Wall clock time and date at job start Tue Mar 31 2020 03:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30934 * 123.04099 * 2 1 4 4 C 1.29379 * 117.47055 * 180.02562 * 3 2 1 5 5 S 1.70923 * 110.59900 * 359.75895 * 4 3 2 6 6 C 1.36815 * 123.04209 * 180.02562 * 2 1 3 7 7 C 1.46509 * 126.18073 * 359.92959 * 6 2 1 8 8 O 1.21720 * 119.99922 * 353.26401 * 7 6 2 9 9 N 1.34774 * 119.99575 * 173.27246 * 7 6 2 10 10 C 1.36930 * 120.00352 * 3.57215 * 9 7 6 11 11 H 1.08001 * 120.00304 * 310.33944 * 10 9 7 12 12 C 1.38943 * 120.00433 * 130.34464 * 10 9 7 13 13 N 1.31413 * 119.99506 * 350.40088 * 12 10 9 14 14 Si 1.86799 * 120.00416 * 170.39385 * 12 10 9 15 15 H 1.48498 * 109.46703 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46742 * 120.00070 * 14 12 10 17 17 H 1.48501 * 109.47153 * 240.00005 * 14 12 10 18 18 C 1.39686 * 119.99443 * 183.84327 * 9 7 6 19 19 C 1.38984 * 120.08517 * 289.18877 * 18 9 7 20 20 C 1.38072 * 119.92118 * 179.74776 * 19 18 9 21 21 C 1.38320 * 120.07937 * 0.52402 * 20 19 18 22 22 C 1.38318 * 120.15854 * 359.72851 * 21 20 19 23 23 C 1.38068 * 120.08230 * 0.02562 * 22 21 20 24 24 H 1.09003 * 109.47024 * 269.95851 * 1 2 3 25 25 H 1.08995 * 109.47360 * 29.95966 * 1 2 3 26 26 H 1.09005 * 109.46883 * 149.95810 * 1 2 3 27 27 H 1.07997 * 124.70031 * 180.02562 * 4 3 2 28 28 H 0.97003 * 120.00070 * 185.02011 * 13 12 10 29 29 H 1.08000 * 120.03896 * 359.97438 * 19 18 9 30 30 H 1.08000 * 119.96654 * 180.25592 * 20 19 18 31 31 H 1.07995 * 119.92073 * 179.70609 * 21 20 19 32 32 H 1.08000 * 119.95772 * 179.97438 * 22 21 20 33 33 H 1.08003 * 120.03993 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2209 1.0976 0.0000 4 6 3.5086 0.9720 -0.0005 5 16 3.9518 -0.6787 0.0056 6 6 2.2530 -1.1469 -0.0005 7 6 1.7333 -2.5167 0.0003 8 8 0.5387 -2.7143 0.1252 9 7 2.5779 -3.5579 -0.1370 10 6 3.9281 -3.3401 -0.2039 11 1 4.3228 -2.6009 -0.8853 12 6 4.7906 -4.0700 0.6047 13 7 4.3081 -4.8293 1.5627 14 14 6.6357 -3.9722 0.3302 15 1 6.9196 -3.0541 -0.8019 16 1 7.2924 -3.4596 1.5594 17 1 7.1616 -5.3248 0.0152 18 6 2.0755 -4.8588 -0.2169 19 6 1.5234 -5.4627 0.9066 20 6 1.0230 -6.7468 0.8225 21 6 1.0806 -7.4362 -0.3753 22 6 1.6341 -6.8404 -1.4941 23 6 2.1318 -5.5547 -1.4188 24 1 -0.3633 -0.0007 1.0277 25 1 -0.3634 0.8903 -0.5132 26 1 -0.3633 -0.8897 -0.5145 27 1 4.2067 1.7960 -0.0002 28 1 4.9111 -5.2816 2.1732 29 1 1.4825 -4.9267 1.8433 30 1 0.5901 -7.2152 1.6940 31 1 0.6928 -8.4422 -0.4369 32 1 1.6778 -7.3818 -2.4276 33 1 2.5643 -5.0903 -2.2927 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058263830.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:00 Heat of formation + Delta-G solvation = 26.825934 kcal Electronic energy + Delta-G solvation = -20440.975157 eV Core-core repulsion = 17365.099279 eV Total energy + Delta-G solvation = -3075.875878 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.35467 -40.37738 -38.87290 -36.69830 -33.81585 -32.65302 -31.63646 -30.95271 -28.84031 -27.06741 -25.69205 -23.99985 -23.26279 -21.82807 -20.60300 -19.23795 -18.91304 -17.59284 -17.39088 -16.73016 -16.50948 -16.20365 -15.88185 -15.59924 -14.86020 -14.63482 -14.48975 -14.33468 -14.13575 -13.52219 -13.48922 -13.39225 -13.27297 -13.03582 -12.89340 -12.33390 -12.05333 -12.01684 -11.92687 -11.30551 -10.68877 -10.40038 -10.22936 -9.87077 -9.64868 -9.48907 -9.21707 -8.38827 -6.39695 -0.47965 0.63091 0.64168 0.73205 1.09144 1.40276 1.44181 1.56141 1.67763 2.17104 2.39505 2.77201 2.92171 3.17045 3.44381 4.16588 4.20897 4.24994 4.29459 4.38304 4.42509 4.72344 4.74890 4.85340 4.91090 4.95963 5.02425 5.23892 5.28913 5.45927 5.61424 5.72851 5.84871 6.01464 6.14543 6.45599 6.83484 6.90293 7.29759 7.79873 8.57139 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.014766 B = 0.008459 C = 0.005870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.848013 B = 3309.208217 C = 4769.257889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.100 3.900 3 N -0.503 5.503 4 C -0.044 4.044 5 S 0.276 5.724 6 C -0.301 4.301 7 C 0.543 3.457 8 O -0.602 6.602 9 N -0.411 5.411 10 C -0.370 4.370 11 H 0.108 0.892 12 C 0.034 3.966 13 N -0.860 5.860 14 Si 0.962 3.038 15 H -0.239 1.239 16 H -0.266 1.266 17 H -0.277 1.277 18 C 0.168 3.832 19 C -0.092 4.092 20 C -0.128 4.128 21 C -0.135 4.135 22 C -0.118 4.118 23 C -0.148 4.148 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.230 0.770 28 H 0.278 0.722 29 H 0.082 0.918 30 H 0.135 0.865 31 H 0.153 0.847 32 H 0.151 0.849 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.304 1.134 -3.465 4.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.040 4.040 3 N -0.219 5.219 4 C -0.336 4.336 5 S 0.538 5.462 6 C -0.425 4.425 7 C 0.334 3.666 8 O -0.489 6.489 9 N -0.126 5.126 10 C -0.501 4.501 11 H 0.124 0.876 12 C -0.177 4.177 13 N -0.491 5.491 14 Si 0.783 3.217 15 H -0.161 1.161 16 H -0.191 1.191 17 H -0.202 1.202 18 C 0.078 3.922 19 C -0.112 4.112 20 C -0.146 4.146 21 C -0.153 4.153 22 C -0.137 4.137 23 C -0.168 4.168 24 H 0.091 0.909 25 H 0.104 0.896 26 H 0.092 0.908 27 H 0.246 0.754 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.153 0.847 31 H 0.171 0.829 32 H 0.168 0.832 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.624 0.973 -3.265 4.300 hybrid contribution 0.001 0.068 0.423 0.428 sum 2.625 1.042 -2.842 4.007 Atomic orbital electron populations 1.20371 0.86340 1.03267 1.02952 1.21129 0.98888 0.85613 0.98345 1.66188 1.06562 1.31147 1.17962 1.29992 0.95677 1.07172 1.00785 1.84723 1.03450 0.95811 1.62263 1.25595 0.98801 0.97982 1.20145 1.17616 0.85798 0.84112 0.79041 1.90619 1.16462 1.85851 1.55964 1.40939 1.06336 1.02381 1.62968 1.19582 0.80042 1.25287 1.25159 0.87557 1.26383 1.04566 0.93737 0.92979 1.69998 1.38012 1.26852 1.14250 0.85318 0.76927 0.79340 0.80147 1.16135 1.19101 1.20210 1.17874 0.94802 0.86156 0.93384 1.20927 0.98280 0.95706 0.96275 1.21196 1.00414 0.93726 0.99271 1.21346 1.00855 1.00843 0.92251 1.21210 0.98709 0.93845 0.99909 1.21310 1.02487 0.96653 0.96353 0.90877 0.89617 0.90838 0.75387 0.91213 0.89950 0.84690 0.82923 0.83180 0.86716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.63 9.64 71.24 0.69 -1.95 16 2 C 0.10 4.16 6.84 42.36 0.29 4.45 16 3 N -0.50 -18.74 10.49 -189.62 -1.99 -20.73 16 4 C -0.04 -1.37 12.21 130.60 1.59 0.22 16 5 S 0.28 10.03 18.61 -56.49 -1.05 8.98 16 6 C -0.30 -13.54 6.34 24.09 0.15 -13.38 16 7 C 0.54 27.93 7.48 86.40 0.65 28.58 16 8 O -0.60 -32.94 14.13 -4.41 -0.06 -33.01 16 9 N -0.41 -20.89 2.49 -463.23 -1.16 -22.04 16 10 C -0.37 -17.67 6.72 84.07 0.57 -17.11 16 11 H 0.11 4.78 5.41 -15.09 -0.08 4.70 16 12 C 0.03 1.58 5.27 84.92 0.45 2.02 16 13 N -0.86 -43.39 11.67 21.66 0.25 -43.14 16 14 Si 0.96 35.74 29.57 68.60 2.03 37.77 16 15 H -0.24 -8.07 7.11 99.48 0.71 -7.37 16 16 H -0.27 -9.60 7.11 99.48 0.71 -8.89 16 17 H -0.28 -10.40 7.11 99.48 0.71 -9.70 16 18 C 0.17 8.25 3.63 38.25 0.14 8.39 16 19 C -0.09 -4.40 8.40 22.41 0.19 -4.22 16 20 C -0.13 -4.92 10.04 22.25 0.22 -4.69 16 21 C -0.14 -4.47 10.04 22.31 0.22 -4.25 16 22 C -0.12 -4.11 10.04 22.25 0.22 -3.89 16 23 C -0.15 -6.37 9.86 22.41 0.22 -6.15 16 24 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 25 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 26 H 0.07 3.03 6.23 -2.38 -0.01 3.02 16 27 H 0.23 4.79 8.06 -2.91 -0.02 4.77 16 28 H 0.28 13.21 8.32 -92.71 -0.77 12.44 16 29 H 0.08 4.35 8.06 -2.91 -0.02 4.33 16 30 H 0.14 4.38 8.06 -2.91 -0.02 4.35 16 31 H 0.15 3.71 8.06 -2.91 -0.02 3.68 16 32 H 0.15 3.97 8.06 -2.91 -0.02 3.94 16 33 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 Total: -1.00 -63.54 299.38 4.70 -58.84 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: 1.07 Total: 25.30 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: 5.60 Total: -11.96 kcal Atomic # 7 Polarization: -83.03 SS G_CDS: -2.89 Total: -85.92 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -0.06 Total: -33.01 kcal Atomic # 14 Polarization: 35.74 SS G_CDS: 2.03 Total: 37.77 kcal Atomic # 16 Polarization: 10.03 SS G_CDS: -1.05 Total: 8.98 kcal Total: -63.54 4.70 -58.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058263830.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.664 kcal (2) G-P(sol) polarization free energy of solvation -63.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds