Wall clock time and date at job start Tue Mar 31 2020 03:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47271 * 67.62102 * 3 2 1 5 5 C 1.37098 * 120.00156 * 263.95242 * 4 3 2 6 6 H 1.07998 * 120.00309 * 200.21975 * 5 4 3 7 7 C 1.38956 * 120.00073 * 20.21303 * 5 4 3 8 8 N 1.31418 * 119.99453 * 21.42962 * 7 5 4 9 9 Si 1.86797 * 120.00210 * 201.42803 * 7 5 4 10 10 H 1.48496 * 109.46952 * 90.00029 * 9 7 5 11 11 H 1.48505 * 109.47013 * 210.00565 * 9 7 5 12 12 H 1.48503 * 109.46776 * 330.00077 * 9 7 5 13 13 C 1.34774 * 120.00073 * 83.95096 * 4 3 2 14 14 O 1.21287 * 120.00215 * 180.02562 * 13 4 3 15 15 C 1.50706 * 119.99652 * 359.97438 * 13 4 3 16 16 O 1.42908 * 109.46686 * 179.97438 * 15 13 4 17 17 C 1.35600 * 116.99478 * 180.02562 * 16 15 13 18 18 C 1.38692 * 120.17148 * 359.95144 * 17 16 15 19 19 C 1.38052 * 120.10985 * 180.02562 * 18 17 16 20 20 C 1.38630 * 120.45360 * 0.02562 * 19 18 17 21 21 C 1.37672 * 120.34160 * 0.02708 * 20 19 18 22 22 C 1.40023 * 119.88177 * 359.96798 * 21 20 19 23 23 C 1.46776 * 120.22532 * 180.02562 * 22 21 20 24 24 O 1.21297 * 120.00165 * 0.02562 * 23 22 21 25 25 H 1.09005 * 109.47114 * 307.62335 * 3 2 1 26 26 H 1.08997 * 109.46957 * 187.62553 * 3 2 1 27 27 H 0.96996 * 119.99758 * 179.97438 * 8 7 5 28 28 H 1.09000 * 109.47002 * 60.00433 * 15 13 4 29 29 H 1.08992 * 109.47190 * 299.99822 * 15 13 4 30 30 H 1.08000 * 119.94581 * 0.05142 * 18 17 16 31 31 H 1.07997 * 119.77604 * 180.28599 * 19 18 17 32 32 H 1.08005 * 119.82915 * 179.97438 * 20 19 18 33 33 H 1.08000 * 120.06454 * 179.97438 * 21 20 19 34 34 H 1.08004 * 120.00066 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0966 -0.5250 -1.2772 5 6 3.4436 -1.8468 -1.3867 6 1 4.0931 -2.1701 -2.1868 7 6 2.9599 -2.7706 -0.4683 8 7 1.8770 -2.5015 0.2260 9 14 3.8487 -4.3948 -0.2207 10 1 4.8707 -4.2421 0.8457 11 1 2.8703 -5.4388 0.1770 12 1 4.5114 -4.7946 -1.4881 13 6 3.2049 0.2908 -2.3445 14 8 3.6090 -0.1445 -3.4020 15 6 2.8228 1.7437 -2.2242 16 8 3.0249 2.3948 -3.4802 17 6 2.7271 3.7162 -3.5433 18 6 2.2487 4.3773 -2.4219 19 6 1.9455 5.7225 -2.4877 20 6 2.1149 6.4238 -3.6715 21 6 2.5876 5.7859 -4.7962 22 6 2.8997 4.4218 -4.7453 23 6 3.4046 3.7343 -5.9398 24 8 3.5532 4.3480 -6.9755 25 1 2.9716 -0.6266 0.8140 26 1 2.9708 1.0194 0.1364 27 1 1.5391 -3.1464 0.8668 28 1 3.4421 2.2205 -1.4644 29 1 1.7737 1.8210 -1.9390 30 1 2.1136 3.8390 -1.4954 31 1 1.5777 6.2330 -1.6100 32 1 1.8741 7.4759 -3.7118 33 1 2.7175 6.3365 -5.7162 34 1 3.6438 2.6820 -5.8965 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066645069.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:46 Heat of formation + Delta-G solvation = -33.181592 kcal Electronic energy + Delta-G solvation = -21810.107225 eV Core-core repulsion = 18288.876354 eV Total energy + Delta-G solvation = -3521.230871 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.52035 -39.14034 -38.35406 -37.14260 -35.88418 -34.47924 -32.12898 -31.52482 -30.36512 -28.39574 -27.50713 -24.94894 -24.66613 -22.30328 -21.09137 -19.59041 -18.40352 -18.10081 -16.85546 -16.67800 -16.44892 -15.95913 -15.83867 -15.15989 -14.82852 -14.32642 -14.20362 -14.18758 -14.08001 -13.49900 -13.32397 -13.17852 -12.55403 -12.42382 -12.08662 -11.92940 -11.80161 -11.48210 -11.30458 -11.27964 -11.06321 -10.72801 -10.50147 -10.47288 -9.66459 -9.41696 -9.19731 -8.80429 -8.36582 -8.21462 -6.65421 -4.17404 0.59345 1.27408 2.47704 2.82194 3.00058 3.16338 3.21518 3.36513 3.62455 3.69443 3.78956 4.01005 4.34094 4.53559 4.67382 4.71810 4.77735 4.93247 4.98503 5.10906 5.17935 5.21929 5.41033 5.44728 5.59380 5.70941 5.84702 5.98013 6.18699 6.27579 6.30382 6.54006 7.19296 7.34088 7.51476 7.71284 8.10384 8.55809 8.81328 8.99507 9.49837 10.40827 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.024083 B = 0.004136 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.376085 B = 6768.573957 C = 7669.479388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C 0.239 3.761 3 C 0.218 3.782 4 N -0.435 5.435 5 C -0.316 4.316 6 H 0.111 0.889 7 C 0.035 3.965 8 N -0.874 5.874 9 Si 0.931 3.069 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.267 1.267 13 C 0.456 3.544 14 O -0.548 6.548 15 C 0.043 3.957 16 O -0.278 6.278 17 C 0.189 3.811 18 C -0.228 4.228 19 C -0.043 4.043 20 C -0.181 4.181 21 C -0.023 4.023 22 C -0.228 4.228 23 C 0.392 3.608 24 O -0.476 6.476 25 H 0.129 0.871 26 H 0.084 0.916 27 H 0.276 0.724 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.136 0.864 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.137 0.863 34 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.625 13.531 1.585 13.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.143 5.143 2 C -0.080 4.080 3 C 0.090 3.910 4 N -0.157 5.157 5 C -0.442 4.442 6 H 0.129 0.871 7 C -0.170 4.170 8 N -0.512 5.512 9 Si 0.757 3.243 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.192 1.192 13 C 0.243 3.757 14 O -0.428 6.428 15 C -0.036 4.036 16 O -0.188 6.188 17 C 0.141 3.859 18 C -0.246 4.246 19 C -0.061 4.061 20 C -0.199 4.199 21 C -0.041 4.041 22 C -0.230 4.230 23 C 0.253 3.747 24 O -0.351 6.351 25 H 0.147 0.853 26 H 0.102 0.898 27 H 0.086 0.914 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.154 0.846 31 H 0.147 0.853 32 H 0.145 0.855 33 H 0.155 0.845 34 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.208 13.359 0.479 13.422 hybrid contribution 0.374 -0.915 0.888 1.329 sum 1.582 12.444 1.367 12.618 Atomic orbital electron populations 1.80928 1.13476 1.11824 1.08051 1.29250 0.95328 0.90422 0.93003 1.18767 0.81787 0.99312 0.91102 1.43530 1.56686 1.09377 1.06116 1.19744 1.28105 0.81148 1.15250 0.87098 1.25340 0.94686 0.99879 0.97065 1.69833 1.17840 1.37771 1.25713 0.85835 0.78950 0.80343 0.79159 1.19987 1.21007 1.19155 1.19500 0.85369 0.86150 0.84731 1.90605 1.48914 1.76305 1.27001 1.22797 1.02100 0.94128 0.84528 1.86096 1.79867 1.18311 1.34570 1.19390 0.90149 0.83187 0.93211 1.21343 1.08087 0.96479 0.98716 1.21193 0.93863 0.93264 0.97816 1.21009 1.05118 1.00569 0.93190 1.21276 0.91964 0.92250 0.98649 1.20307 1.12490 0.95217 0.94972 1.23934 0.71551 0.94403 0.84839 1.90477 1.41782 1.70560 1.32292 0.85286 0.89795 0.91385 0.89578 0.89898 0.84590 0.85300 0.85470 0.84505 0.86802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.21 18.54 42.15 0.78 -9.43 16 2 C 0.24 4.78 12.82 -20.76 -0.27 4.51 16 3 C 0.22 3.81 4.91 -6.83 -0.03 3.78 16 4 N -0.43 -9.33 2.60 -117.93 -0.31 -9.64 16 5 C -0.32 -7.63 9.27 -14.93 -0.14 -7.76 16 6 H 0.11 2.85 7.43 -52.49 -0.39 2.46 16 7 C 0.03 0.81 4.84 -17.46 -0.08 0.73 16 8 N -0.87 -20.81 9.58 55.50 0.53 -20.28 16 9 Si 0.93 18.61 29.60 -169.99 -5.03 13.57 16 10 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 11 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 12 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 13 C 0.46 9.65 7.64 -10.98 -0.08 9.56 16 14 O -0.55 -13.84 16.17 -14.36 -0.23 -14.07 16 15 C 0.04 0.68 3.83 36.01 0.14 0.82 16 16 O -0.28 -4.58 8.85 -38.40 -0.34 -4.92 16 17 C 0.19 2.63 6.71 -38.58 -0.26 2.38 16 18 C -0.23 -2.62 9.03 -39.48 -0.36 -2.97 16 19 C -0.04 -0.42 10.03 -39.51 -0.40 -0.81 16 20 C -0.18 -1.76 10.02 -39.64 -0.40 -2.16 16 21 C -0.02 -0.27 9.59 -39.12 -0.38 -0.64 16 22 C -0.23 -3.11 5.88 -104.95 -0.62 -3.73 16 23 C 0.39 5.70 11.19 34.18 0.38 6.08 16 24 O -0.48 -7.85 17.16 5.54 0.10 -7.75 16 25 H 0.13 2.31 6.63 -51.93 -0.34 1.96 16 26 H 0.08 1.02 6.69 -51.93 -0.35 0.67 16 27 H 0.28 6.39 8.31 -40.82 -0.34 6.05 16 28 H 0.09 1.03 6.94 -51.93 -0.36 0.67 16 29 H 0.08 1.24 7.01 -51.93 -0.36 0.88 16 30 H 0.14 1.35 6.30 -52.49 -0.33 1.02 16 31 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 32 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 33 H 0.14 1.46 7.65 -52.49 -0.40 1.06 16 34 H 0.12 1.61 7.64 -52.48 -0.40 1.21 16 LS Contribution 310.29 15.07 4.68 4.68 Total: -1.00 -31.25 310.29 -5.23 -36.48 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -2.92 Total: 1.59 kcal Atomic # 6 Polarization: 12.26 SS G_CDS: -2.49 Total: 9.77 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 1.01 Total: -39.34 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -0.48 Total: -26.75 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.25 -5.23 -36.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066645069.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.298 kcal (2) G-P(sol) polarization free energy of solvation -31.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds