Wall clock time and date at job start Tue Mar 31 2020 02:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47519 * 2 1 4 4 C 1.50702 * 109.47105 * 120.00113 * 2 1 3 5 5 H 1.08003 * 119.99649 * 119.99867 * 4 2 1 6 6 C 1.37872 * 119.99889 * 299.99361 * 4 2 1 7 7 N 1.31518 * 120.00067 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 120.00282 * 0.02562 * 6 4 2 9 9 H 1.48502 * 109.47279 * 89.99255 * 8 6 4 10 10 H 1.48496 * 109.47303 * 209.99726 * 8 6 4 11 11 H 1.48501 * 109.46901 * 329.99888 * 8 6 4 12 12 N 1.46500 * 109.46661 * 239.99983 * 2 1 3 13 13 C 1.46497 * 120.00078 * 299.99686 * 12 2 1 14 14 C 1.34783 * 119.99851 * 120.00152 * 12 2 1 15 15 O 1.21279 * 119.99943 * 4.91625 * 14 12 2 16 16 C 1.50695 * 119.99854 * 184.91391 * 14 12 2 17 17 H 1.08996 * 109.25055 * 334.84470 * 16 14 12 18 18 C 1.52734 * 109.22158 * 94.29778 * 16 14 12 19 19 C 1.53324 * 108.38857 * 171.35982 * 18 16 14 20 20 C 1.52733 * 108.38652 * 290.13305 * 19 18 16 21 21 C 1.50633 * 110.58640 * 51.11539 * 20 19 18 22 22 C 1.38908 * 117.75128 * 162.55111 * 21 20 19 23 23 C 1.37938 * 120.54530 * 179.38659 * 22 21 20 24 24 C 1.38267 * 119.76547 * 0.05080 * 23 22 21 25 25 C 1.37929 * 119.77867 * 0.11620 * 24 23 22 26 26 C 1.37673 * 122.56316 * 342.20403 * 21 20 19 27 27 H 1.09000 * 109.47281 * 59.99455 * 1 2 3 28 28 H 1.08999 * 109.47519 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46701 * 300.00009 * 1 2 3 30 30 H 0.96993 * 119.99881 * 180.02562 * 7 6 4 31 31 H 1.09004 * 109.47316 * 264.72213 * 13 12 2 32 32 H 1.08993 * 109.47292 * 24.72904 * 13 12 2 33 33 H 1.09001 * 109.46851 * 144.72775 * 13 12 2 34 34 H 1.08991 * 109.67978 * 291.08719 * 18 16 14 35 35 H 1.08996 * 109.67803 * 51.64030 * 18 16 14 36 36 H 1.09003 * 109.67897 * 170.41179 * 19 18 16 37 37 H 1.09007 * 109.71859 * 49.88061 * 19 18 16 38 38 H 1.08997 * 109.25253 * 290.83002 * 20 19 18 39 39 H 1.09006 * 109.25487 * 171.39722 * 20 19 18 40 40 H 1.08000 * 119.73152 * 359.41119 * 22 21 20 41 41 H 1.07992 * 120.11882 * 180.02562 * 23 22 21 42 42 H 1.08006 * 120.11241 * 180.14069 * 24 23 22 43 43 H 1.08002 * 119.72878 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6994 -0.2393 2.4827 7 7 2.1373 -0.8596 3.5565 8 14 0.6250 1.2791 2.6542 9 1 -0.8027 0.8729 2.6998 10 1 0.9762 1.9951 3.9068 11 1 0.8473 2.1765 1.4920 12 7 2.0182 -0.6906 -1.1962 13 6 1.6643 -2.0932 -1.4280 14 6 2.7931 -0.0356 -2.0834 15 8 3.1598 1.0963 -1.8486 16 6 3.2038 -0.7098 -3.3671 17 1 3.1877 -1.7905 -3.2265 18 6 2.2191 -0.3309 -4.4714 19 6 2.7695 -0.8441 -5.8073 20 6 3.9980 -0.0135 -6.1731 21 6 4.9665 0.0356 -5.0205 22 6 6.2737 0.4206 -5.2900 23 6 7.2052 0.4976 -4.2755 24 6 6.8357 0.1882 -2.9795 25 6 5.5391 -0.1976 -2.7103 26 6 4.6000 -0.2769 -3.7307 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.9027 -0.5284 4.4375 31 1 2.4617 -2.7357 -1.0544 32 1 0.7362 -2.3248 -0.9056 33 1 1.5319 -2.2626 -2.4966 34 1 1.2506 -0.7896 -4.2729 35 1 2.1113 0.7530 -4.5110 36 1 2.0104 -0.7377 -6.5822 37 1 3.0509 -1.8928 -5.7106 38 1 3.6850 1.0002 -6.4231 39 1 4.4899 -0.4606 -7.0370 40 1 6.5631 0.6620 -6.3021 41 1 8.2194 0.7980 -4.4927 42 1 7.5600 0.2488 -2.1805 43 1 5.2516 -0.4395 -1.6978 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063094585.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:01 Heat of formation + Delta-G solvation = -33.823528 kcal Electronic energy + Delta-G solvation = -23437.697646 eV Core-core repulsion = 20253.531039 eV Total energy + Delta-G solvation = -3184.166607 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.77011 -40.01794 -37.32082 -36.87406 -34.82449 -33.64345 -32.15460 -31.14031 -29.80746 -27.73615 -27.16761 -25.52343 -23.71928 -23.61051 -22.56808 -20.42199 -19.79517 -18.97676 -18.08050 -17.63981 -17.23199 -16.46840 -16.29742 -16.15769 -15.73976 -15.04104 -14.94879 -14.71465 -14.49709 -14.20931 -14.12536 -14.03777 -13.83374 -13.51577 -13.29025 -13.19643 -13.01655 -12.97366 -12.63507 -12.46133 -12.30268 -12.08554 -11.92122 -11.61008 -11.55032 -11.37949 -11.23072 -10.82942 -10.55176 -9.65530 -9.47586 -9.40092 -8.38230 -6.42752 0.43466 0.47750 1.22217 1.32301 1.40892 1.69995 2.24230 2.24780 2.85731 2.97021 3.49613 3.68643 3.82440 4.02240 4.09023 4.15181 4.19971 4.31708 4.35201 4.40598 4.45509 4.54332 4.55731 4.58006 4.62697 4.71545 4.78926 4.90855 4.95824 5.01602 5.01970 5.05461 5.11465 5.18010 5.28912 5.33000 5.43775 5.46422 5.59407 5.62819 5.71327 5.73070 6.13333 6.18170 6.58721 6.71477 7.18825 7.36056 8.78097 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.022260 B = 0.004926 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.574005 B = 5682.188298 C = 6316.908449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.231 3.769 3 H 0.026 0.974 4 C -0.526 4.526 5 H 0.041 0.959 6 C 0.023 3.977 7 N -0.940 5.940 8 Si 0.942 3.058 9 H -0.249 1.249 10 H -0.295 1.295 11 H -0.265 1.265 12 N -0.596 5.596 13 C 0.081 3.919 14 C 0.507 3.493 15 O -0.594 6.594 16 C -0.060 4.060 17 H 0.116 0.884 18 C -0.105 4.105 19 C -0.109 4.109 20 C -0.080 4.080 21 C -0.077 4.077 22 C -0.126 4.126 23 C -0.120 4.120 24 C -0.141 4.141 25 C -0.127 4.127 26 C -0.076 4.076 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.041 0.959 30 H 0.268 0.732 31 H 0.044 0.956 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.053 0.947 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.154 0.846 41 H 0.149 0.851 42 H 0.124 0.876 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.466 -1.889 -23.171 23.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.127 3.873 3 H 0.044 0.956 4 C -0.564 4.564 5 H 0.060 0.940 6 C -0.176 4.176 7 N -0.579 5.579 8 Si 0.769 3.231 9 H -0.174 1.174 10 H -0.223 1.223 11 H -0.190 1.190 12 N -0.326 5.326 13 C -0.061 4.061 14 C 0.296 3.704 15 O -0.475 6.475 16 C -0.081 4.081 17 H 0.134 0.866 18 C -0.143 4.143 19 C -0.146 4.146 20 C -0.117 4.117 21 C -0.077 4.077 22 C -0.144 4.144 23 C -0.138 4.138 24 C -0.159 4.159 25 C -0.145 4.145 26 C -0.076 4.076 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.119 0.881 34 H 0.108 0.892 35 H 0.072 0.928 36 H 0.117 0.883 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.121 0.879 40 H 0.172 0.828 41 H 0.166 0.834 42 H 0.142 0.858 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.628 -1.341 -22.838 22.935 hybrid contribution -0.038 0.645 1.733 1.849 sum 1.590 -0.697 -21.105 21.177 Atomic orbital electron populations 1.22308 0.96281 1.02472 0.99983 1.18954 0.91974 0.93194 0.83177 0.95610 1.21359 1.31709 1.13004 0.90344 0.94027 1.25657 0.97193 0.99480 0.95285 1.70006 1.47151 1.42172 0.98594 0.85966 0.80066 0.80075 0.76990 1.17449 1.22303 1.19044 1.47972 1.49669 1.13295 1.21701 1.21877 1.01523 0.80076 1.02665 1.21158 0.77383 0.86173 0.85702 1.90622 1.56457 1.21628 1.78759 1.20311 0.93862 1.01557 0.92384 0.86631 1.21529 0.97550 1.01415 0.93800 1.21556 0.97438 1.00058 0.95551 1.20595 0.94432 1.01659 0.94987 1.19944 0.95969 0.98182 0.93651 1.21504 0.92321 0.99990 1.00567 1.21378 1.00922 0.99406 0.92080 1.21222 0.95607 1.00701 0.98363 1.21152 0.94876 1.00663 0.97822 1.19266 0.93570 1.01154 0.93647 0.92335 0.90771 0.94039 0.92243 0.93779 0.90196 0.88075 0.89225 0.92793 0.88278 0.90330 0.90155 0.87947 0.82813 0.83351 0.85813 0.90097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.33 8.66 71.98 0.62 -5.71 16 2 C 0.23 11.40 2.22 44.25 0.10 11.50 16 3 H 0.03 1.46 5.97 -2.39 -0.01 1.45 16 4 C -0.53 -30.37 8.95 25.60 0.23 -30.14 16 5 H 0.04 2.63 7.89 -2.91 -0.02 2.61 16 6 C 0.02 1.32 5.45 84.65 0.46 1.79 16 7 N -0.94 -58.76 13.96 21.45 0.30 -58.46 16 8 Si 0.94 46.06 24.37 68.60 1.67 47.73 16 9 H -0.25 -11.03 6.87 99.48 0.68 -10.35 16 10 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 11 H -0.27 -12.96 6.53 99.48 0.65 -12.31 16 12 N -0.60 -24.78 2.75 -826.81 -2.28 -27.06 16 13 C 0.08 2.54 9.01 127.77 1.15 3.69 16 14 C 0.51 20.86 5.54 87.65 0.49 21.34 16 15 O -0.59 -30.16 15.10 -3.03 -0.05 -30.20 16 16 C -0.06 -1.79 1.85 -12.40 -0.02 -1.81 16 17 H 0.12 2.96 6.24 -2.39 -0.01 2.94 16 18 C -0.11 -2.34 5.20 30.61 0.16 -2.18 16 19 C -0.11 -1.62 5.98 30.61 0.18 -1.43 16 20 C -0.08 -1.30 5.67 29.74 0.17 -1.13 16 21 C -0.08 -1.89 5.74 -19.86 -0.11 -2.00 16 22 C -0.13 -2.72 9.61 22.36 0.21 -2.51 16 23 C -0.12 -2.84 10.05 22.21 0.22 -2.62 16 24 C -0.14 -4.27 10.05 22.20 0.22 -4.05 16 25 C -0.13 -4.58 8.49 22.36 0.19 -4.39 16 26 C -0.08 -2.38 5.11 -19.86 -0.10 -2.48 16 27 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.07 2.79 6.67 -2.39 -0.02 2.77 16 29 H 0.04 1.79 3.27 -2.39 -0.01 1.78 16 30 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 31 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 32 H 0.08 2.47 6.44 -2.39 -0.02 2.45 16 33 H 0.10 2.21 6.23 -2.39 -0.01 2.20 16 34 H 0.09 1.68 7.87 -2.39 -0.02 1.66 16 35 H 0.05 1.42 8.08 -2.39 -0.02 1.40 16 36 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.08 1.05 8.10 -2.38 -0.02 1.03 16 38 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.10 1.12 8.13 -2.38 -0.02 1.10 16 40 H 0.15 2.17 8.05 -2.91 -0.02 2.14 16 41 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 42 H 0.12 3.44 8.06 -2.91 -0.02 3.42 16 43 H 0.08 3.45 7.22 -2.91 -0.02 3.43 16 Total: -1.00 -77.65 331.40 4.74 -72.91 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 0.92 Total: 17.22 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: 4.17 Total: -22.14 kcal Atomic # 7 Polarization: -83.54 SS G_CDS: -1.98 Total: -85.51 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.05 Total: -30.20 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.67 Total: 47.73 kcal Total: -77.65 4.74 -72.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094585.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.083 kcal (2) G-P(sol) polarization free energy of solvation -77.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds