Wall clock time and date at job start Tue Mar 31 2020 04:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86797 * 120.00075 * 2 1 4 4 H 1.48499 * 109.46957 * 269.99513 * 3 2 1 5 5 H 1.48489 * 109.47194 * 29.99708 * 3 2 1 6 6 H 1.48504 * 109.46964 * 150.00139 * 3 2 1 7 7 C 1.38953 * 119.99534 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00011 * 197.98750 * 7 2 1 9 9 N 1.37101 * 119.99989 * 17.99492 * 7 2 1 10 10 C 1.34774 * 120.00263 * 44.48104 * 9 7 2 11 11 O 1.21290 * 120.00001 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99885 * 179.97438 * 10 9 7 13 13 N 1.46500 * 109.47037 * 180.02562 * 12 10 9 14 14 C 1.46456 * 126.08458 * 85.00375 * 13 12 10 15 15 C 1.53198 * 113.70630 * 181.68239 * 14 13 12 16 16 C 1.55562 * 106.23872 * 332.44831 * 15 14 13 17 17 S 1.67290 * 126.08376 * 264.95756 * 13 12 10 18 18 O 1.42104 * 105.40504 * 85.07650 * 17 13 12 19 19 O 1.42093 * 105.40983 * 314.81520 * 17 13 12 20 20 C 1.46506 * 119.99721 * 224.48473 * 9 7 2 21 21 C 1.53003 * 117.49565 * 3.27047 * 20 9 7 22 22 C 1.53003 * 117.49795 * 294.61345 * 20 9 7 23 23 H 0.96997 * 119.99988 * 354.97023 * 1 2 3 24 24 H 1.08998 * 109.47446 * 60.00264 * 12 10 9 25 25 H 1.09005 * 109.47386 * 299.99886 * 12 10 9 26 26 H 1.08998 * 108.64690 * 60.56558 * 14 13 12 27 27 H 1.09003 * 108.63954 * 302.78671 * 14 13 12 28 28 H 1.08997 * 110.10151 * 213.25344 * 15 14 13 29 29 H 1.08999 * 110.10219 * 91.64021 * 15 14 13 30 30 H 1.09005 * 111.36740 * 154.59323 * 16 15 14 31 31 H 1.08998 * 111.36718 * 279.38758 * 16 15 14 32 32 H 1.08999 * 115.55077 * 148.94576 * 20 9 7 33 33 H 1.08991 * 117.50085 * 0.02562 * 21 20 9 34 34 H 1.09003 * 117.49123 * 145.02019 * 21 20 9 35 35 H 1.08996 * 117.49676 * 214.98563 * 22 20 9 36 36 H 1.09000 * 117.49798 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6526 0.6999 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 3.0492 -1.2262 0.2894 9 7 1.3735 -2.3618 -0.3658 10 6 0.5765 -2.3787 -1.4525 11 8 0.4217 -1.3692 -2.1067 12 6 -0.1213 -3.6522 -1.8553 13 7 -0.9208 -3.4112 -3.0590 14 6 -0.4375 -3.4642 -4.4405 15 6 -1.5088 -3.1240 -5.4814 16 6 -2.8736 -3.5128 -4.8440 17 16 -2.5486 -3.0274 -3.1002 18 8 -2.6083 -1.6175 -2.9331 19 8 -3.1704 -3.9211 -2.1871 20 6 1.5609 -3.5813 0.4242 21 6 2.4158 -3.4792 1.6891 22 6 2.9615 -4.1968 0.4520 23 1 -0.4850 0.8368 0.0736 24 1 -0.7729 -3.9813 -1.0459 25 1 0.6207 -4.4238 -2.0610 26 1 -0.0635 -4.4683 -4.6406 27 1 0.3885 -2.7610 -4.5479 28 1 -1.3429 -3.6999 -6.3918 29 1 -1.4897 -2.0571 -5.7037 30 1 -3.6914 -2.9328 -5.2719 31 1 -3.0615 -4.5830 -4.9299 32 1 0.7110 -4.2634 0.4449 33 1 2.8383 -2.5047 1.9336 34 1 2.1283 -4.0944 2.5417 35 1 3.0328 -5.2837 0.4911 36 1 3.7432 -3.6946 -0.1179 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065894762.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:56 Heat of formation + Delta-G solvation = -72.700968 kcal Electronic energy + Delta-G solvation = -22197.326462 eV Core-core repulsion = 18809.825853 eV Total energy + Delta-G solvation = -3387.500608 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -40.39170 -38.34745 -37.99059 -37.38661 -36.82050 -34.82492 -33.82858 -32.75116 -29.14868 -27.22988 -26.00916 -23.15468 -22.85985 -22.70763 -21.39745 -19.78711 -18.50831 -18.06727 -17.85431 -17.55755 -16.91193 -16.66504 -16.03313 -15.86772 -15.54610 -15.32769 -15.07813 -14.60548 -14.13227 -14.02009 -13.71123 -13.58788 -13.11260 -13.05706 -12.97960 -12.87637 -12.79003 -12.52762 -12.24157 -12.17885 -12.07193 -11.91227 -11.62956 -11.34606 -11.19157 -10.77236 -10.36626 -9.49300 -8.91074 -8.17153 -5.96752 -0.70875 1.32501 1.40866 1.46645 1.55841 2.25116 2.42960 2.74721 2.99822 3.13608 3.18604 3.36274 3.42384 3.68760 4.00782 4.08657 4.12015 4.21669 4.31253 4.43168 4.43638 4.55695 4.60741 4.77563 4.89583 4.93559 5.04228 5.07507 5.17486 5.31687 5.47744 5.52282 5.67035 6.21244 7.06318 7.26454 7.73507 8.41124 8.90421 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.018165 B = 0.006751 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.091088 B = 4146.353660 C = 4913.522944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.016 3.984 3 Si 0.969 3.031 4 H -0.292 1.292 5 H -0.286 1.286 6 H -0.249 1.249 7 C -0.351 4.351 8 H 0.080 0.920 9 N -0.449 5.449 10 C 0.437 3.563 11 O -0.564 6.564 12 C 0.152 3.848 13 N -0.971 5.971 14 C 0.073 3.927 15 C -0.118 4.118 16 C -0.537 4.537 17 S 2.522 3.478 18 O -1.002 7.002 19 O -1.004 7.004 20 C 0.036 3.964 21 C -0.174 4.174 22 C -0.171 4.171 23 H 0.255 0.745 24 H 0.092 0.908 25 H 0.132 0.868 26 H 0.110 0.890 27 H 0.053 0.947 28 H 0.160 0.840 29 H 0.082 0.918 30 H 0.167 0.833 31 H 0.181 0.819 32 H 0.125 0.875 33 H 0.079 0.921 34 H 0.116 0.884 35 H 0.129 0.871 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.221 -14.191 -10.192 17.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.190 4.190 3 Si 0.795 3.205 4 H -0.219 1.219 5 H -0.212 1.212 6 H -0.173 1.173 7 C -0.479 4.479 8 H 0.097 0.903 9 N -0.171 5.171 10 C 0.224 3.776 11 O -0.444 6.444 12 C 0.023 3.977 13 N -0.811 5.811 14 C -0.053 4.053 15 C -0.157 4.157 16 C -0.673 4.673 17 S 2.624 3.376 18 O -0.991 6.991 19 O -0.994 6.994 20 C -0.069 4.069 21 C -0.212 4.212 22 C -0.209 4.209 23 H 0.064 0.936 24 H 0.110 0.890 25 H 0.150 0.850 26 H 0.128 0.872 27 H 0.071 0.929 28 H 0.178 0.822 29 H 0.101 0.899 30 H 0.185 0.815 31 H 0.199 0.801 32 H 0.142 0.858 33 H 0.097 0.903 34 H 0.134 0.866 35 H 0.147 0.853 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.991 -13.163 -9.701 16.473 hybrid contribution 0.468 1.393 0.020 1.470 sum -1.523 -11.770 -9.681 15.316 Atomic orbital electron populations 1.69968 1.08138 1.27363 1.45325 1.26131 0.95386 1.02842 0.94625 0.85326 0.79058 0.78705 0.77430 1.21902 1.21166 1.17275 1.19068 0.94527 0.85073 1.49215 0.90258 1.43094 1.44150 1.07953 1.21945 1.21569 0.83373 0.91160 0.81535 1.90526 1.63026 1.36465 1.54351 1.20826 0.95792 0.95246 0.85833 1.56438 1.27114 1.87513 1.10057 1.21820 0.99373 1.04643 0.79415 1.22551 0.88128 1.04911 1.00123 1.30532 1.06512 1.14677 1.15560 1.07671 0.74703 0.74144 0.81040 1.93644 1.85501 1.33372 1.86554 1.93488 1.75697 1.66091 1.64110 1.22090 0.95302 0.90684 0.98802 1.23114 1.03807 1.02131 0.92149 1.23331 0.96330 1.00538 1.00749 0.93594 0.89014 0.84992 0.87216 0.92885 0.82207 0.89897 0.81495 0.80125 0.85763 0.90266 0.86612 0.85341 0.90559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -57.57 11.74 21.66 0.25 -57.31 16 2 C 0.02 0.97 4.39 84.93 0.37 1.34 16 3 Si 0.97 48.37 29.59 68.60 2.03 50.40 16 4 H -0.29 -15.07 7.11 99.48 0.71 -14.37 16 5 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.25 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.35 -19.99 7.91 84.04 0.66 -19.32 16 8 H 0.08 4.32 7.27 -2.91 -0.02 4.30 16 9 N -0.45 -23.10 2.83 -613.11 -1.74 -24.84 16 10 C 0.44 23.03 7.03 87.66 0.62 23.65 16 11 O -0.56 -35.41 14.20 -3.06 -0.04 -35.45 16 12 C 0.15 5.88 5.37 85.63 0.46 6.34 16 13 N -0.97 -33.93 2.82 -519.59 -1.47 -35.39 16 14 C 0.07 1.79 6.84 86.45 0.59 2.38 16 15 C -0.12 -1.92 6.62 31.54 0.21 -1.71 16 16 C -0.54 -8.66 7.66 72.86 0.56 -8.10 16 17 S 2.52 88.98 6.19 -56.49 -0.35 88.63 16 18 O -1.00 -49.32 18.14 -127.81 -2.32 -51.64 16 19 O -1.00 -39.99 17.85 -127.81 -2.28 -42.28 16 20 C 0.04 1.40 5.87 44.99 0.26 1.66 16 21 C -0.17 -6.02 9.80 30.62 0.30 -5.71 16 22 C -0.17 -5.19 10.36 30.62 0.32 -4.88 16 23 H 0.26 16.52 8.32 -92.71 -0.77 15.75 16 24 H 0.09 3.54 7.35 -2.39 -0.02 3.52 16 25 H 0.13 3.87 8.11 -2.38 -0.02 3.85 16 26 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.16 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.17 1.87 8.14 -2.38 -0.02 1.85 16 31 H 0.18 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.12 4.18 6.96 -2.39 -0.02 4.16 16 33 H 0.08 3.19 6.73 -2.39 -0.02 3.17 16 34 H 0.12 3.22 8.14 -2.39 -0.02 3.20 16 35 H 0.13 2.82 8.14 -2.39 -0.02 2.80 16 36 H 0.08 2.56 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -97.31 314.56 -0.47 -97.78 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 1.08 Total: 14.46 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: 4.35 Total: -4.35 kcal Atomic # 7 Polarization: -114.60 SS G_CDS: -2.95 Total: -117.55 kcal Atomic # 8 Polarization: -124.72 SS G_CDS: -4.64 Total: -129.36 kcal Atomic # 14 Polarization: 48.37 SS G_CDS: 2.03 Total: 50.40 kcal Atomic # 16 Polarization: 88.98 SS G_CDS: -0.35 Total: 88.63 kcal Total: -97.31 -0.47 -97.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065894762.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.081 kcal (2) G-P(sol) polarization free energy of solvation -97.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds