Wall clock time and date at job start Tue Mar 31 2020 02:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.46548 * 2 1 4 4 C 1.50693 * 109.47387 * 240.00278 * 2 1 3 5 5 H 1.08002 * 120.00394 * 239.99730 * 4 2 1 6 6 C 1.37883 * 120.00141 * 59.99910 * 4 2 1 7 7 N 1.31512 * 119.99894 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47004 * 59.99754 * 8 6 4 10 10 H 1.48501 * 109.46930 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46982 * 299.99648 * 8 6 4 12 12 N 1.46500 * 109.47105 * 119.99841 * 2 1 3 13 13 C 1.46497 * 119.99872 * 60.00702 * 12 2 1 14 14 C 1.34784 * 119.99959 * 240.00342 * 12 2 1 15 15 O 1.21278 * 119.99808 * 5.59668 * 14 12 2 16 16 C 1.50694 * 119.99714 * 185.60011 * 14 12 2 17 17 H 1.08994 * 109.25745 * 26.31239 * 16 14 12 18 18 C 1.52735 * 109.25554 * 266.87055 * 16 14 12 19 19 C 1.53317 * 108.39445 * 188.52593 * 18 16 14 20 20 C 1.52730 * 108.40724 * 69.80763 * 19 18 16 21 21 C 1.50625 * 110.60063 * 308.89568 * 20 19 18 22 22 C 1.38910 * 117.76100 * 197.63351 * 21 20 19 23 23 C 1.37933 * 120.53988 * 180.63210 * 22 21 20 24 24 C 1.38264 * 119.77832 * 0.26408 * 23 22 21 25 25 C 1.37941 * 119.76635 * 359.35113 * 24 23 22 26 26 C 1.37662 * 122.55537 * 17.99886 * 21 20 19 27 27 H 1.08998 * 109.47213 * 60.00441 * 1 2 3 28 28 H 1.09008 * 109.46548 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47411 * 299.99491 * 1 2 3 30 30 H 0.96997 * 119.99610 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.46899 * 274.25626 * 13 12 2 32 32 H 1.08994 * 109.47159 * 34.25849 * 13 12 2 33 33 H 1.09003 * 109.47114 * 154.25739 * 13 12 2 34 34 H 1.09002 * 109.68218 * 308.25685 * 18 16 14 35 35 H 1.09006 * 109.67571 * 68.80766 * 18 16 14 36 36 H 1.09002 * 109.67469 * 189.53299 * 19 18 16 37 37 H 1.09001 * 109.68138 * 310.04171 * 19 18 16 38 38 H 1.08999 * 109.24971 * 188.60577 * 20 19 18 39 39 H 1.09003 * 109.25297 * 69.18551 * 20 19 18 40 40 H 1.07991 * 119.72897 * 0.65764 * 22 21 20 41 41 H 1.07996 * 120.10961 * 179.97438 * 23 22 21 42 42 H 1.07996 * 120.11638 * 179.60503 * 24 23 22 43 43 H 1.07996 * 119.73106 * 180.26462 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3215 -1.1202 -4.0080 9 1 1.8260 -2.5201 -4.0077 10 1 1.8261 -0.4204 -5.2205 11 1 3.8065 -1.1206 -4.0081 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4279 14 6 2.7931 -0.0355 2.0834 15 8 3.0027 1.1511 1.9455 16 6 3.3991 -0.7775 3.2466 17 1 3.5138 -1.8286 2.9821 18 6 2.4730 -0.6613 4.4557 19 6 3.1997 -1.2335 5.6784 20 6 4.3372 -0.2849 6.0511 21 6 5.1873 0.0224 4.8462 22 6 6.4534 0.5501 5.0653 23 6 7.2750 0.8647 4.0030 24 6 6.8337 0.6587 2.7090 25 6 5.5798 0.1273 2.4895 26 6 4.7521 -0.1933 3.5581 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 0.7088 1.1613 -3.4844 31 1 0.6999 -2.1459 1.9328 32 1 1.6038 -2.6151 0.4730 33 1 2.4266 -2.5620 2.0505 34 1 2.2281 0.3863 4.6311 35 1 1.5592 -1.2271 4.2738 36 1 2.5036 -1.3175 6.5130 37 1 3.6048 -2.2165 5.4380 38 1 4.9560 -0.7498 6.8185 39 1 3.9183 0.6427 6.4414 40 1 6.7975 0.7150 6.0756 41 1 8.2580 1.2751 4.1813 42 1 7.4700 0.9091 1.8730 43 1 5.2373 -0.0374 1.4787 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094583.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:58 Heat of formation + Delta-G solvation = -20.980569 kcal Electronic energy + Delta-G solvation = -23389.597924 eV Core-core repulsion = 20205.988229 eV Total energy + Delta-G solvation = -3183.609695 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.42938 -38.49629 -35.86957 -35.28001 -32.98598 -32.24523 -30.10218 -29.65025 -28.46101 -26.08837 -25.22188 -24.24784 -22.60302 -22.38252 -20.92669 -19.32585 -18.20916 -16.74444 -16.44763 -16.18690 -15.39275 -15.17195 -15.08486 -14.54599 -14.27542 -13.70899 -13.57039 -13.22793 -12.95590 -12.73037 -12.63578 -12.44820 -12.19677 -11.82993 -11.76338 -11.54315 -11.30830 -11.24438 -11.04330 -10.98423 -10.84911 -10.71201 -10.46143 -10.24732 -10.21913 -10.15494 -9.19319 -8.87024 -8.50959 -8.43370 -8.30922 -7.55634 -6.07306 -4.15705 1.55798 1.61765 3.27151 3.32340 3.32958 3.39858 3.84226 4.09436 4.39532 4.65911 4.72874 4.91593 5.08872 5.11842 5.20889 5.23594 5.29318 5.36340 5.44118 5.52756 5.59695 5.72464 5.82842 5.85800 5.91459 5.98618 6.04929 6.06398 6.23360 6.29469 6.31667 6.41696 6.66751 6.75728 6.77048 6.84672 6.87750 7.08424 7.22791 7.44725 7.54913 7.72045 8.02881 8.20298 8.55151 8.83242 9.08762 9.50962 10.97863 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.020726 B = 0.004879 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.621881 B = 5737.782298 C = 6517.912843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.259 3.741 3 H 0.062 0.938 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.593 5.593 13 C 0.079 3.921 14 C 0.510 3.490 15 O -0.545 6.545 16 C -0.074 4.074 17 H 0.100 0.900 18 C -0.107 4.107 19 C -0.116 4.116 20 C -0.079 4.079 21 C -0.076 4.076 22 C -0.129 4.129 23 C -0.123 4.123 24 C -0.124 4.124 25 C -0.091 4.091 26 C -0.052 4.052 27 H 0.092 0.908 28 H 0.029 0.971 29 H 0.010 0.990 30 H 0.264 0.736 31 H 0.044 0.956 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.219 -5.661 15.539 17.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.159 3.841 3 H 0.080 0.920 4 C -0.566 4.566 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.324 5.324 13 C -0.064 4.064 14 C 0.296 3.704 15 O -0.423 6.423 16 C -0.095 4.095 17 H 0.118 0.882 18 C -0.144 4.144 19 C -0.153 4.153 20 C -0.116 4.116 21 C -0.076 4.076 22 C -0.147 4.147 23 C -0.141 4.141 24 C -0.143 4.143 25 C -0.109 4.109 26 C -0.052 4.052 27 H 0.111 0.889 28 H 0.048 0.952 29 H 0.029 0.971 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.213 -4.907 15.279 17.209 hybrid contribution 0.308 -0.502 -1.065 1.217 sum 6.520 -5.410 14.214 16.548 Atomic orbital electron populations 1.22067 0.98273 0.99322 1.00737 1.18915 0.90930 0.94451 0.79846 0.92008 1.21278 1.31947 1.13044 0.90316 0.92315 1.24891 0.94928 0.94967 0.98929 1.69873 1.36202 1.22562 1.23852 0.86565 0.79226 0.79592 0.82055 1.20226 1.21161 1.20258 1.48252 1.49100 1.11599 1.23425 1.21688 0.98876 0.83582 1.02299 1.20161 0.79475 0.87633 0.83084 1.90664 1.61208 1.15262 1.75144 1.20339 0.93013 1.00622 0.95502 0.88229 1.21456 0.97475 1.02521 0.92996 1.21535 0.97162 0.98897 0.97750 1.20459 0.96171 0.99904 0.95062 1.19498 0.94872 0.99549 0.93680 1.21004 0.94062 1.00985 0.98696 1.20993 0.99511 1.00722 0.92874 1.21036 0.96317 1.00017 0.96883 1.21259 0.93544 0.97076 0.99066 1.19118 0.94262 0.99327 0.92528 0.88926 0.95213 0.97057 0.92627 0.93740 0.90300 0.92460 0.90907 0.90933 0.91200 0.91478 0.90984 0.90703 0.86562 0.86485 0.86257 0.86007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 8.97 37.16 0.33 -3.18 16 2 C 0.26 6.63 2.63 -69.09 -0.18 6.45 16 3 H 0.06 1.85 6.91 -51.92 -0.36 1.49 16 4 C -0.53 -14.16 8.02 -34.44 -0.28 -14.43 16 5 H 0.06 1.54 7.26 -52.49 -0.38 1.16 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.13 11.32 55.43 0.63 -24.51 16 8 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 N -0.59 -12.62 2.75 -175.27 -0.48 -13.11 16 13 C 0.08 1.32 9.42 59.85 0.56 1.89 16 14 C 0.51 10.64 5.57 -10.99 -0.06 10.58 16 15 O -0.54 -13.65 15.01 5.56 0.08 -13.56 16 16 C -0.07 -1.17 2.01 -93.09 -0.19 -1.36 16 17 H 0.10 1.41 5.77 -51.93 -0.30 1.11 16 18 C -0.11 -1.41 5.24 -26.70 -0.14 -1.55 16 19 C -0.12 -1.18 5.98 -26.71 -0.16 -1.34 16 20 C -0.08 -0.85 5.67 -28.06 -0.16 -1.01 16 21 C -0.08 -1.05 5.74 -104.62 -0.60 -1.65 16 22 C -0.13 -1.65 9.61 -39.44 -0.38 -2.03 16 23 C -0.12 -1.61 10.05 -39.68 -0.40 -2.01 16 24 C -0.12 -1.87 10.05 -39.68 -0.40 -2.27 16 25 C -0.09 -1.59 8.46 -39.44 -0.33 -1.93 16 26 C -0.05 -0.84 5.11 -104.61 -0.53 -1.38 16 27 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 28 H 0.03 0.66 7.67 -51.92 -0.40 0.26 16 29 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.08 1.39 6.97 -51.93 -0.36 1.03 16 33 H 0.06 0.78 5.51 -51.93 -0.29 0.49 16 34 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 38 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.12 1.16 8.05 -52.49 -0.42 0.74 16 41 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 42 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 43 H 0.12 2.36 7.19 -52.49 -0.38 1.99 16 LS Contribution 338.64 15.07 5.10 5.10 Total: -1.00 -31.36 338.64 -9.26 -40.61 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -6.56 Total: 3.06 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: -3.01 Total: -13.55 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.14 Total: -37.61 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.08 Total: -13.56 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.36 -9.26 -40.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094583.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.634 kcal (2) G-P(sol) polarization free energy of solvation -31.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds