Wall clock time and date at job start Tue Mar 31 2020 04:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86797 * 120.00075 * 2 1 4 4 H 1.48499 * 109.46957 * 269.99513 * 3 2 1 5 5 H 1.48489 * 109.47194 * 29.99708 * 3 2 1 6 6 H 1.48504 * 109.46964 * 150.00139 * 3 2 1 7 7 C 1.38953 * 119.99534 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00011 * 197.98750 * 7 2 1 9 9 N 1.37101 * 119.99989 * 17.99492 * 7 2 1 10 10 C 1.34774 * 120.00263 * 44.48104 * 9 7 2 11 11 O 1.21290 * 120.00001 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99885 * 179.97438 * 10 9 7 13 13 N 1.46500 * 109.47037 * 180.02562 * 12 10 9 14 14 C 1.46456 * 126.08458 * 85.00375 * 13 12 10 15 15 C 1.53198 * 113.70630 * 181.68239 * 14 13 12 16 16 C 1.55562 * 106.23872 * 332.44831 * 15 14 13 17 17 S 1.67290 * 126.08376 * 264.95756 * 13 12 10 18 18 O 1.42104 * 105.40504 * 85.07650 * 17 13 12 19 19 O 1.42093 * 105.40983 * 314.81520 * 17 13 12 20 20 C 1.46506 * 119.99721 * 224.48473 * 9 7 2 21 21 C 1.53003 * 117.49565 * 3.27047 * 20 9 7 22 22 C 1.53003 * 117.49795 * 294.61345 * 20 9 7 23 23 H 0.96997 * 119.99988 * 354.97023 * 1 2 3 24 24 H 1.08998 * 109.47446 * 60.00264 * 12 10 9 25 25 H 1.09005 * 109.47386 * 299.99886 * 12 10 9 26 26 H 1.08998 * 108.64690 * 60.56558 * 14 13 12 27 27 H 1.09003 * 108.63954 * 302.78671 * 14 13 12 28 28 H 1.08997 * 110.10151 * 213.25344 * 15 14 13 29 29 H 1.08999 * 110.10219 * 91.64021 * 15 14 13 30 30 H 1.09005 * 111.36740 * 154.59323 * 16 15 14 31 31 H 1.08998 * 111.36718 * 279.38758 * 16 15 14 32 32 H 1.08999 * 115.55077 * 148.94576 * 20 9 7 33 33 H 1.08991 * 117.50085 * 0.02562 * 21 20 9 34 34 H 1.09003 * 117.49123 * 145.02019 * 21 20 9 35 35 H 1.08996 * 117.49676 * 214.98563 * 22 20 9 36 36 H 1.09000 * 117.49798 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6526 0.6999 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 3.0492 -1.2262 0.2894 9 7 1.3735 -2.3618 -0.3658 10 6 0.5765 -2.3787 -1.4525 11 8 0.4217 -1.3692 -2.1067 12 6 -0.1213 -3.6522 -1.8553 13 7 -0.9208 -3.4112 -3.0590 14 6 -0.4375 -3.4642 -4.4405 15 6 -1.5088 -3.1240 -5.4814 16 6 -2.8736 -3.5128 -4.8440 17 16 -2.5486 -3.0274 -3.1002 18 8 -2.6083 -1.6175 -2.9331 19 8 -3.1704 -3.9211 -2.1871 20 6 1.5609 -3.5813 0.4242 21 6 2.4158 -3.4792 1.6891 22 6 2.9615 -4.1968 0.4520 23 1 -0.4850 0.8368 0.0736 24 1 -0.7729 -3.9813 -1.0459 25 1 0.6207 -4.4238 -2.0610 26 1 -0.0635 -4.4683 -4.6406 27 1 0.3885 -2.7610 -4.5479 28 1 -1.3429 -3.6999 -6.3918 29 1 -1.4897 -2.0571 -5.7037 30 1 -3.6914 -2.9328 -5.2719 31 1 -3.0615 -4.5830 -4.9299 32 1 0.7110 -4.2634 0.4449 33 1 2.8383 -2.5047 1.9336 34 1 2.1283 -4.0944 2.5417 35 1 3.0328 -5.2837 0.4911 36 1 3.7432 -3.6946 -0.1179 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065894762.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:58 Heat of formation + Delta-G solvation = -40.522191 kcal Electronic energy + Delta-G solvation = -22195.931085 eV Core-core repulsion = 18809.825853 eV Total energy + Delta-G solvation = -3386.105232 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 4.34 seconds Orbital eigenvalues (eV) -38.60684 -37.07302 -36.56189 -35.81973 -35.37987 -33.02601 -32.33559 -30.82046 -27.67990 -25.89044 -24.23002 -21.84520 -21.65275 -21.13238 -19.59630 -18.36484 -16.90024 -16.70287 -16.29600 -15.98137 -15.48063 -14.90307 -14.55098 -14.28600 -14.15541 -13.65636 -13.56329 -13.27660 -12.96201 -12.69450 -12.28341 -11.76971 -11.65379 -11.58090 -11.50889 -11.30601 -11.02659 -10.85968 -10.81838 -10.71179 -10.39972 -10.25488 -10.09809 -9.93190 -9.70281 -9.01052 -8.54410 -7.72425 -6.93404 -6.00451 -3.78121 0.51109 2.82270 3.36366 3.42979 3.46411 3.90256 4.02672 4.18094 4.33778 4.38183 4.66240 4.80124 4.92644 5.02315 5.15317 5.35673 5.40908 5.47852 5.59857 5.65815 5.72604 5.80892 5.86401 5.92924 6.04623 6.10235 6.24202 6.38154 6.49104 6.74218 6.92317 6.98349 7.70268 8.35926 9.14185 9.25380 9.74055 10.36844 11.08097 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.018165 B = 0.006751 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.091088 B = 4146.353660 C = 4913.522944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.352 4.352 8 H 0.076 0.924 9 N -0.430 5.430 10 C 0.455 3.545 11 O -0.508 6.508 12 C 0.142 3.858 13 N -0.963 5.963 14 C 0.085 3.915 15 C -0.120 4.120 16 C -0.603 4.603 17 S 2.564 3.436 18 O -0.920 6.920 19 O -0.967 6.967 20 C 0.070 3.930 21 C -0.173 4.173 22 C -0.208 4.208 23 H 0.266 0.734 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.976 -10.876 -8.226 13.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.138 4.138 3 Si 0.739 3.261 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.479 4.479 8 H 0.094 0.906 9 N -0.152 5.152 10 C 0.240 3.760 11 O -0.384 6.384 12 C 0.014 3.986 13 N -0.803 5.803 14 C -0.042 4.042 15 C -0.159 4.159 16 C -0.733 4.733 17 S 2.658 3.342 18 O -0.909 6.909 19 O -0.957 6.957 20 C -0.036 4.036 21 C -0.210 4.210 22 C -0.247 4.247 23 H 0.076 0.924 24 H 0.111 0.889 25 H 0.108 0.892 26 H 0.085 0.915 27 H 0.102 0.898 28 H 0.122 0.878 29 H 0.113 0.887 30 H 0.153 0.847 31 H 0.154 0.846 32 H 0.120 0.880 33 H 0.125 0.875 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.797 -9.831 -7.830 12.875 hybrid contribution 0.639 0.498 -0.488 0.946 sum -2.159 -9.332 -8.318 12.686 Atomic orbital electron populations 1.69807 1.06401 1.27591 1.42015 1.25265 0.94795 0.99320 0.94460 0.86232 0.79157 0.82488 0.78200 1.20447 1.21366 1.20038 1.18790 0.94279 0.83747 1.51050 0.90594 1.42812 1.44385 1.06920 1.21128 1.20412 0.83854 0.89672 0.82084 1.90572 1.61256 1.33988 1.52552 1.20965 0.95223 0.97751 0.84658 1.56437 1.26967 1.88094 1.08836 1.21448 0.98912 1.02980 0.80844 1.22350 0.89762 1.04390 0.99439 1.30831 1.05133 1.11621 1.25674 1.06794 0.74609 0.75673 0.77123 1.93730 1.84705 1.28990 1.83522 1.93551 1.75446 1.66540 1.60168 1.21760 0.92524 0.91767 0.97547 1.23056 1.04439 1.02462 0.91057 1.23324 0.99749 0.98383 1.03214 0.92412 0.88860 0.89178 0.91509 0.89849 0.87752 0.88711 0.84744 0.84591 0.88030 0.87462 0.89818 0.89818 0.89143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -25.61 11.74 55.50 0.65 -24.96 16 2 C 0.07 2.12 4.39 -17.47 -0.08 2.04 16 3 Si 0.91 22.59 29.59 -169.99 -5.03 17.56 16 4 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.35 -9.71 7.91 -14.93 -0.12 -9.83 16 8 H 0.08 2.03 7.27 -52.48 -0.38 1.64 16 9 N -0.43 -10.81 2.83 -107.72 -0.31 -11.12 16 10 C 0.45 11.59 7.03 -10.99 -0.08 11.51 16 11 O -0.51 -15.06 14.20 5.55 0.08 -14.98 16 12 C 0.14 2.76 5.37 -5.20 -0.03 2.73 16 13 N -0.96 -17.02 2.82 -115.58 -0.33 -17.35 16 14 C 0.08 1.14 6.84 -3.96 -0.03 1.11 16 15 C -0.12 -1.24 6.62 -25.27 -0.17 -1.41 16 16 C -0.60 -6.30 7.66 38.52 0.29 -6.01 16 17 S 2.56 44.82 6.19 -107.50 -0.67 44.15 16 18 O -0.92 -21.12 18.14 -57.37 -1.04 -22.16 16 19 O -0.97 -18.90 17.85 -57.37 -1.02 -19.93 16 20 C 0.07 1.40 5.87 -67.92 -0.40 1.00 16 21 C -0.17 -3.11 9.80 -26.69 -0.26 -3.37 16 22 C -0.21 -3.46 10.36 -26.69 -0.28 -3.74 16 23 H 0.27 8.00 8.32 -40.82 -0.34 7.66 16 24 H 0.09 1.77 7.35 -51.93 -0.38 1.39 16 25 H 0.09 1.42 8.11 -51.93 -0.42 1.00 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 28 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.13 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.14 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.10 1.79 6.96 -51.93 -0.36 1.43 16 33 H 0.11 2.16 6.73 -51.93 -0.35 1.81 16 34 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 LS Contribution 314.56 15.07 4.74 4.74 Total: -1.00 -39.38 314.56 -8.89 -48.28 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -4.83 Total: 1.73 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -1.14 Total: -5.96 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: 0.02 Total: -53.43 kcal Atomic # 8 Polarization: -55.08 SS G_CDS: -1.99 Total: -57.07 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.03 Total: 17.56 kcal Atomic # 16 Polarization: 44.82 SS G_CDS: -0.67 Total: 44.15 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -39.38 -8.89 -48.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065894762.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.753 kcal (2) G-P(sol) polarization free energy of solvation -39.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.34 seconds