Wall clock time and date at job start Tue Mar 31 2020 02:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47519 * 2 1 4 4 C 1.50702 * 109.47105 * 120.00113 * 2 1 3 5 5 H 1.08003 * 119.99649 * 119.99867 * 4 2 1 6 6 C 1.37872 * 119.99889 * 299.99361 * 4 2 1 7 7 N 1.31518 * 120.00067 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 120.00282 * 0.02562 * 6 4 2 9 9 H 1.48502 * 109.47279 * 89.99255 * 8 6 4 10 10 H 1.48496 * 109.47303 * 209.99726 * 8 6 4 11 11 H 1.48501 * 109.46901 * 329.99888 * 8 6 4 12 12 N 1.46500 * 109.46661 * 239.99983 * 2 1 3 13 13 C 1.46497 * 120.00078 * 299.99686 * 12 2 1 14 14 C 1.34783 * 119.99851 * 120.00152 * 12 2 1 15 15 O 1.21279 * 119.99943 * 4.91625 * 14 12 2 16 16 C 1.50695 * 119.99854 * 184.91391 * 14 12 2 17 17 H 1.08996 * 109.25055 * 334.84470 * 16 14 12 18 18 C 1.52734 * 109.22158 * 94.29778 * 16 14 12 19 19 C 1.53324 * 108.38857 * 171.35982 * 18 16 14 20 20 C 1.52733 * 108.38652 * 290.13305 * 19 18 16 21 21 C 1.50633 * 110.58640 * 51.11539 * 20 19 18 22 22 C 1.38908 * 117.75128 * 162.55111 * 21 20 19 23 23 C 1.37938 * 120.54530 * 179.38659 * 22 21 20 24 24 C 1.38267 * 119.76547 * 0.05080 * 23 22 21 25 25 C 1.37929 * 119.77867 * 0.11620 * 24 23 22 26 26 C 1.37673 * 122.56316 * 342.20403 * 21 20 19 27 27 H 1.09000 * 109.47281 * 59.99455 * 1 2 3 28 28 H 1.08999 * 109.47519 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46701 * 300.00009 * 1 2 3 30 30 H 0.96993 * 119.99881 * 180.02562 * 7 6 4 31 31 H 1.09004 * 109.47316 * 264.72213 * 13 12 2 32 32 H 1.08993 * 109.47292 * 24.72904 * 13 12 2 33 33 H 1.09001 * 109.46851 * 144.72775 * 13 12 2 34 34 H 1.08991 * 109.67978 * 291.08719 * 18 16 14 35 35 H 1.08996 * 109.67803 * 51.64030 * 18 16 14 36 36 H 1.09003 * 109.67897 * 170.41179 * 19 18 16 37 37 H 1.09007 * 109.71859 * 49.88061 * 19 18 16 38 38 H 1.08997 * 109.25253 * 290.83002 * 20 19 18 39 39 H 1.09006 * 109.25487 * 171.39722 * 20 19 18 40 40 H 1.08000 * 119.73152 * 359.41119 * 22 21 20 41 41 H 1.07992 * 120.11882 * 180.02562 * 23 22 21 42 42 H 1.08006 * 120.11241 * 180.14069 * 24 23 22 43 43 H 1.08002 * 119.72878 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6994 -0.2393 2.4827 7 7 2.1373 -0.8596 3.5565 8 14 0.6250 1.2791 2.6542 9 1 -0.8027 0.8729 2.6998 10 1 0.9762 1.9951 3.9068 11 1 0.8473 2.1765 1.4920 12 7 2.0182 -0.6906 -1.1962 13 6 1.6643 -2.0932 -1.4280 14 6 2.7931 -0.0356 -2.0834 15 8 3.1598 1.0963 -1.8486 16 6 3.2038 -0.7098 -3.3671 17 1 3.1877 -1.7905 -3.2265 18 6 2.2191 -0.3309 -4.4714 19 6 2.7695 -0.8441 -5.8073 20 6 3.9980 -0.0135 -6.1731 21 6 4.9665 0.0356 -5.0205 22 6 6.2737 0.4206 -5.2900 23 6 7.2052 0.4976 -4.2755 24 6 6.8357 0.1882 -2.9795 25 6 5.5391 -0.1976 -2.7103 26 6 4.6000 -0.2769 -3.7307 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.9027 -0.5284 4.4375 31 1 2.4617 -2.7357 -1.0544 32 1 0.7362 -2.3248 -0.9056 33 1 1.5319 -2.2626 -2.4966 34 1 1.2506 -0.7896 -4.2729 35 1 2.1113 0.7530 -4.5110 36 1 2.0104 -0.7377 -6.5822 37 1 3.0509 -1.8928 -5.7106 38 1 3.6850 1.0002 -6.4231 39 1 4.4899 -0.4606 -7.0370 40 1 6.5631 0.6620 -6.3021 41 1 8.2194 0.7980 -4.4927 42 1 7.5600 0.2488 -2.1805 43 1 5.2516 -0.4395 -1.6978 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094585.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:01 Heat of formation + Delta-G solvation = -13.632999 kcal Electronic energy + Delta-G solvation = -23436.822119 eV Core-core repulsion = 20253.531039 eV Total energy + Delta-G solvation = -3183.291080 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.51208 -38.63893 -35.95235 -35.48004 -32.97359 -32.27792 -30.41087 -30.14338 -28.71392 -26.27003 -25.14231 -24.34851 -22.65948 -22.47209 -21.03735 -19.33414 -18.28553 -17.07162 -16.46290 -16.31759 -15.58398 -15.32441 -15.14870 -14.66337 -14.40142 -13.69001 -13.62394 -13.30366 -13.14360 -12.86560 -12.77615 -12.55244 -12.30223 -12.24806 -11.94844 -11.79654 -11.69149 -11.38748 -11.32160 -11.14103 -11.04566 -10.69781 -10.55648 -10.29794 -10.14490 -9.65302 -9.34332 -8.97928 -8.63974 -8.55271 -8.38150 -7.72214 -6.14823 -4.15261 1.51309 1.57484 3.21998 3.23697 3.36531 3.39052 3.71822 3.99990 4.34850 4.59559 4.66953 4.85017 5.03355 5.05751 5.15691 5.18373 5.24686 5.32709 5.41803 5.50871 5.54454 5.64141 5.71184 5.78844 5.85271 5.93993 5.96541 5.99476 6.17082 6.19408 6.23966 6.26414 6.27332 6.32530 6.48037 6.62864 6.71706 6.81616 6.83137 7.10667 7.19549 7.34920 7.63249 8.18747 8.47322 8.85141 8.92496 9.46443 10.97993 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.022260 B = 0.004926 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.574005 B = 5682.188298 C = 6316.908449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.229 3.771 3 H 0.062 0.938 4 C -0.526 4.526 5 H 0.078 0.922 6 C 0.075 3.925 7 N -0.895 5.895 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.264 1.264 12 N -0.588 5.588 13 C 0.085 3.915 14 C 0.513 3.487 15 O -0.543 6.543 16 C -0.070 4.070 17 H 0.100 0.900 18 C -0.107 4.107 19 C -0.116 4.116 20 C -0.079 4.079 21 C -0.075 4.075 22 C -0.129 4.129 23 C -0.122 4.122 24 C -0.124 4.124 25 C -0.092 4.092 26 C -0.054 4.054 27 H 0.032 0.968 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.265 0.735 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.600 -1.817 -19.221 19.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.127 3.873 3 H 0.079 0.921 4 C -0.564 4.564 5 H 0.096 0.904 6 C -0.127 4.127 7 N -0.533 5.533 8 Si 0.713 3.287 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.189 1.189 12 N -0.319 5.319 13 C -0.059 4.059 14 C 0.299 3.701 15 O -0.420 6.420 16 C -0.092 4.092 17 H 0.118 0.882 18 C -0.145 4.145 19 C -0.153 4.153 20 C -0.116 4.116 21 C -0.075 4.075 22 C -0.147 4.147 23 C -0.140 4.140 24 C -0.142 4.142 25 C -0.110 4.110 26 C -0.054 4.054 27 H 0.052 0.948 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.780 -1.227 -18.862 19.106 hybrid contribution -0.548 0.654 0.522 1.000 sum 2.233 -0.574 -18.340 18.485 Atomic orbital electron populations 1.22468 0.99161 1.01054 0.99243 1.19286 0.89857 0.95198 0.82980 0.92053 1.21154 1.32626 1.14152 0.88465 0.90380 1.24864 0.95685 0.96533 0.95648 1.69875 1.45266 1.40193 0.97957 0.86924 0.80421 0.83907 0.77479 1.20410 1.22141 1.18871 1.47888 1.49478 1.11713 1.22806 1.21635 1.01877 0.82786 0.99594 1.20219 0.78783 0.86652 0.84465 1.90665 1.54789 1.19124 1.77442 1.20287 0.93112 1.01362 0.94395 0.88236 1.21462 0.97490 1.02331 0.93198 1.21537 0.97083 0.99833 0.96890 1.20466 0.94726 1.00840 0.95594 1.19496 0.94555 0.99697 0.93771 1.21013 0.92977 1.01723 0.99003 1.21007 0.99185 1.00654 0.93153 1.21045 0.96310 1.00127 0.96693 1.21252 0.92974 0.97769 0.99045 1.19101 0.93804 0.99802 0.92705 0.94845 0.92507 0.93163 0.92460 0.92929 0.90433 0.92733 0.90902 0.90853 0.91147 0.91392 0.90695 0.90917 0.86522 0.86426 0.86180 0.86024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.45 8.66 37.16 0.32 -3.13 16 2 C 0.23 5.52 2.22 -69.08 -0.15 5.36 16 3 H 0.06 1.66 5.97 -51.93 -0.31 1.35 16 4 C -0.53 -14.53 8.95 -34.44 -0.31 -14.84 16 5 H 0.08 2.32 7.89 -52.48 -0.41 1.91 16 6 C 0.08 2.15 5.45 -17.82 -0.10 2.06 16 7 N -0.90 -27.00 13.96 55.43 0.77 -26.23 16 8 Si 0.88 21.96 24.37 -169.99 -4.14 17.81 16 9 H -0.28 -6.57 6.87 56.52 0.39 -6.18 16 10 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 11 H -0.26 -6.52 6.53 56.52 0.37 -6.15 16 12 N -0.59 -11.98 2.75 -175.27 -0.48 -12.46 16 13 C 0.08 1.36 9.01 59.85 0.54 1.90 16 14 C 0.51 10.22 5.54 -10.98 -0.06 10.16 16 15 O -0.54 -13.03 15.10 5.56 0.08 -12.95 16 16 C -0.07 -1.07 1.85 -93.09 -0.17 -1.24 16 17 H 0.10 1.34 6.24 -51.93 -0.32 1.02 16 18 C -0.11 -1.33 5.20 -26.70 -0.14 -1.47 16 19 C -0.12 -1.12 5.98 -26.70 -0.16 -1.28 16 20 C -0.08 -0.81 5.67 -28.05 -0.16 -0.97 16 21 C -0.08 -1.01 5.74 -104.61 -0.60 -1.61 16 22 C -0.13 -1.60 9.61 -39.44 -0.38 -1.97 16 23 C -0.12 -1.55 10.05 -39.68 -0.40 -1.95 16 24 C -0.12 -1.81 10.05 -39.68 -0.40 -2.21 16 25 C -0.09 -1.56 8.49 -39.45 -0.33 -1.90 16 26 C -0.05 -0.84 5.11 -104.61 -0.53 -1.38 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 1.12 6.67 -51.93 -0.35 0.77 16 29 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 30 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.08 1.25 6.44 -51.93 -0.33 0.91 16 33 H 0.05 0.67 6.23 -51.93 -0.32 0.35 16 34 H 0.07 0.81 7.87 -51.93 -0.41 0.41 16 35 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.62 8.10 -51.92 -0.42 0.20 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.61 8.13 -51.93 -0.42 0.18 16 40 H 0.12 1.12 8.05 -52.49 -0.42 0.70 16 41 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 42 H 0.12 1.56 8.06 -52.48 -0.42 1.13 16 43 H 0.12 2.30 7.22 -52.49 -0.38 1.92 16 LS Contribution 331.40 15.07 4.99 4.99 Total: -1.00 -32.90 331.40 -8.22 -41.12 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.41 Total: 2.18 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -3.03 Total: -14.47 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.29 Total: -38.69 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.08 Total: -12.95 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.14 Total: 17.81 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.90 -8.22 -41.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094585.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.483 kcal (2) G-P(sol) polarization free energy of solvation -32.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds