Wall clock time and date at job start Tue Mar 31 2020 02:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.46548 * 2 1 4 4 C 1.50693 * 109.47387 * 240.00278 * 2 1 3 5 5 H 1.08002 * 120.00394 * 239.99730 * 4 2 1 6 6 C 1.37883 * 120.00141 * 59.99910 * 4 2 1 7 7 N 1.31512 * 119.99894 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47004 * 59.99754 * 8 6 4 10 10 H 1.48501 * 109.46930 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46982 * 299.99648 * 8 6 4 12 12 N 1.46500 * 109.47105 * 119.99841 * 2 1 3 13 13 C 1.46497 * 119.99872 * 60.00702 * 12 2 1 14 14 C 1.34784 * 119.99959 * 240.00342 * 12 2 1 15 15 O 1.21278 * 119.99808 * 5.59668 * 14 12 2 16 16 C 1.50694 * 119.99714 * 185.60011 * 14 12 2 17 17 H 1.08994 * 109.25745 * 26.31239 * 16 14 12 18 18 C 1.52735 * 109.25554 * 266.87055 * 16 14 12 19 19 C 1.53317 * 108.39445 * 188.52593 * 18 16 14 20 20 C 1.52730 * 108.40724 * 69.80763 * 19 18 16 21 21 C 1.50625 * 110.60063 * 308.89568 * 20 19 18 22 22 C 1.38910 * 117.76100 * 197.63351 * 21 20 19 23 23 C 1.37933 * 120.53988 * 180.63210 * 22 21 20 24 24 C 1.38264 * 119.77832 * 0.26408 * 23 22 21 25 25 C 1.37941 * 119.76635 * 359.35113 * 24 23 22 26 26 C 1.37662 * 122.55537 * 17.99886 * 21 20 19 27 27 H 1.08998 * 109.47213 * 60.00441 * 1 2 3 28 28 H 1.09008 * 109.46548 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47411 * 299.99491 * 1 2 3 30 30 H 0.96997 * 119.99610 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.46899 * 274.25626 * 13 12 2 32 32 H 1.08994 * 109.47159 * 34.25849 * 13 12 2 33 33 H 1.09003 * 109.47114 * 154.25739 * 13 12 2 34 34 H 1.09002 * 109.68218 * 308.25685 * 18 16 14 35 35 H 1.09006 * 109.67571 * 68.80766 * 18 16 14 36 36 H 1.09002 * 109.67469 * 189.53299 * 19 18 16 37 37 H 1.09001 * 109.68138 * 310.04171 * 19 18 16 38 38 H 1.08999 * 109.24971 * 188.60577 * 20 19 18 39 39 H 1.09003 * 109.25297 * 69.18551 * 20 19 18 40 40 H 1.07991 * 119.72897 * 0.65764 * 22 21 20 41 41 H 1.07996 * 120.10961 * 179.97438 * 23 22 21 42 42 H 1.07996 * 120.11638 * 179.60503 * 24 23 22 43 43 H 1.07996 * 119.73106 * 180.26462 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3215 -1.1202 -4.0080 9 1 1.8260 -2.5201 -4.0077 10 1 1.8261 -0.4204 -5.2205 11 1 3.8065 -1.1206 -4.0081 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4279 14 6 2.7931 -0.0355 2.0834 15 8 3.0027 1.1511 1.9455 16 6 3.3991 -0.7775 3.2466 17 1 3.5138 -1.8286 2.9821 18 6 2.4730 -0.6613 4.4557 19 6 3.1997 -1.2335 5.6784 20 6 4.3372 -0.2849 6.0511 21 6 5.1873 0.0224 4.8462 22 6 6.4534 0.5501 5.0653 23 6 7.2750 0.8647 4.0030 24 6 6.8337 0.6587 2.7090 25 6 5.5798 0.1273 2.4895 26 6 4.7521 -0.1933 3.5581 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 0.7088 1.1613 -3.4844 31 1 0.6999 -2.1459 1.9328 32 1 1.6038 -2.6151 0.4730 33 1 2.4266 -2.5620 2.0505 34 1 2.2281 0.3863 4.6311 35 1 1.5592 -1.2271 4.2738 36 1 2.5036 -1.3175 6.5130 37 1 3.6048 -2.2165 5.4380 38 1 4.9560 -0.7498 6.8185 39 1 3.9183 0.6427 6.4414 40 1 6.7975 0.7150 6.0756 41 1 8.2580 1.2751 4.1813 42 1 7.4700 0.9091 1.8730 43 1 5.2373 -0.0374 1.4787 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063094583.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:55 Heat of formation + Delta-G solvation = -38.248880 kcal Electronic energy + Delta-G solvation = -23390.346734 eV Core-core repulsion = 20205.988229 eV Total energy + Delta-G solvation = -3184.358505 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 2.64 seconds Orbital eigenvalues (eV) -41.72562 -39.94043 -37.18043 -36.86244 -34.83649 -33.54156 -31.43335 -31.12144 -29.69719 -27.59811 -27.32763 -25.44743 -23.67299 -23.59082 -22.55562 -20.45759 -19.76655 -18.56319 -18.07332 -17.56164 -16.97130 -16.53091 -16.16996 -16.01263 -15.85561 -15.01589 -14.69812 -14.57290 -14.35021 -14.20143 -13.94133 -13.90734 -13.52195 -13.28145 -13.08616 -12.98295 -12.94796 -12.76359 -12.66067 -12.42689 -12.29459 -12.20513 -12.13846 -11.91277 -11.51407 -11.23589 -11.21504 -10.61803 -10.42788 -9.64678 -9.44085 -9.31969 -8.16618 -6.33711 0.44743 0.48961 1.39207 1.41707 1.49189 1.78467 2.29544 2.46984 2.87971 3.11042 3.52205 3.71320 3.85256 3.98133 4.09905 4.12238 4.21394 4.30736 4.37448 4.51966 4.57377 4.63466 4.71679 4.75361 4.79840 4.87408 4.91956 5.00556 5.02323 5.04299 5.06452 5.12796 5.18191 5.31245 5.43117 5.45376 5.57428 5.60629 5.64451 5.65578 5.74704 6.02902 6.14021 6.15304 6.74108 6.82696 7.30408 7.47986 8.87676 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.020726 B = 0.004879 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.621881 B = 5737.782298 C = 6517.912843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.263 3.737 3 H 0.003 0.997 4 C -0.539 4.539 5 H 0.061 0.939 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.965 3.035 9 H -0.260 1.260 10 H -0.283 1.283 11 H -0.278 1.278 12 N -0.601 5.601 13 C 0.075 3.925 14 C 0.503 3.497 15 O -0.600 6.600 16 C -0.061 4.061 17 H 0.118 0.882 18 C -0.105 4.105 19 C -0.108 4.108 20 C -0.080 4.080 21 C -0.079 4.079 22 C -0.126 4.126 23 C -0.120 4.120 24 C -0.141 4.141 25 C -0.125 4.125 26 C -0.076 4.076 27 H 0.066 0.934 28 H 0.048 0.952 29 H 0.017 0.983 30 H 0.265 0.735 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.049 0.951 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.103 0.897 39 H 0.079 0.921 40 H 0.154 0.846 41 H 0.149 0.851 42 H 0.125 0.875 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.080 -7.928 18.311 21.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.161 3.839 3 H 0.021 0.979 4 C -0.578 4.578 5 H 0.079 0.921 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.790 3.210 9 H -0.185 1.185 10 H -0.208 1.208 11 H -0.204 1.204 12 N -0.331 5.331 13 C -0.067 4.067 14 C 0.292 3.708 15 O -0.482 6.482 16 C -0.082 4.082 17 H 0.135 0.865 18 C -0.143 4.143 19 C -0.145 4.145 20 C -0.116 4.116 21 C -0.079 4.079 22 C -0.144 4.144 23 C -0.138 4.138 24 C -0.159 4.159 25 C -0.144 4.144 26 C -0.076 4.076 27 H 0.085 0.915 28 H 0.067 0.933 29 H 0.036 0.964 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.068 0.932 35 H 0.105 0.895 36 H 0.116 0.884 37 H 0.098 0.902 38 H 0.122 0.878 39 H 0.097 0.903 40 H 0.172 0.828 41 H 0.167 0.833 42 H 0.143 0.857 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.064 -7.223 18.074 20.706 hybrid contribution 0.089 0.279 -1.897 1.920 sum 7.153 -6.944 16.176 19.002 Atomic orbital electron populations 1.21846 0.97179 1.00081 0.99759 1.18494 0.91682 0.91985 0.81756 0.97858 1.21534 1.32011 1.13127 0.91109 0.92085 1.25753 0.95026 0.95627 1.02047 1.70025 1.37225 1.23897 1.24493 0.85509 0.78333 0.79091 0.78090 1.18491 1.20835 1.20376 1.48261 1.49189 1.13398 1.22232 1.21945 1.01289 0.80710 1.02724 1.21138 0.78447 0.87303 0.83927 1.90619 1.62875 1.18014 1.76654 1.20330 0.93284 1.00401 0.94168 0.86465 1.21513 0.97829 1.01755 0.93200 1.21548 0.97208 0.98943 0.96820 1.20588 0.96349 1.00579 0.94133 1.19941 0.95886 0.98435 0.93642 1.21494 0.93337 0.99238 1.00335 1.21376 1.00932 0.99668 0.91837 1.21225 0.95708 1.00312 0.98616 1.21160 0.95406 0.99981 0.97822 1.19275 0.94162 1.00707 0.93471 0.91492 0.93345 0.96383 0.92628 0.91398 0.91350 0.88990 0.93181 0.89526 0.88373 0.90220 0.87844 0.90307 0.82820 0.83303 0.85706 0.90002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.49 8.97 71.98 0.65 -5.84 16 2 C 0.26 14.18 2.63 44.24 0.12 14.30 16 3 H 0.00 0.22 6.91 -2.38 -0.02 0.21 16 4 C -0.54 -29.96 8.02 25.60 0.21 -29.76 16 5 H 0.06 3.27 7.26 -2.91 -0.02 3.25 16 6 C 0.02 0.84 5.30 84.66 0.45 1.29 16 7 N -0.92 -54.03 11.32 21.45 0.24 -53.78 16 8 Si 0.97 43.67 29.54 68.60 2.03 45.70 16 9 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 12 N -0.60 -26.38 2.75 -826.82 -2.28 -28.65 16 13 C 0.08 2.43 9.42 127.77 1.20 3.63 16 14 C 0.50 21.95 5.57 87.65 0.49 22.44 16 15 O -0.60 -32.44 15.01 -3.02 -0.05 -32.49 16 16 C -0.06 -1.92 2.01 -12.40 -0.02 -1.95 16 17 H 0.12 3.15 5.77 -2.39 -0.01 3.14 16 18 C -0.11 -2.57 5.24 30.61 0.16 -2.41 16 19 C -0.11 -1.76 5.98 30.61 0.18 -1.58 16 20 C -0.08 -1.39 5.67 29.73 0.17 -1.22 16 21 C -0.08 -2.01 5.74 -19.86 -0.11 -2.13 16 22 C -0.13 -2.82 9.61 22.36 0.21 -2.61 16 23 C -0.12 -2.91 10.05 22.20 0.22 -2.69 16 24 C -0.14 -4.33 10.05 22.21 0.22 -4.11 16 25 C -0.13 -4.63 8.46 22.36 0.19 -4.44 16 26 C -0.08 -2.47 5.11 -19.86 -0.10 -2.57 16 27 H 0.07 3.69 6.07 -2.39 -0.01 3.68 16 28 H 0.05 2.17 7.67 -2.38 -0.02 2.15 16 29 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 31 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.07 2.36 6.97 -2.39 -0.02 2.34 16 33 H 0.09 2.29 5.51 -2.39 -0.01 2.27 16 34 H 0.05 1.45 8.08 -2.39 -0.02 1.43 16 35 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 36 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.08 1.15 8.10 -2.39 -0.02 1.13 16 38 H 0.10 1.22 8.12 -2.39 -0.02 1.20 16 39 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.15 2.28 8.05 -2.92 -0.02 2.25 16 41 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 42 H 0.12 3.49 8.06 -2.91 -0.02 3.46 16 43 H 0.08 3.55 7.19 -2.91 -0.02 3.53 16 Total: -1.00 -74.55 338.64 5.17 -69.38 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.99 Total: 19.48 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: 4.23 Total: -19.63 kcal Atomic # 7 Polarization: -80.41 SS G_CDS: -2.03 Total: -82.44 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -0.05 Total: -32.49 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -74.55 5.17 -69.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094583.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.130 kcal (2) G-P(sol) polarization free energy of solvation -74.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.65 seconds