.02562 * 23 14 13 25 25 H 0.97001 * 119.99907 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.46729 * 60.00236 * 9 7 2 27 27 H 1.08999 * 109.47121 * 300.00623 * 9 7 2 28 28 H 0.97003 * 119.99852 * 0.02562 * 10 9 7 29 29 H 1.09004 * 109.47107 * 60.00430 * 13 11 10 30 30 H 1.08999 * 109.47371 * 300.00258 * 13 11 10 31 31 H 1.08008 * 120.14186 * 359.68328 * 18 17 15 32 32 H 1.08000 * 119.77048 * 179.97438 * 19 18 17 33 33 H 1.08002 * 119.76600 * 179.97438 * 20 19 18 34 34 H 1.07996 * 120.14014 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5613 -5.1050 0.0000 13 6 2.7329 -6.0288 0.0006 14 7 2.0004 -7.2975 0.0005 15 6 1.6197 -7.9568 1.1096 16 8 1.8250 -7.5998 2.2520 17 6 0.9094 -9.1883 0.7049 18 6 0.3081 -10.2293 1.3940 19 6 -0.2891 -11.2642 0.6914 20 6 -0.2881 -11.2647 -0.6909 21 6 0.3092 -10.2300 -1.3935 22 6 0.9099 -9.1885 -0.7045 23 6 1.6202 -7.9569 -1.1088 24 8 1.8271 -7.6004 -2.2512 25 1 -0.4850 0.8401 -0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8896 28 1 3.1567 -3.4354 -0.0002 29 1 3.3595 -5.9707 0.8907 30 1 3.3597 -5.9715 -0.8893 31 1 0.3088 -10.2367 2.4741 32 1 -0.7577 -12.0761 1.2277 33 1 -0.7564 -12.0769 -1.2272 34 1 0.3066 -10.2354 -2.4735 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000031677299.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:09 Heat of formation + Delta-G solvation = -78.712668 kcal Electronic energy + Delta-G solvation = -21636.615243 eV Core-core repulsion = 18113.409997 eV Total energy + Delta-G solvation = -3523.205246 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.49574 -40.63425 -39.85935 -39.34014 -37.03886 -36.25314 -34.49031 -33.40620 -32.12074 -30.34258 -28.54621 -26.25829 -25.16863 -23.95655 -23.26268 -21.86030 -20.99998 -19.38377 -18.87521 -18.54845 -18.09462 -17.52912 -17.04424 -16.81808 -16.60095 -16.34816 -15.98304 -15.49497 -15.42329 -15.23609 -15.04378 -14.74465 -14.36427 -14.08703 -13.71636 -13.32404 -13.24171 -12.99240 -12.73910 -12.71771 -12.26874 -11.81104 -11.65561 -11.53960 -11.53135 -10.85562 -10.76360 -10.21457 -10.18811 -9.99825 -8.32998 -6.50468 -1.03850 -0.01095 0.96448 1.01672 1.41446 1.44045 1.47850 1.55617 1.72878 2.28180 2.48496 2.53959 2.65234 3.02000 3.15641 3.59742 3.68065 3.86020 4.02589 4.06360 4.16000 4.19131 4.27386 4.48289 4.84818 4.93669 5.01404 5.14626 5.21997 5.26986 5.36911 5.44440 5.57751 5.71498 5.77374 6.00672 6.40266 6.58371 6.70294 7.15522 7.30159 8.79488 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.035307 B = 0.003231 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.843647 B = 8664.132397 C = 8812.106364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.989 3.011 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.254 1.254 7 C -0.557 4.557 8 H 0.088 0.912 9 C 0.267 3.733 10 N -0.697 5.697 11 C 0.480 3.520 12 O -0.597 6.597 13 C 0.098 3.902 14 N -0.568 5.568 15 C 0.573 3.427 16 O -0.494 6.494 17 C -0.159 4.159 18 C -0.046 4.046 19 C -0.080 4.080 20 C -0.080 4.080 21 C -0.045 4.045 22 C -0.159 4.159 23 C 0.573 3.427 24 O -0.494 6.494 25 H 0.269 0.731 26 H -0.013 1.013 27 H -0.013 1.013 28 H 0.414 0.586 29 H 0.154 0.846 30 H 0.154 0.846 31 H 0.156 0.844 32 H 0.185 0.815 33 H 0.185 0.815 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.511 -26.439 0.013 26.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.811 3.189 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.177 1.177 7 C -0.595 4.595 8 H 0.106 0.894 9 C 0.144 3.856 10 N -0.347 5.347 11 C 0.265 3.735 12 O -0.479 6.479 13 C -0.026 4.026 14 N -0.308 5.308 15 C 0.364 3.636 16 O -0.367 6.367 17 C -0.163 4.163 18 C -0.064 4.064 19 C -0.098 4.098 20 C -0.098 4.098 21 C -0.064 4.064 22 C -0.163 4.163 23 C 0.364 3.636 24 O -0.367 6.367 25 H 0.078 0.922 26 H 0.005 0.995 27 H 0.005 0.995 28 H 0.251 0.749 29 H 0.171 0.829 30 H 0.171 0.829 31 H 0.173 0.827 32 H 0.203 0.797 33 H 0.203 0.797 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.804 -25.996 0.017 26.273 hybrid contribution 0.402 1.756 -0.013 1.801 sum 4.205 -24.241 0.004 24.603 Atomic orbital electron populations 1.70145 1.08390 1.28686 1.49809 1.26123 0.95810 1.04090 0.93704 0.85101 0.78486 0.76643 0.78652 1.19523 1.20922 1.17727 1.21613 0.94463 0.90274 1.53150 0.89409 1.18588 0.88657 0.84218 0.94097 1.46080 1.11681 1.04964 1.71960 1.21540 0.89981 0.85600 0.76333 1.90658 1.19212 1.85498 1.52517 1.21719 0.92824 0.78314 1.09762 1.46189 1.53381 1.22054 1.09188 1.18912 0.76847 0.84319 0.83514 1.90767 1.53904 1.71806 1.20239 1.20497 1.04369 0.96693 0.94747 1.21203 0.92760 0.90510 1.01934 1.21994 0.95600 0.97562 0.94624 1.21991 0.95587 0.97582 0.94625 1.21199 0.92764 0.90503 1.01932 1.20496 1.04390 0.96674 0.94746 1.18910 0.76855 0.84310 0.83512 1.90768 1.53891 1.71817 1.20245 0.92174 0.99489 0.99484 0.74948 0.82867 0.82875 0.82671 0.79737 0.79738 0.82677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.40 13.29 21.45 0.28 -57.12 16 2 C 0.00 0.13 5.46 84.66 0.46 0.59 16 3 Si 0.99 42.96 29.54 68.60 2.03 44.98 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 6 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 7 C -0.56 -30.92 9.28 25.60 0.24 -30.68 16 8 H 0.09 4.35 7.60 -2.91 -0.02 4.33 16 9 C 0.27 15.21 5.43 85.64 0.46 15.67 16 10 N -0.70 -30.68 5.55 -466.80 -2.59 -33.27 16 11 C 0.48 20.80 7.90 87.66 0.69 21.49 16 12 O -0.60 -32.12 16.43 -3.03 -0.05 -32.17 16 13 C 0.10 2.98 6.22 85.63 0.53 3.51 16 14 N -0.57 -18.49 2.11 -767.04 -1.62 -20.11 16 15 C 0.57 18.35 8.02 86.82 0.70 19.04 16 16 O -0.49 -17.98 17.68 -3.54 -0.06 -18.05 16 17 C -0.16 -3.89 6.40 -20.00 -0.13 -4.02 16 18 C -0.05 -0.70 10.09 22.44 0.23 -0.47 16 19 C -0.08 -0.61 10.04 22.36 0.22 -0.39 16 20 C -0.08 -0.61 10.04 22.36 0.22 -0.39 16 21 C -0.05 -0.70 10.09 22.44 0.23 -0.47 16 22 C -0.16 -3.89 6.41 -20.00 -0.13 -4.02 16 23 C 0.57 18.35 8.02 86.81 0.70 19.04 16 24 O -0.49 -17.99 17.68 -3.55 -0.06 -18.05 16 25 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 26 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 27 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 28 H 0.41 14.52 8.32 -92.71 -0.77 13.75 16 29 H 0.15 3.72 7.97 -2.38 -0.02 3.70 16 30 H 0.15 3.72 7.96 -2.39 -0.02 3.70 16 31 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 32 H 0.19 -0.12 8.06 -2.91 -0.02 -0.14 16 33 H 0.19 -0.12 8.06 -2.91 -0.02 -0.14 16 34 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -87.29 315.65 2.74 -84.55 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: 0.39 Total: 10.33 kcal Atomic # 6 Polarization: 34.48 SS G_CDS: 4.43 Total: 38.91 kcal Atomic # 7 Polarization: -106.58 SS G_CDS: -3.92 Total: -110.50 kcal Atomic # 8 Polarization: -68.09 SS G_CDS: -0.18 Total: -68.27 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -87.29 2.74 -84.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031677299.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.837 kcal (2) G-P(sol) polarization free energy of solvation -87.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds