Wall clock time and date at job start Tue Mar 31 2020 02:56:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.08996 * 109.47167 * 2 1
4 4 C 1.50703 * 109.47315 * 119.99704 * 2 1 3
5 5 H 1.08000 * 120.00489 * 119.99876 * 4 2 1
6 6 C 1.37884 * 120.00055 * 300.00256 * 4 2 1
7 7 N 1.31516 * 119.99472 * 359.97438 * 6 4 2
8 8 Si 1.86795 * 120.00101 * 179.97438 * 6 4 2
9 9 H 1.48501 * 109.47236 * 359.97438 * 8 6 4
10 10 H 1.48499 * 109.46984 * 120.00033 * 8 6 4
11 11 H 1.48506 * 109.46965 * 239.99688 * 8 6 4
12 12 N 1.46499 * 109.47409 * 239.99336 * 2 1 3
13 13 C 1.46497 * 120.00118 * 300.00597 * 12 2 1
14 14 C 1.34778 * 119.99826 * 119.99859 * 12 2 1
15 15 O 1.21283 * 120.00040 * 5.59033 * 14 12 2
16 16 C 1.50701 * 120.00081 * 185.58946 * 14 12 2
17 17 H 1.09001 * 109.24861 * 26.29785 * 16 14 12
18 18 C 1.52732 * 109.25265 * 266.85928 * 16 14 12
19 19 C 1.53317 * 108.39019 * 188.52807 * 18 16 14
20 20 C 1.52725 * 108.41507 * 69.80284 * 19 18 16
21 21 C 1.50625 * 110.59583 * 308.89816 * 20 19 18
22 22 C 1.38915 * 117.75946 * 197.63000 * 21 20 19
23 23 C 1.37933 * 120.54289 * 180.63776 * 22 21 20
24 24 C 1.38259 * 119.77264 * 0.25787 * 23 22 21
25 25 C 1.37939 * 119.77349 * 359.35486 * 24 23 22
26 26 C 1.37665 * 122.56115 * 17.99861 * 21 20 19
27 27 H 1.09002 * 109.47387 * 60.00263 * 1 2 3
28 28 H 1.09000 * 109.47284 * 180.02562 * 1 2 3
29 29 H 1.09001 * 109.47048 * 300.00163 * 1 2 3
30 30 H 0.97007 * 119.99452 * 180.02562 * 7 6 4
31 31 H 1.08998 * 109.46899 * 274.29971 * 13 12 2
32 32 H 1.08994 * 109.47159 * 34.30194 * 13 12 2
33 33 H 1.09003 * 109.47114 * 154.30085 * 13 12 2
34 34 H 1.08997 * 109.68033 * 308.25195 * 18 16 14
35 35 H 1.08993 * 109.68169 * 68.76316 * 18 16 14
36 36 H 1.08999 * 109.67732 * 189.53646 * 19 18 16
37 37 H 1.09007 * 109.67999 * 310.03522 * 19 18 16
38 38 H 1.09002 * 109.25616 * 188.61006 * 20 19 18
39 39 H 1.09000 * 109.25173 * 69.18552 * 20 19 18
40 40 H 1.07999 * 119.72515 * 0.65326 * 22 21 20
41 41 H 1.08002 * 120.11466 * 179.97438 * 23 22 21
42 42 H 1.08009 * 120.11256 * 179.61136 * 24 23 22
43 43 H 1.08004 * 119.72853 * 180.26068 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0323 -0.7103 1.2305
5 1 2.6532 -1.5885 1.1315
6 6 1.6992 -0.2393 2.4828
7 7 0.9435 0.8303 2.6034
8 14 2.3213 -1.1201 4.0080
9 1 3.1455 -2.2875 3.6039
10 1 3.1465 -0.1871 4.8165
11 1 1.1660 -1.5864 4.8162
12 7 2.0183 -0.6907 -1.1961
13 6 1.6644 -2.0933 -1.4278
14 6 2.7932 -0.0358 -2.0833
15 8 3.1699 1.0918 -1.8431
16 6 3.1915 -0.7045 -3.3737
17 1 2.4420 -1.4504 -3.6382
18 6 4.5424 -1.3925 -3.1883
19 6 5.0290 -1.8799 -4.5581
20 6 5.4008 -0.6609 -5.3997
21 6 4.2780 0.3432 -5.4029
22 6 4.2831 1.3163 -6.3942
23 6 3.2898 2.2721 -6.4433
24 6 2.2833 2.2656 -5.4954
25 6 2.2720 1.2953 -4.5150
26 6 3.2697 0.3301 -4.4658
27 1 -0.3634 0.5138 -0.8900
28 1 -0.3634 -1.0277 0.0005
29 1 -0.3633 0.5139 0.8900
30 1 0.7094 1.1620 3.4844
31 1 2.3728 -2.7376 -0.9072
32 1 0.6586 -2.2810 -1.0522
33 1 1.6984 -2.3048 -2.4966
34 1 5.2608 -0.6853 -2.7739
35 1 4.4324 -2.2416 -2.5138
36 1 5.9031 -2.5186 -4.4312
37 1 4.2345 -2.4392 -5.0523
38 1 5.6020 -0.9783 -6.4229
39 1 6.2961 -0.1975 -4.9853
40 1 5.0711 1.3244 -7.1327
41 1 3.3008 3.0258 -7.2168
42 1 1.5063 3.0153 -5.5249
43 1 1.4831 1.2884 -3.7774
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000063094580.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:56:45
Heat of formation + Delta-G solvation = -37.524787 kcal
Electronic energy + Delta-G solvation = -23360.370491 eV
Core-core repulsion = 20176.043385 eV
Total energy + Delta-G solvation = -3184.327106 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 287.163 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-41.72741 -39.93811 -37.18619 -36.86531 -34.83700 -33.53828 -31.44067 -31.11696
-29.68891 -27.64340 -27.31219 -25.46403 -23.66160 -23.60328 -22.51973 -20.43992
-19.79906 -18.59180 -18.06546 -17.52212 -16.95238 -16.57357 -16.14941 -16.01368
-15.87760 -14.87930 -14.82282 -14.67679 -14.36250 -14.23407 -13.97294 -13.82358
-13.51160 -13.30704 -13.09705 -13.01078 -12.93680 -12.71684 -12.65691 -12.42225
-12.28885 -12.20606 -12.12080 -11.92427 -11.53054 -11.23237 -11.17308 -10.62067
-10.43180 -9.63978 -9.43442 -9.32764 -8.16041 -6.32742 0.45335 0.49665
1.39006 1.40658 1.52159 1.78419 2.29245 2.47122 2.88455 3.11715
3.51988 3.70809 3.85130 3.96663 4.09323 4.11947 4.21639 4.30598
4.37056 4.50455 4.54841 4.63251 4.68885 4.75706 4.80730 4.84481
4.92167 5.00018 5.00652 5.04088 5.05202 5.13144 5.17550 5.30931
5.41970 5.44477 5.59526 5.61586 5.64376 5.66345 5.74914 6.01920
6.14393 6.15738 6.75419 6.82640 7.31304 7.48417 8.88493
Molecular weight = 287.16amu
Principal moments of inertia in cm(-1)
A = 0.023984 B = 0.004544 C = 0.004149
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1167.161331 B = 6160.420034 C = 6747.045024
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C 0.262 3.738
3 H 0.004 0.996
4 C -0.536 4.536
5 H 0.060 0.940
6 C 0.013 3.987
7 N -0.919 5.919
8 Si 0.966 3.034
9 H -0.264 1.264
10 H -0.286 1.286
11 H -0.273 1.273
12 N -0.601 5.601
13 C 0.079 3.921
14 C 0.502 3.498
15 O -0.599 6.599
16 C -0.060 4.060
17 H 0.121 0.879
18 C -0.107 4.107
19 C -0.107 4.107
20 C -0.080 4.080
21 C -0.080 4.080
22 C -0.127 4.127
23 C -0.121 4.121
24 C -0.139 4.139
25 C -0.123 4.123
26 C -0.076 4.076
27 H 0.018 0.982
28 H 0.050 0.950
29 H 0.067 0.933
30 H 0.264 0.736
31 H 0.057 0.943
32 H 0.070 0.930
33 H 0.096 0.904
34 H 0.046 0.954
35 H 0.082 0.918
36 H 0.095 0.905
37 H 0.082 0.918
38 H 0.104 0.896
39 H 0.076 0.924
40 H 0.152 0.848
41 H 0.149 0.851
42 H 0.129 0.871
43 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.562 -7.335 -19.205 21.297
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C 0.159 3.841
3 H 0.022 0.978
4 C -0.574 4.574
5 H 0.078 0.922
6 C -0.186 4.186
7 N -0.558 5.558
8 Si 0.791 3.209
9 H -0.188 1.188
10 H -0.212 1.212
11 H -0.198 1.198
12 N -0.331 5.331
13 C -0.063 4.063
14 C 0.291 3.709
15 O -0.481 6.481
16 C -0.081 4.081
17 H 0.139 0.861
18 C -0.145 4.145
19 C -0.144 4.144
20 C -0.117 4.117
21 C -0.080 4.080
22 C -0.144 4.144
23 C -0.139 4.139
24 C -0.157 4.157
25 C -0.142 4.142
26 C -0.076 4.076
27 H 0.037 0.963
28 H 0.068 0.932
29 H 0.086 0.914
30 H 0.073 0.927
31 H 0.076 0.924
32 H 0.089 0.911
33 H 0.114 0.886
34 H 0.065 0.935
35 H 0.100 0.900
36 H 0.114 0.886
37 H 0.100 0.900
38 H 0.122 0.878
39 H 0.094 0.906
40 H 0.170 0.830
41 H 0.167 0.833
42 H 0.147 0.853
43 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges 5.643 -6.666 -18.919 20.838
hybrid contribution -0.295 0.411 1.644 1.720
sum 5.348 -6.255 -17.275 19.135
Atomic orbital electron populations
1.21874 0.97120 1.00206 0.99859 1.18510 0.91544 0.92033 0.81964
0.97785 1.21596 1.31738 1.12944 0.91142 0.92170 1.25765 0.95088
0.95652 1.02102 1.70040 1.37473 1.23964 1.24332 0.85390 0.78248
0.78479 0.78797 1.18804 1.21226 1.19846 1.48258 1.48965 1.13362
1.22518 1.21907 1.01726 0.80503 1.02212 1.21152 0.77812 0.85897
0.86024 1.90626 1.56442 1.21911 1.79076 1.20320 1.01343 0.97080
0.89325 0.86105 1.21501 0.93197 0.99709 1.00073 1.21540 1.02710
0.97253 0.92928 1.20581 0.94958 0.93757 1.02396 1.19927 0.95516
0.98025 0.94562 1.21484 0.99512 0.94587 0.98864 1.21385 0.94227
0.99370 0.98915 1.21244 1.00356 0.98545 0.95557 1.21144 0.98701
0.96300 0.98041 1.19268 0.95819 0.96679 0.95874 0.96291 0.93152
0.91388 0.92682 0.92416 0.91092 0.88578 0.93547 0.89957 0.88645
0.89977 0.87793 0.90562 0.83011 0.83310 0.85329 0.89509
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -6.55 8.94 71.98 0.64 -5.90 16
2 C 0.26 14.09 2.63 44.24 0.12 14.21 16
3 H 0.00 0.27 6.91 -2.39 -0.02 0.25 16
4 C -0.54 -29.87 8.37 25.60 0.21 -29.65 16
5 H 0.06 3.26 7.52 -2.91 -0.02 3.24 16
6 C 0.01 0.74 5.30 84.66 0.45 1.19 16
7 N -0.92 -54.14 11.32 21.45 0.24 -53.90 16
8 Si 0.97 43.81 29.54 68.60 2.03 45.83 16
9 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16
10 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16
11 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16
12 N -0.60 -26.34 2.75 -826.82 -2.28 -28.62 16
13 C 0.08 2.53 9.67 127.77 1.24 3.76 16
14 C 0.50 21.86 5.57 87.66 0.49 22.35 16
15 O -0.60 -32.43 15.02 -3.04 -0.05 -32.47 16
16 C -0.06 -1.87 2.01 -12.40 -0.02 -1.90 16
17 H 0.12 3.11 5.77 -2.39 -0.01 3.09 16
18 C -0.11 -2.78 5.24 30.61 0.16 -2.62 16
19 C -0.11 -1.84 5.98 30.61 0.18 -1.66 16
20 C -0.08 -1.44 5.67 29.73 0.17 -1.27 16
21 C -0.08 -2.02 5.74 -19.86 -0.11 -2.14 16
22 C -0.13 -2.77 9.61 22.36 0.21 -2.55 16
23 C -0.12 -2.79 10.05 22.20 0.22 -2.57 16
24 C -0.14 -3.99 10.05 22.20 0.22 -3.77 16
25 C -0.12 -4.27 8.46 22.36 0.19 -4.08 16
26 C -0.08 -2.40 5.11 -19.86 -0.10 -2.50 16
27 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16
28 H 0.05 2.24 6.69 -2.39 -0.02 2.23 16
29 H 0.07 3.74 6.07 -2.39 -0.01 3.72 16
30 H 0.26 14.68 8.31 -92.70 -0.77 13.91 16
31 H 0.06 1.79 8.01 -2.39 -0.02 1.77 16
32 H 0.07 2.27 6.44 -2.39 -0.02 2.26 16
33 H 0.10 2.28 5.51 -2.39 -0.01 2.27 16
34 H 0.05 1.45 8.08 -2.39 -0.02 1.43 16
35 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16
36 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16
37 H 0.08 1.21 8.10 -2.38 -0.02 1.19 16
38 H 0.10 1.26 8.12 -2.39 -0.02 1.24 16
39 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16
40 H 0.15 2.23 8.05 -2.91 -0.02 2.20 16
41 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16
42 H 0.13 3.24 8.06 -2.91 -0.02 3.22 16
43 H 0.09 3.42 7.19 -2.91 -0.02 3.40 16
Total: -1.00 -74.54 337.81 5.21 -69.33
By element:
Atomic # 1 Polarization: 17.94 SS G_CDS: 0.99 Total: 18.94 kcal
Atomic # 6 Polarization: -23.37 SS G_CDS: 4.27 Total: -19.10 kcal
Atomic # 7 Polarization: -80.49 SS G_CDS: -2.03 Total: -82.52 kcal
Atomic # 8 Polarization: -32.43 SS G_CDS: -0.05 Total: -32.47 kcal
Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal
Total: -74.54 5.21 -69.33 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000063094580.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.802 kcal
(2) G-P(sol) polarization free energy of solvation -74.536 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.734 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.210 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.326 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.525 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds