Wall clock time and date at job start Tue Mar 31 2020 02:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86801 * 120.00058 * 2 1 4 4 H 1.48498 * 109.47050 * 275.23049 * 3 2 1 5 5 H 1.48506 * 109.46789 * 35.22468 * 3 2 1 6 6 H 1.48495 * 109.47405 * 155.22467 * 3 2 1 7 7 C 1.38950 * 120.00243 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99625 * 338.63561 * 7 2 1 9 9 N 1.37097 * 120.00231 * 158.63151 * 7 2 1 10 10 C 1.46500 * 120.00091 * 317.92234 * 9 7 2 11 11 C 1.50703 * 109.47007 * 264.14112 * 10 9 7 12 12 C 1.38234 * 119.99737 * 268.70816 * 11 10 9 13 13 C 1.38236 * 119.99588 * 179.76475 * 12 11 10 14 14 C 1.38241 * 120.00347 * 0.51041 * 13 12 11 15 15 C 1.38234 * 119.99517 * 359.74229 * 14 13 12 16 16 C 1.38237 * 120.00404 * 0.02562 * 15 14 13 17 17 C 1.34772 * 119.99792 * 137.92063 * 9 7 2 18 18 O 1.21294 * 119.99674 * 180.02562 * 17 9 7 19 19 C 1.50700 * 120.00386 * 359.97438 * 17 9 7 20 20 C 1.52993 * 109.47406 * 180.02562 * 19 17 9 21 21 C 1.54265 * 110.03283 * 292.91113 * 20 19 17 22 22 C 1.54973 * 104.15931 * 217.13479 * 21 20 19 23 23 C 1.54890 * 102.77684 * 37.88828 * 22 21 20 24 24 C 1.53875 * 110.03407 * 175.69167 * 20 19 17 25 25 H 0.96996 * 120.00417 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46994 * 24.13816 * 10 9 7 27 27 H 1.08991 * 109.46965 * 144.14116 * 10 9 7 28 28 H 1.07992 * 120.00365 * 359.97438 * 12 11 10 29 29 H 1.08006 * 119.99898 * 180.23145 * 13 12 11 30 30 H 1.07992 * 120.00237 * 179.72510 * 14 13 12 31 31 H 1.08003 * 119.99844 * 179.97438 * 15 14 13 32 32 H 1.07997 * 120.00369 * 179.97438 * 16 15 14 33 33 H 1.08997 * 109.46839 * 300.00365 * 19 17 9 34 34 H 1.08997 * 109.46834 * 59.99898 * 19 17 9 35 35 H 1.09004 * 110.01670 * 54.29961 * 20 19 17 36 36 H 1.08997 * 110.48793 * 335.77922 * 21 20 19 37 37 H 1.08995 * 110.49089 * 98.42423 * 21 20 19 38 38 H 1.08992 * 110.72221 * 279.57477 * 22 21 20 39 39 H 1.09003 * 110.91854 * 156.28983 * 22 21 20 40 40 H 1.08994 * 110.48531 * 203.40446 * 23 22 21 41 41 H 1.09002 * 110.60119 * 80.81317 * 23 22 21 42 42 H 1.09005 * 110.03458 * 238.57017 * 24 20 19 43 43 H 1.08998 * 110.03455 * 359.95277 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.3851 2.1102 -1.3942 5 1 1.5050 2.6183 0.8076 6 1 3.5965 1.4109 0.5867 7 6 2.0089 -1.2033 -0.0005 8 1 1.5245 -2.1067 0.3398 9 7 3.3092 -1.2439 -0.4332 10 6 3.7076 -0.4946 -1.6273 11 6 3.6775 -1.4072 -2.8262 12 6 4.8148 -2.1006 -3.1957 13 6 4.7857 -2.9414 -4.2926 14 6 3.6224 -3.0807 -5.0263 15 6 2.4866 -2.3832 -4.6598 16 6 2.5142 -1.5460 -3.5601 17 6 4.2208 -1.9732 0.2402 18 8 5.3714 -2.0087 -0.1423 19 6 3.8112 -2.7435 1.4689 20 6 5.0258 -3.4792 2.0382 21 6 5.4806 -4.5832 1.0613 22 6 5.9247 -5.7464 1.9840 23 6 4.8843 -5.6910 3.1301 24 6 4.6472 -4.1830 3.3532 25 1 -0.4850 0.8400 0.0004 26 1 3.0166 0.3338 -1.7838 27 1 4.7167 -0.1055 -1.4921 28 1 5.7250 -1.9881 -2.6255 29 1 5.6733 -3.4861 -4.5791 30 1 3.6010 -3.7341 -5.8858 31 1 1.5778 -2.4916 -5.2332 32 1 1.6269 -1.0008 -3.2740 33 1 3.4213 -2.0534 2.2171 34 1 3.0394 -3.4662 1.2041 35 1 5.8403 -2.7760 2.2121 36 1 4.6518 -4.8956 0.4261 37 1 6.3170 -4.2355 0.4551 38 1 6.9304 -5.5727 2.3666 39 1 5.8717 -6.7008 1.4601 40 1 5.2860 -6.1515 4.0326 41 1 3.9584 -6.1826 2.8317 42 1 5.2785 -3.8219 4.1651 43 1 3.5984 -3.9997 3.5862 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058289593.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:34 Heat of formation + Delta-G solvation = -36.969397 kcal Electronic energy + Delta-G solvation = -23312.249250 eV Core-core repulsion = 20127.946227 eV Total energy + Delta-G solvation = -3184.303022 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.10386 -39.84787 -38.64679 -36.71372 -34.13253 -32.95013 -31.82900 -31.72743 -29.47501 -27.95370 -27.07693 -25.56385 -23.38176 -22.43262 -21.51839 -20.95024 -20.38264 -18.89309 -18.11105 -17.39136 -17.15256 -16.62887 -16.32833 -15.90058 -15.83313 -15.55422 -15.31748 -14.69733 -14.36853 -14.25785 -14.15110 -13.99847 -13.82969 -13.47408 -13.23984 -12.87664 -12.77823 -12.45947 -12.03502 -12.01190 -11.99727 -11.88340 -11.75930 -11.72767 -11.52600 -11.44917 -11.21724 -11.12106 -10.41988 -9.78057 -9.66821 -9.61754 -8.53051 -6.16259 0.44072 0.54635 1.16206 1.28273 1.38940 1.95637 2.16236 2.58387 2.96124 3.08403 3.77844 3.81963 3.89308 3.91781 3.98313 4.18495 4.27599 4.32662 4.38861 4.45986 4.53349 4.57620 4.63969 4.73191 4.73990 4.78096 4.82539 4.92694 5.01203 5.05920 5.13133 5.16151 5.20822 5.22058 5.29853 5.42932 5.47462 5.53680 5.61284 5.62121 5.62466 5.81899 6.08484 6.16718 6.25904 6.96791 7.43859 7.82434 8.61020 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.011601 B = 0.007108 C = 0.005016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.986733 B = 3938.219461 C = 5580.983476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.040 3.960 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.335 4.335 8 H 0.078 0.922 9 N -0.473 5.473 10 C 0.138 3.862 11 C -0.107 4.107 12 C -0.112 4.112 13 C -0.128 4.128 14 C -0.119 4.119 15 C -0.128 4.128 16 C -0.115 4.115 17 C 0.480 3.520 18 O -0.601 6.601 19 C -0.105 4.105 20 C -0.073 4.073 21 C -0.107 4.107 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.119 4.119 25 H 0.279 0.721 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.114 0.886 29 H 0.144 0.856 30 H 0.154 0.846 31 H 0.142 0.858 32 H 0.105 0.895 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.043 0.957 37 H 0.051 0.949 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.353 -7.497 -1.709 10.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.165 4.165 3 Si 0.738 3.262 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.462 4.462 8 H 0.096 0.904 9 N -0.194 5.194 10 C 0.015 3.985 11 C -0.108 4.108 12 C -0.130 4.130 13 C -0.146 4.146 14 C -0.136 4.136 15 C -0.146 4.146 16 C -0.134 4.134 17 C 0.271 3.729 18 O -0.486 6.486 19 C -0.145 4.145 20 C -0.092 4.092 21 C -0.145 4.145 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.157 4.157 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.132 0.868 29 H 0.162 0.838 30 H 0.172 0.828 31 H 0.160 0.840 32 H 0.123 0.877 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.713 -7.377 -1.880 10.838 hybrid contribution -0.312 1.353 0.087 1.391 sum 7.401 -6.024 -1.794 9.710 Atomic orbital electron populations 1.69818 1.07274 1.29058 1.46593 1.25774 0.95375 1.00514 0.94824 0.86313 0.79816 0.81142 0.78896 1.18916 1.20511 1.19385 1.18807 0.86455 0.95540 1.45429 0.90448 1.43841 1.08793 1.45128 1.21626 1.20557 0.99724 0.93520 0.84678 1.20220 0.94742 0.99816 0.96039 1.21208 0.97683 0.96883 0.97265 1.21412 0.99522 0.98531 0.95147 1.21469 0.92282 0.99463 1.00432 1.21388 0.99727 0.96729 0.96723 1.21143 0.96813 0.99569 0.95828 1.21145 0.84345 0.81820 0.85586 1.90477 1.19736 1.67451 1.70905 1.21535 0.99062 0.98894 0.95023 1.21525 0.95622 0.96670 0.95414 1.22266 0.99803 0.95213 0.97198 1.22518 0.99178 0.97681 0.96337 1.22339 0.99038 0.95406 0.98834 1.22226 1.01706 0.95757 0.95993 0.91057 0.91557 0.91495 0.86772 0.83787 0.82795 0.83979 0.87661 0.89803 0.90349 0.92218 0.93856 0.93041 0.90993 0.90937 0.89964 0.91786 0.90786 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.69 13.96 21.66 0.30 -48.39 16 2 C 0.04 2.10 5.25 84.93 0.45 2.55 16 3 Si 0.91 41.82 25.23 68.60 1.73 43.55 16 4 H -0.26 -11.54 6.73 99.48 0.67 -10.87 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 6 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.33 -17.46 8.93 84.04 0.75 -16.70 16 8 H 0.08 4.33 7.39 -2.91 -0.02 4.31 16 9 N -0.47 -22.92 2.08 -639.60 -1.33 -24.25 16 10 C 0.14 6.30 4.08 85.63 0.35 6.65 16 11 C -0.11 -4.46 5.41 -19.86 -0.11 -4.57 16 12 C -0.11 -4.21 9.32 22.27 0.21 -4.01 16 13 C -0.13 -3.89 10.05 22.27 0.22 -3.66 16 14 C -0.12 -3.26 10.05 22.27 0.22 -3.04 16 15 C -0.13 -4.01 10.05 22.27 0.22 -3.79 16 16 C -0.11 -4.50 9.71 22.27 0.22 -4.29 16 17 C 0.48 22.16 7.36 87.66 0.65 22.80 16 18 O -0.60 -28.62 13.28 -3.07 -0.04 -28.66 16 19 C -0.11 -4.15 3.56 29.85 0.11 -4.05 16 20 C -0.07 -2.42 2.55 -10.07 -0.03 -2.45 16 21 C -0.11 -3.43 5.40 31.70 0.17 -3.26 16 22 C -0.12 -2.86 6.91 31.91 0.22 -2.64 16 23 C -0.12 -2.63 6.83 31.67 0.22 -2.41 16 24 C -0.12 -3.09 6.46 31.32 0.20 -2.88 16 25 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 26 H 0.07 3.08 4.08 -2.39 -0.01 3.07 16 27 H 0.07 3.03 7.54 -2.39 -0.02 3.02 16 28 H 0.11 4.52 7.26 -2.91 -0.02 4.50 16 29 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 30 H 0.15 3.01 8.06 -2.91 -0.02 2.98 16 31 H 0.14 3.63 8.06 -2.91 -0.02 3.60 16 32 H 0.11 4.44 8.06 -2.91 -0.02 4.41 16 33 H 0.08 3.31 8.10 -2.39 -0.02 3.29 16 34 H 0.08 3.12 7.59 -2.39 -0.02 3.10 16 35 H 0.06 2.12 7.95 -2.38 -0.02 2.10 16 36 H 0.04 1.50 7.77 -2.39 -0.02 1.48 16 37 H 0.05 1.82 7.63 -2.39 -0.02 1.80 16 38 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 43 H 0.06 1.70 7.67 -2.39 -0.02 1.68 16 Total: -1.00 -59.83 341.62 5.67 -54.16 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: 0.94 Total: 29.34 kcal Atomic # 6 Polarization: -29.83 SS G_CDS: 4.07 Total: -25.76 kcal Atomic # 7 Polarization: -71.61 SS G_CDS: -1.03 Total: -72.64 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.04 Total: -28.66 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 1.73 Total: 43.55 kcal Total: -59.83 5.67 -54.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058289593.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.187 kcal (2) G-P(sol) polarization free energy of solvation -59.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds