Wall clock time and date at job start Tue Mar 31 2020 03:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30934 * 123.04099 * 2 1 4 4 C 1.29379 * 117.47055 * 180.02562 * 3 2 1 5 5 S 1.70923 * 110.59900 * 359.75895 * 4 3 2 6 6 C 1.36815 * 123.04209 * 180.02562 * 2 1 3 7 7 C 1.46509 * 126.18073 * 359.92959 * 6 2 1 8 8 O 1.21720 * 119.99922 * 353.26401 * 7 6 2 9 9 N 1.34774 * 119.99575 * 173.27246 * 7 6 2 10 10 C 1.36930 * 120.00352 * 3.57215 * 9 7 6 11 11 H 1.08001 * 120.00304 * 310.33944 * 10 9 7 12 12 C 1.38943 * 120.00433 * 130.34464 * 10 9 7 13 13 N 1.31413 * 119.99506 * 350.40088 * 12 10 9 14 14 Si 1.86799 * 120.00416 * 170.39385 * 12 10 9 15 15 H 1.48498 * 109.46703 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46742 * 120.00070 * 14 12 10 17 17 H 1.48501 * 109.47153 * 240.00005 * 14 12 10 18 18 C 1.39686 * 119.99443 * 183.84327 * 9 7 6 19 19 C 1.38984 * 120.08517 * 289.18877 * 18 9 7 20 20 C 1.38072 * 119.92118 * 179.74776 * 19 18 9 21 21 C 1.38320 * 120.07937 * 0.52402 * 20 19 18 22 22 C 1.38318 * 120.15854 * 359.72851 * 21 20 19 23 23 C 1.38068 * 120.08230 * 0.02562 * 22 21 20 24 24 H 1.09003 * 109.47024 * 269.95851 * 1 2 3 25 25 H 1.08995 * 109.47360 * 29.95966 * 1 2 3 26 26 H 1.09005 * 109.46883 * 149.95810 * 1 2 3 27 27 H 1.07997 * 124.70031 * 180.02562 * 4 3 2 28 28 H 0.97003 * 120.00070 * 185.02011 * 13 12 10 29 29 H 1.08000 * 120.03896 * 359.97438 * 19 18 9 30 30 H 1.08000 * 119.96654 * 180.25592 * 20 19 18 31 31 H 1.07995 * 119.92073 * 179.70609 * 21 20 19 32 32 H 1.08000 * 119.95772 * 179.97438 * 22 21 20 33 33 H 1.08003 * 120.03993 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2209 1.0976 0.0000 4 6 3.5086 0.9720 -0.0005 5 16 3.9518 -0.6787 0.0056 6 6 2.2530 -1.1469 -0.0005 7 6 1.7333 -2.5167 0.0003 8 8 0.5387 -2.7143 0.1252 9 7 2.5779 -3.5579 -0.1370 10 6 3.9281 -3.3401 -0.2039 11 1 4.3228 -2.6009 -0.8853 12 6 4.7906 -4.0700 0.6047 13 7 4.3081 -4.8293 1.5627 14 14 6.6357 -3.9722 0.3302 15 1 6.9196 -3.0541 -0.8019 16 1 7.2924 -3.4596 1.5594 17 1 7.1616 -5.3248 0.0152 18 6 2.0755 -4.8588 -0.2169 19 6 1.5234 -5.4627 0.9066 20 6 1.0230 -6.7468 0.8225 21 6 1.0806 -7.4362 -0.3753 22 6 1.6341 -6.8404 -1.4941 23 6 2.1318 -5.5547 -1.4188 24 1 -0.3633 -0.0007 1.0277 25 1 -0.3634 0.8903 -0.5132 26 1 -0.3633 -0.8897 -0.5145 27 1 4.2067 1.7960 -0.0002 28 1 4.9111 -5.2816 2.1732 29 1 1.4825 -4.9267 1.8433 30 1 0.5901 -7.2152 1.6940 31 1 0.6928 -8.4422 -0.4369 32 1 1.6778 -7.3818 -2.4276 33 1 2.5643 -5.0903 -2.2927 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058263830.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:02 Heat of formation + Delta-G solvation = 42.299843 kcal Electronic energy + Delta-G solvation = -20440.304158 eV Core-core repulsion = 17365.099279 eV Total energy + Delta-G solvation = -3075.204879 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.67044 -38.81202 -37.23254 -34.94769 -32.06649 -31.09627 -30.06761 -29.36247 -27.24106 -25.31697 -24.19914 -22.37434 -21.68463 -20.16737 -18.90957 -17.66218 -17.32449 -15.95110 -15.72727 -15.10349 -14.84299 -14.58510 -14.33159 -14.03373 -13.33304 -12.98291 -12.82970 -12.80033 -12.56272 -11.95662 -11.89679 -11.79308 -11.74315 -11.38352 -11.33114 -10.83890 -10.51863 -10.48085 -10.35221 -9.60684 -8.94025 -8.77726 -8.65189 -8.22204 -8.06783 -7.93335 -7.53446 -6.67424 -4.60232 1.07263 2.16908 2.21622 2.31103 2.60719 2.94830 3.02914 3.06073 3.25139 3.78909 4.13316 4.43113 4.59641 4.82421 4.87146 5.63623 5.69587 5.73501 5.76680 5.83481 6.02070 6.22221 6.27427 6.41157 6.41903 6.46006 6.61694 6.85349 6.96435 7.01963 7.15378 7.29230 7.50143 7.61505 7.82455 8.15847 8.37334 8.66430 9.06182 9.55984 10.28314 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.014766 B = 0.008459 C = 0.005870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.848013 B = 3309.208217 C = 4769.257889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.099 3.901 3 N -0.488 5.488 4 C -0.076 4.076 5 S 0.261 5.739 6 C -0.254 4.254 7 C 0.558 3.442 8 O -0.570 6.570 9 N -0.405 5.405 10 C -0.356 4.356 11 H 0.101 0.899 12 C 0.070 3.930 13 N -0.825 5.825 14 Si 0.908 3.092 15 H -0.257 1.257 16 H -0.271 1.271 17 H -0.273 1.273 18 C 0.200 3.800 19 C -0.065 4.065 20 C -0.126 4.126 21 C -0.144 4.144 22 C -0.127 4.127 23 C -0.127 4.127 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.092 0.908 27 H 0.181 0.819 28 H 0.279 0.721 29 H 0.116 0.884 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.113 0.961 -2.435 2.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.040 4.040 3 N -0.203 5.203 4 C -0.368 4.368 5 S 0.523 5.477 6 C -0.379 4.379 7 C 0.349 3.651 8 O -0.455 6.455 9 N -0.121 5.121 10 C -0.489 4.489 11 H 0.117 0.883 12 C -0.144 4.144 13 N -0.455 5.455 14 Si 0.732 3.268 15 H -0.181 1.181 16 H -0.196 1.196 17 H -0.198 1.198 18 C 0.110 3.890 19 C -0.084 4.084 20 C -0.144 4.144 21 C -0.162 4.162 22 C -0.145 4.145 23 C -0.147 4.147 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.110 0.890 27 H 0.198 0.802 28 H 0.089 0.911 29 H 0.134 0.866 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.129 0.871 33 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.421 0.823 -2.223 2.764 hybrid contribution 0.414 0.055 0.116 0.433 sum 1.835 0.879 -2.107 2.929 Atomic orbital electron populations 1.20396 0.87139 1.03059 1.02689 1.20783 0.97933 0.85571 0.99753 1.66080 1.05684 1.32034 1.16468 1.29334 0.95862 1.06983 1.04634 1.85041 1.05476 0.94960 1.62242 1.25644 0.96482 0.98712 1.17046 1.17186 0.85873 0.82924 0.79162 1.90679 1.15389 1.85074 1.54340 1.40728 1.05900 1.01978 1.63462 1.19288 0.80173 1.24543 1.24852 0.88275 1.25625 1.00875 0.94365 0.93559 1.69861 1.36795 1.25682 1.13208 0.86126 0.81812 0.79317 0.79553 1.18051 1.19632 1.19772 1.17518 0.93398 0.85917 0.92196 1.21021 0.95848 0.94037 0.97518 1.20851 1.01311 0.94996 0.97278 1.20864 1.02446 0.99311 0.93571 1.20739 1.00732 0.95058 0.98016 1.21108 1.01302 0.95173 0.97090 0.91236 0.92052 0.88987 0.80205 0.91080 0.86634 0.87160 0.87378 0.87120 0.86786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.37 9.64 36.01 0.35 -1.02 16 2 C 0.10 2.06 6.84 -83.49 -0.57 1.49 16 3 N -0.49 -9.56 10.49 -11.29 -0.12 -9.68 16 4 C -0.08 -1.30 12.21 51.73 0.63 -0.67 16 5 S 0.26 4.89 18.61 -107.50 -2.00 2.89 16 6 C -0.25 -5.61 6.34 -36.77 -0.23 -5.84 16 7 C 0.56 13.67 7.48 -12.93 -0.10 13.57 16 8 O -0.57 -14.68 14.13 5.17 0.07 -14.61 16 9 N -0.40 -9.85 2.49 -60.40 -0.15 -10.00 16 10 C -0.36 -8.33 6.72 -15.01 -0.10 -8.43 16 11 H 0.10 2.21 5.41 -33.34 -0.18 2.03 16 12 C 0.07 1.62 5.27 -17.47 -0.09 1.52 16 13 N -0.83 -20.15 11.67 55.50 0.65 -19.50 16 14 Si 0.91 17.68 29.57 -169.99 -5.03 12.65 16 15 H -0.26 -4.76 7.11 56.52 0.40 -4.35 16 16 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 17 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 18 C 0.20 4.73 3.63 -83.72 -0.30 4.43 16 19 C -0.06 -1.48 8.40 -39.37 -0.33 -1.81 16 20 C -0.13 -2.44 10.04 -39.61 -0.40 -2.84 16 21 C -0.14 -2.56 10.04 -39.52 -0.40 -2.95 16 22 C -0.13 -2.33 10.04 -39.61 -0.40 -2.72 16 23 C -0.13 -2.70 9.86 -39.36 -0.39 -3.09 16 24 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.09 1.82 6.23 -51.93 -0.32 1.50 16 27 H 0.18 2.36 8.06 -52.49 -0.42 1.94 16 28 H 0.28 6.41 8.32 -40.82 -0.34 6.07 16 29 H 0.12 2.81 8.06 -52.49 -0.42 2.39 16 30 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 31 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 32 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.11 2.30 8.06 -52.48 -0.42 1.88 16 LS Contribution 299.38 15.07 4.51 4.51 Total: -1.00 -27.83 299.38 -7.41 -35.25 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -3.02 Total: 6.85 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -2.33 Total: -8.36 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.38 Total: -39.17 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.07 Total: -14.61 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.65 kcal Atomic # 16 Polarization: 4.89 SS G_CDS: -2.00 Total: 2.89 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.83 -7.41 -35.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058263830.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.546 kcal (2) G-P(sol) polarization free energy of solvation -27.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds