Wall clock time and date at job start Tue Mar 31 2020 02:56:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.08996 * 109.47167 * 2 1
4 4 C 1.50703 * 109.47315 * 119.99704 * 2 1 3
5 5 H 1.08000 * 120.00489 * 119.99876 * 4 2 1
6 6 C 1.37884 * 120.00055 * 300.00256 * 4 2 1
7 7 N 1.31516 * 119.99472 * 359.97438 * 6 4 2
8 8 Si 1.86795 * 120.00101 * 179.97438 * 6 4 2
9 9 H 1.48501 * 109.47236 * 359.97438 * 8 6 4
10 10 H 1.48499 * 109.46984 * 120.00033 * 8 6 4
11 11 H 1.48506 * 109.46965 * 239.99688 * 8 6 4
12 12 N 1.46499 * 109.47409 * 239.99336 * 2 1 3
13 13 C 1.46497 * 120.00118 * 300.00597 * 12 2 1
14 14 C 1.34778 * 119.99826 * 119.99859 * 12 2 1
15 15 O 1.21283 * 120.00040 * 5.59033 * 14 12 2
16 16 C 1.50701 * 120.00081 * 185.58946 * 14 12 2
17 17 H 1.09001 * 109.24861 * 26.29785 * 16 14 12
18 18 C 1.52732 * 109.25265 * 266.85928 * 16 14 12
19 19 C 1.53317 * 108.39019 * 188.52807 * 18 16 14
20 20 C 1.52725 * 108.41507 * 69.80284 * 19 18 16
21 21 C 1.50625 * 110.59583 * 308.89816 * 20 19 18
22 22 C 1.38915 * 117.75946 * 197.63000 * 21 20 19
23 23 C 1.37933 * 120.54289 * 180.63776 * 22 21 20
24 24 C 1.38259 * 119.77264 * 0.25787 * 23 22 21
25 25 C 1.37939 * 119.77349 * 359.35486 * 24 23 22
26 26 C 1.37665 * 122.56115 * 17.99861 * 21 20 19
27 27 H 1.09002 * 109.47387 * 60.00263 * 1 2 3
28 28 H 1.09000 * 109.47284 * 180.02562 * 1 2 3
29 29 H 1.09001 * 109.47048 * 300.00163 * 1 2 3
30 30 H 0.97007 * 119.99452 * 180.02562 * 7 6 4
31 31 H 1.08998 * 109.46899 * 274.29971 * 13 12 2
32 32 H 1.08994 * 109.47159 * 34.30194 * 13 12 2
33 33 H 1.09003 * 109.47114 * 154.30085 * 13 12 2
34 34 H 1.08997 * 109.68033 * 308.25195 * 18 16 14
35 35 H 1.08993 * 109.68169 * 68.76316 * 18 16 14
36 36 H 1.08999 * 109.67732 * 189.53646 * 19 18 16
37 37 H 1.09007 * 109.67999 * 310.03522 * 19 18 16
38 38 H 1.09002 * 109.25616 * 188.61006 * 20 19 18
39 39 H 1.09000 * 109.25173 * 69.18552 * 20 19 18
40 40 H 1.07999 * 119.72515 * 0.65326 * 22 21 20
41 41 H 1.08002 * 120.11466 * 179.97438 * 23 22 21
42 42 H 1.08009 * 120.11256 * 179.61136 * 24 23 22
43 43 H 1.08004 * 119.72853 * 180.26068 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0323 -0.7103 1.2305
5 1 2.6532 -1.5885 1.1315
6 6 1.6992 -0.2393 2.4828
7 7 0.9435 0.8303 2.6034
8 14 2.3213 -1.1201 4.0080
9 1 3.1455 -2.2875 3.6039
10 1 3.1465 -0.1871 4.8165
11 1 1.1660 -1.5864 4.8162
12 7 2.0183 -0.6907 -1.1961
13 6 1.6644 -2.0933 -1.4278
14 6 2.7932 -0.0358 -2.0833
15 8 3.1699 1.0918 -1.8431
16 6 3.1915 -0.7045 -3.3737
17 1 2.4420 -1.4504 -3.6382
18 6 4.5424 -1.3925 -3.1883
19 6 5.0290 -1.8799 -4.5581
20 6 5.4008 -0.6609 -5.3997
21 6 4.2780 0.3432 -5.4029
22 6 4.2831 1.3163 -6.3942
23 6 3.2898 2.2721 -6.4433
24 6 2.2833 2.2656 -5.4954
25 6 2.2720 1.2953 -4.5150
26 6 3.2697 0.3301 -4.4658
27 1 -0.3634 0.5138 -0.8900
28 1 -0.3634 -1.0277 0.0005
29 1 -0.3633 0.5139 0.8900
30 1 0.7094 1.1620 3.4844
31 1 2.3728 -2.7376 -0.9072
32 1 0.6586 -2.2810 -1.0522
33 1 1.6984 -2.3048 -2.4966
34 1 5.2608 -0.6853 -2.7739
35 1 4.4324 -2.2416 -2.5138
36 1 5.9031 -2.5186 -4.4312
37 1 4.2345 -2.4392 -5.0523
38 1 5.6020 -0.9783 -6.4229
39 1 6.2961 -0.1975 -4.9853
40 1 5.0711 1.3244 -7.1327
41 1 3.3008 3.0258 -7.2168
42 1 1.5063 3.0153 -5.5249
43 1 1.4831 1.2884 -3.7774
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000063094580.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:56:48
Heat of formation + Delta-G solvation = -20.012648 kcal
Electronic energy + Delta-G solvation = -23359.611108 eV
Core-core repulsion = 20176.043385 eV
Total energy + Delta-G solvation = -3183.567723 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 287.163 amu
Computer time = 6.03 seconds
Orbital eigenvalues (eV)
-40.44642 -38.50907 -35.87924 -35.28588 -32.98624 -32.25493 -30.12275 -29.66768
-28.46367 -26.12149 -25.22145 -24.25334 -22.61233 -22.42313 -20.90864 -19.31046
-18.23648 -16.76958 -16.49780 -16.12146 -15.44830 -15.16946 -15.05973 -14.59710
-14.26266 -13.71526 -13.56577 -13.24046 -13.05790 -12.76361 -12.61959 -12.49250
-12.16657 -11.86497 -11.79454 -11.53175 -11.31724 -11.21664 -11.06775 -10.97430
-10.80025 -10.70752 -10.48983 -10.24639 -10.23224 -10.14346 -9.14780 -8.87625
-8.55270 -8.43143 -8.33437 -7.55517 -6.06154 -4.13705 1.52300 1.57325
3.26312 3.33777 3.36140 3.40274 3.81699 4.07447 4.41020 4.65546
4.72757 4.93000 5.06883 5.09340 5.18691 5.24445 5.28847 5.32445
5.43594 5.50475 5.59111 5.70740 5.82456 5.85713 5.90151 5.98861
6.05670 6.08921 6.19441 6.27716 6.29785 6.38830 6.63391 6.70306
6.75505 6.81721 6.83267 7.05790 7.18212 7.45243 7.53763 7.72966
8.02647 8.21323 8.55112 8.85729 9.09168 9.52860 10.99190
Molecular weight = 287.16amu
Principal moments of inertia in cm(-1)
A = 0.023984 B = 0.004544 C = 0.004149
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1167.161331 B = 6160.420034 C = 6747.045024
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.257 3.743
3 H 0.063 0.937
4 C -0.522 4.522
5 H 0.059 0.941
6 C 0.064 3.936
7 N -0.888 5.888
8 Si 0.898 3.102
9 H -0.274 1.274
10 H -0.283 1.283
11 H -0.283 1.283
12 N -0.593 5.593
13 C 0.083 3.917
14 C 0.509 3.491
15 O -0.543 6.543
16 C -0.073 4.073
17 H 0.099 0.901
18 C -0.107 4.107
19 C -0.116 4.116
20 C -0.080 4.080
21 C -0.075 4.075
22 C -0.128 4.128
23 C -0.123 4.123
24 C -0.125 4.125
25 C -0.093 4.093
26 C -0.051 4.051
27 H 0.010 0.990
28 H 0.030 0.970
29 H 0.094 0.906
30 H 0.262 0.738
31 H 0.051 0.949
32 H 0.070 0.930
33 H 0.056 0.944
34 H 0.073 0.927
35 H 0.074 0.926
36 H 0.070 0.930
37 H 0.066 0.934
38 H 0.072 0.928
39 H 0.075 0.925
40 H 0.117 0.883
41 H 0.117 0.883
42 H 0.119 0.881
43 H 0.118 0.882
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.106 -4.930 -16.991 18.162
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C 0.157 3.843
3 H 0.080 0.920
4 C -0.561 4.561
5 H 0.077 0.923
6 C -0.139 4.139
7 N -0.527 5.527
8 Si 0.726 3.274
9 H -0.198 1.198
10 H -0.209 1.209
11 H -0.210 1.210
12 N -0.324 5.324
13 C -0.061 4.061
14 C 0.295 3.705
15 O -0.421 6.421
16 C -0.095 4.095
17 H 0.117 0.883
18 C -0.145 4.145
19 C -0.153 4.153
20 C -0.117 4.117
21 C -0.075 4.075
22 C -0.146 4.146
23 C -0.141 4.141
24 C -0.143 4.143
25 C -0.111 4.111
26 C -0.051 4.051
27 H 0.029 0.971
28 H 0.049 0.951
29 H 0.112 0.888
30 H 0.072 0.928
31 H 0.069 0.931
32 H 0.089 0.911
33 H 0.074 0.926
34 H 0.092 0.908
35 H 0.092 0.908
36 H 0.088 0.912
37 H 0.085 0.915
38 H 0.090 0.910
39 H 0.094 0.906
40 H 0.135 0.865
41 H 0.135 0.865
42 H 0.137 0.863
43 H 0.136 0.864
Dipole moment (debyes) X Y Z Total
from point charges 4.199 -4.216 -16.681 17.711
hybrid contribution 0.155 -0.431 1.002 1.102
sum 4.353 -4.647 -15.679 16.923
Atomic orbital electron populations
1.22097 0.98279 0.99371 1.00805 1.18929 0.90718 0.94501 0.80124
0.91967 1.21353 1.31584 1.12877 0.90291 0.92271 1.24899 0.94991
0.94991 0.98970 1.69893 1.36551 1.22658 1.23591 0.86449 0.78588
0.79592 0.82814 1.19833 1.20934 1.20959 1.48246 1.48962 1.11552
1.23673 1.21646 1.01671 0.83413 0.99387 1.20164 0.79083 0.86482
0.84727 1.90670 1.54425 1.19295 1.77701 1.20343 0.99632 0.96907
0.92569 0.88294 1.21455 0.95207 1.00381 0.97474 1.21535 1.01293
0.97022 0.95481 1.20468 0.96342 0.94413 1.00436 1.19518 0.95729
0.97026 0.95200 1.21022 0.99087 0.95658 0.98853 1.20991 0.95206
0.98813 0.99121 1.21019 0.99104 0.98775 0.95413 1.21184 0.98348
0.94196 0.97367 1.19133 0.94795 0.96312 0.94895 0.97061 0.95074
0.88791 0.92788 0.93085 0.91141 0.92577 0.90813 0.90780 0.91161
0.91520 0.90968 0.90637 0.86513 0.86453 0.86294 0.86359
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.51 8.94 37.15 0.33 -3.18 16
2 C 0.26 6.60 2.63 -69.08 -0.18 6.42 16
3 H 0.06 1.86 6.91 -51.93 -0.36 1.50 16
4 C -0.52 -14.20 8.37 -34.44 -0.29 -14.49 16
5 H 0.06 1.59 7.52 -52.49 -0.39 1.20 16
6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16
7 N -0.89 -25.29 11.32 55.43 0.63 -24.66 16
8 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16
9 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16
10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
12 N -0.59 -12.63 2.75 -175.27 -0.48 -13.11 16
13 C 0.08 1.38 9.67 59.85 0.58 1.96 16
14 C 0.51 10.61 5.57 -10.98 -0.06 10.55 16
15 O -0.54 -13.65 15.02 5.56 0.08 -13.57 16
16 C -0.07 -1.16 2.01 -93.09 -0.19 -1.35 16
17 H 0.10 1.36 5.77 -51.93 -0.30 1.06 16
18 C -0.11 -1.47 5.24 -26.70 -0.14 -1.61 16
19 C -0.12 -1.21 5.98 -26.71 -0.16 -1.37 16
20 C -0.08 -0.86 5.67 -28.06 -0.16 -1.02 16
21 C -0.07 -1.02 5.74 -104.62 -0.60 -1.62 16
22 C -0.13 -1.60 9.61 -39.44 -0.38 -1.98 16
23 C -0.12 -1.55 10.05 -39.69 -0.40 -1.95 16
24 C -0.13 -1.78 10.05 -39.68 -0.40 -2.18 16
25 C -0.09 -1.53 8.46 -39.44 -0.33 -1.87 16
26 C -0.05 -0.81 5.11 -104.62 -0.53 -1.34 16
27 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16
28 H 0.03 0.68 6.69 -51.93 -0.35 0.33 16
29 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16
30 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16
31 H 0.05 0.83 8.01 -51.93 -0.42 0.42 16
32 H 0.07 1.17 6.44 -51.93 -0.33 0.84 16
33 H 0.06 0.74 5.51 -51.93 -0.29 0.45 16
34 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16
35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16
36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
37 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16
38 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16
39 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16
40 H 0.12 1.14 8.05 -52.49 -0.42 0.72 16
41 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16
42 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16
43 H 0.12 2.11 7.19 -52.48 -0.38 1.73 16
LS Contribution 337.81 15.07 5.09 5.09
Total: -1.00 -31.73 337.81 -9.19 -40.93
By element:
Atomic # 1 Polarization: 9.04 SS G_CDS: -6.49 Total: 2.56 kcal
Atomic # 6 Polarization: -10.37 SS G_CDS: -3.01 Total: -13.38 kcal
Atomic # 7 Polarization: -37.92 SS G_CDS: 0.15 Total: -37.78 kcal
Atomic # 8 Polarization: -13.65 SS G_CDS: 0.08 Total: -13.57 kcal
Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal
Total LS contribution 5.09 Total: 5.09 kcal
Total: -31.73 -9.19 -40.93 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000063094580.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.915 kcal
(2) G-P(sol) polarization free energy of solvation -31.734 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.819 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.927 kcal
(6) G-S(sol) free energy of system = (1) + (5) -20.013 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 6.03 seconds