Wall clock time and date at job start Tue Mar 31 2020 02:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86801 * 120.00058 * 2 1 4 4 H 1.48498 * 109.47050 * 275.23049 * 3 2 1 5 5 H 1.48506 * 109.46789 * 35.22468 * 3 2 1 6 6 H 1.48495 * 109.47405 * 155.22467 * 3 2 1 7 7 C 1.38950 * 120.00243 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99625 * 338.63561 * 7 2 1 9 9 N 1.37097 * 120.00231 * 158.63151 * 7 2 1 10 10 C 1.46500 * 120.00091 * 317.92234 * 9 7 2 11 11 C 1.50703 * 109.47007 * 264.14112 * 10 9 7 12 12 C 1.38234 * 119.99737 * 268.70816 * 11 10 9 13 13 C 1.38236 * 119.99588 * 179.76475 * 12 11 10 14 14 C 1.38241 * 120.00347 * 0.51041 * 13 12 11 15 15 C 1.38234 * 119.99517 * 359.74229 * 14 13 12 16 16 C 1.38237 * 120.00404 * 0.02562 * 15 14 13 17 17 C 1.34772 * 119.99792 * 137.92063 * 9 7 2 18 18 O 1.21294 * 119.99674 * 180.02562 * 17 9 7 19 19 C 1.50700 * 120.00386 * 359.97438 * 17 9 7 20 20 C 1.52993 * 109.47406 * 180.02562 * 19 17 9 21 21 C 1.54265 * 110.03283 * 292.91113 * 20 19 17 22 22 C 1.54973 * 104.15931 * 217.13479 * 21 20 19 23 23 C 1.54890 * 102.77684 * 37.88828 * 22 21 20 24 24 C 1.53875 * 110.03407 * 175.69167 * 20 19 17 25 25 H 0.96996 * 120.00417 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46994 * 24.13816 * 10 9 7 27 27 H 1.08991 * 109.46965 * 144.14116 * 10 9 7 28 28 H 1.07992 * 120.00365 * 359.97438 * 12 11 10 29 29 H 1.08006 * 119.99898 * 180.23145 * 13 12 11 30 30 H 1.07992 * 120.00237 * 179.72510 * 14 13 12 31 31 H 1.08003 * 119.99844 * 179.97438 * 15 14 13 32 32 H 1.07997 * 120.00369 * 179.97438 * 16 15 14 33 33 H 1.08997 * 109.46839 * 300.00365 * 19 17 9 34 34 H 1.08997 * 109.46834 * 59.99898 * 19 17 9 35 35 H 1.09004 * 110.01670 * 54.29961 * 20 19 17 36 36 H 1.08997 * 110.48793 * 335.77922 * 21 20 19 37 37 H 1.08995 * 110.49089 * 98.42423 * 21 20 19 38 38 H 1.08992 * 110.72221 * 279.57477 * 22 21 20 39 39 H 1.09003 * 110.91854 * 156.28983 * 22 21 20 40 40 H 1.08994 * 110.48531 * 203.40446 * 23 22 21 41 41 H 1.09002 * 110.60119 * 80.81317 * 23 22 21 42 42 H 1.09005 * 110.03458 * 238.57017 * 24 20 19 43 43 H 1.08998 * 110.03455 * 359.95277 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.3851 2.1102 -1.3942 5 1 1.5050 2.6183 0.8076 6 1 3.5965 1.4109 0.5867 7 6 2.0089 -1.2033 -0.0005 8 1 1.5245 -2.1067 0.3398 9 7 3.3092 -1.2439 -0.4332 10 6 3.7076 -0.4946 -1.6273 11 6 3.6775 -1.4072 -2.8262 12 6 4.8148 -2.1006 -3.1957 13 6 4.7857 -2.9414 -4.2926 14 6 3.6224 -3.0807 -5.0263 15 6 2.4866 -2.3832 -4.6598 16 6 2.5142 -1.5460 -3.5601 17 6 4.2208 -1.9732 0.2402 18 8 5.3714 -2.0087 -0.1423 19 6 3.8112 -2.7435 1.4689 20 6 5.0258 -3.4792 2.0382 21 6 5.4806 -4.5832 1.0613 22 6 5.9247 -5.7464 1.9840 23 6 4.8843 -5.6910 3.1301 24 6 4.6472 -4.1830 3.3532 25 1 -0.4850 0.8400 0.0004 26 1 3.0166 0.3338 -1.7838 27 1 4.7167 -0.1055 -1.4921 28 1 5.7250 -1.9881 -2.6255 29 1 5.6733 -3.4861 -4.5791 30 1 3.6010 -3.7341 -5.8858 31 1 1.5778 -2.4916 -5.2332 32 1 1.6269 -1.0008 -3.2740 33 1 3.4213 -2.0534 2.2171 34 1 3.0394 -3.4662 1.2041 35 1 5.8403 -2.7760 2.2121 36 1 4.6518 -4.8956 0.4261 37 1 6.3170 -4.2355 0.4551 38 1 6.9304 -5.5727 2.3666 39 1 5.8717 -6.7008 1.4601 40 1 5.2860 -6.1515 4.0326 41 1 3.9584 -6.1826 2.8317 42 1 5.2785 -3.8219 4.1651 43 1 3.5984 -3.9997 3.5862 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058289593.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:36 Heat of formation + Delta-G solvation = -25.223724 kcal Electronic energy + Delta-G solvation = -23311.739919 eV Core-core repulsion = 20127.946227 eV Total energy + Delta-G solvation = -3183.793692 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.43353 -38.44001 -37.27296 -34.89073 -32.25457 -31.36255 -30.41357 -30.33448 -28.31917 -26.43704 -25.24109 -23.97848 -21.97454 -20.97852 -20.40019 -19.33703 -18.82788 -17.16393 -16.47559 -15.82239 -15.36869 -15.23374 -14.79697 -14.56713 -14.33390 -14.05981 -13.61789 -13.10628 -13.01030 -12.87732 -12.66440 -12.33925 -12.28092 -12.00097 -11.48337 -11.27409 -11.05030 -10.89674 -10.81831 -10.65776 -10.63377 -10.45714 -10.38893 -10.24820 -10.08100 -10.06290 -9.90885 -9.21731 -8.64377 -8.37748 -8.13980 -7.76881 -6.52379 -4.14428 1.85174 1.95028 3.02275 3.18613 3.27247 3.77913 4.08757 4.18499 4.63604 4.88649 4.97085 4.98938 5.11982 5.37262 5.39292 5.49709 5.68484 5.72127 5.75105 5.82057 5.90316 5.92180 5.96041 6.02069 6.07544 6.11502 6.18020 6.21816 6.30341 6.36682 6.41609 6.51225 6.53789 6.59836 6.62823 6.67109 6.79256 6.95139 6.98676 6.99824 7.28909 7.35126 7.55060 8.07632 8.22894 8.94559 9.34021 9.69947 10.58133 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.011601 B = 0.007108 C = 0.005016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.986733 B = 3938.219461 C = 5580.983476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.071 3.929 3 Si 0.866 3.134 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.341 4.341 8 H 0.101 0.899 9 N -0.463 5.463 10 C 0.138 3.862 11 C -0.083 4.083 12 C -0.098 4.098 13 C -0.133 4.133 14 C -0.130 4.130 15 C -0.130 4.130 16 C -0.094 4.094 17 C 0.487 3.513 18 O -0.592 6.592 19 C -0.111 4.111 20 C -0.075 4.075 21 C -0.107 4.107 22 C -0.127 4.127 23 C -0.123 4.123 24 C -0.123 4.123 25 H 0.275 0.725 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.127 0.873 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.124 0.876 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.397 -5.947 -1.073 8.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.137 4.137 3 Si 0.693 3.307 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.184 1.184 7 C -0.468 4.468 8 H 0.118 0.882 9 N -0.184 5.184 10 C 0.015 3.985 11 C -0.085 4.085 12 C -0.116 4.116 13 C -0.151 4.151 14 C -0.149 4.149 15 C -0.149 4.149 16 C -0.112 4.112 17 C 0.278 3.722 18 O -0.476 6.476 19 C -0.151 4.151 20 C -0.094 4.094 21 C -0.145 4.145 22 C -0.165 4.165 23 C -0.161 4.161 24 C -0.160 4.160 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.145 0.855 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.133 0.867 32 H 0.142 0.858 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.750 -5.829 -1.239 9.004 hybrid contribution -0.052 0.932 -0.022 0.934 sum 6.699 -4.896 -1.262 8.393 Atomic orbital electron populations 1.69768 1.06272 1.28175 1.45023 1.25365 0.94984 0.98371 0.94958 0.87055 0.81424 0.83805 0.78445 1.20000 1.21187 1.18392 1.19011 0.85903 0.96252 1.45615 0.88161 1.43731 1.09269 1.44607 1.20771 1.20593 1.00537 0.93257 0.84083 1.20318 0.93468 0.98760 0.95936 1.21227 0.98681 0.95756 0.95948 1.21045 0.97841 0.99724 0.96524 1.21011 0.93577 1.00285 0.99986 1.21057 0.97968 0.97987 0.97845 1.21168 0.97769 0.98082 0.94198 1.20567 0.84540 0.82143 0.84967 1.90494 1.19396 1.67253 1.70472 1.21518 0.97837 0.99225 0.96481 1.21526 0.97410 0.96778 0.93704 1.22334 1.01147 0.93929 0.97076 1.22548 0.98487 0.98638 0.96831 1.22339 0.99066 0.96574 0.98107 1.22244 1.01435 0.94855 0.97483 0.91491 0.90650 0.91014 0.85533 0.86879 0.86994 0.86698 0.85766 0.89523 0.90022 0.90918 0.92260 0.91068 0.92056 0.92305 0.92435 0.91893 0.92314 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.92 13.96 55.50 0.77 -22.14 16 2 C 0.07 1.81 5.25 -17.47 -0.09 1.72 16 3 Si 0.87 19.91 25.23 -169.99 -4.29 15.62 16 4 H -0.27 -6.08 6.73 56.52 0.38 -5.70 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.26 -6.10 7.11 56.52 0.40 -5.69 16 7 C -0.34 -8.57 8.93 -14.93 -0.13 -8.70 16 8 H 0.10 2.67 7.39 -52.48 -0.39 2.29 16 9 N -0.46 -10.85 2.08 -116.09 -0.24 -11.10 16 10 C 0.14 3.05 4.08 -5.19 -0.02 3.03 16 11 C -0.08 -1.71 5.41 -104.62 -0.57 -2.27 16 12 C -0.10 -1.85 9.32 -39.58 -0.37 -2.22 16 13 C -0.13 -2.19 10.05 -39.58 -0.40 -2.58 16 14 C -0.13 -2.03 10.05 -39.58 -0.40 -2.42 16 15 C -0.13 -2.18 10.05 -39.58 -0.40 -2.58 16 16 C -0.09 -1.82 9.71 -39.58 -0.38 -2.21 16 17 C 0.49 10.91 7.36 -10.99 -0.08 10.83 16 18 O -0.59 -13.71 13.28 5.55 0.07 -13.63 16 19 C -0.11 -2.12 3.56 -27.89 -0.10 -2.22 16 20 C -0.08 -1.25 2.55 -89.51 -0.23 -1.47 16 21 C -0.11 -1.73 5.40 -25.03 -0.14 -1.86 16 22 C -0.13 -1.66 6.91 -24.69 -0.17 -1.83 16 23 C -0.12 -1.53 6.83 -25.07 -0.17 -1.70 16 24 C -0.12 -1.68 6.46 -25.61 -0.17 -1.85 16 25 H 0.27 6.89 8.31 -40.82 -0.34 6.56 16 26 H 0.08 1.70 4.08 -51.93 -0.21 1.49 16 27 H 0.07 1.56 7.54 -51.93 -0.39 1.17 16 28 H 0.13 2.45 7.26 -52.49 -0.38 2.07 16 29 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 30 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 31 H 0.11 1.64 8.06 -52.48 -0.42 1.21 16 32 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 33 H 0.09 1.66 8.10 -51.93 -0.42 1.24 16 34 H 0.08 1.57 7.59 -51.93 -0.39 1.17 16 35 H 0.07 1.28 7.95 -51.93 -0.41 0.87 16 36 H 0.06 1.02 7.77 -51.93 -0.40 0.61 16 37 H 0.07 1.24 7.63 -51.93 -0.40 0.85 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.90 7.67 -51.93 -0.40 0.50 16 LS Contribution 341.62 15.07 5.15 5.15 Total: -1.00 -27.16 341.62 -9.10 -36.26 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -6.76 Total: 8.20 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -3.81 Total: -18.35 kcal Atomic # 7 Polarization: -33.77 SS G_CDS: 0.53 Total: -33.24 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: 0.07 Total: -13.63 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.29 Total: 15.62 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -27.16 -9.10 -36.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058289593.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.038 kcal (2) G-P(sol) polarization free energy of solvation -27.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds