Wall clock time and date at job start Tue Mar 31 2020 03:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47271 * 67.62102 * 3 2 1 5 5 C 1.37098 * 120.00156 * 263.95242 * 4 3 2 6 6 H 1.07998 * 120.00309 * 200.21975 * 5 4 3 7 7 C 1.38956 * 120.00073 * 20.21303 * 5 4 3 8 8 N 1.31418 * 119.99453 * 21.42962 * 7 5 4 9 9 Si 1.86797 * 120.00210 * 201.42803 * 7 5 4 10 10 H 1.48496 * 109.46952 * 90.00029 * 9 7 5 11 11 H 1.48505 * 109.47013 * 210.00565 * 9 7 5 12 12 H 1.48503 * 109.46776 * 330.00077 * 9 7 5 13 13 C 1.34774 * 120.00073 * 83.95096 * 4 3 2 14 14 O 1.21287 * 120.00215 * 180.02562 * 13 4 3 15 15 C 1.50706 * 119.99652 * 359.97438 * 13 4 3 16 16 O 1.42908 * 109.46686 * 179.97438 * 15 13 4 17 17 C 1.35600 * 116.99478 * 180.02562 * 16 15 13 18 18 C 1.38692 * 120.17148 * 359.95144 * 17 16 15 19 19 C 1.38052 * 120.10985 * 180.02562 * 18 17 16 20 20 C 1.38630 * 120.45360 * 0.02562 * 19 18 17 21 21 C 1.37672 * 120.34160 * 0.02708 * 20 19 18 22 22 C 1.40023 * 119.88177 * 359.96798 * 21 20 19 23 23 C 1.46776 * 120.22532 * 180.02562 * 22 21 20 24 24 O 1.21297 * 120.00165 * 0.02562 * 23 22 21 25 25 H 1.09005 * 109.47114 * 307.62335 * 3 2 1 26 26 H 1.08997 * 109.46957 * 187.62553 * 3 2 1 27 27 H 0.96996 * 119.99758 * 179.97438 * 8 7 5 28 28 H 1.09000 * 109.47002 * 60.00433 * 15 13 4 29 29 H 1.08992 * 109.47190 * 299.99822 * 15 13 4 30 30 H 1.08000 * 119.94581 * 0.05142 * 18 17 16 31 31 H 1.07997 * 119.77604 * 180.28599 * 19 18 17 32 32 H 1.08005 * 119.82915 * 179.97438 * 20 19 18 33 33 H 1.08000 * 120.06454 * 179.97438 * 21 20 19 34 34 H 1.08004 * 120.00066 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0966 -0.5250 -1.2772 5 6 3.4436 -1.8468 -1.3867 6 1 4.0931 -2.1701 -2.1868 7 6 2.9599 -2.7706 -0.4683 8 7 1.8770 -2.5015 0.2260 9 14 3.8487 -4.3948 -0.2207 10 1 4.8707 -4.2421 0.8457 11 1 2.8703 -5.4388 0.1770 12 1 4.5114 -4.7946 -1.4881 13 6 3.2049 0.2908 -2.3445 14 8 3.6090 -0.1445 -3.4020 15 6 2.8228 1.7437 -2.2242 16 8 3.0249 2.3948 -3.4802 17 6 2.7271 3.7162 -3.5433 18 6 2.2487 4.3773 -2.4219 19 6 1.9455 5.7225 -2.4877 20 6 2.1149 6.4238 -3.6715 21 6 2.5876 5.7859 -4.7962 22 6 2.8997 4.4218 -4.7453 23 6 3.4046 3.7343 -5.9398 24 8 3.5532 4.3480 -6.9755 25 1 2.9716 -0.6266 0.8140 26 1 2.9708 1.0194 0.1364 27 1 1.5391 -3.1464 0.8668 28 1 3.4421 2.2205 -1.4644 29 1 1.7737 1.8210 -1.9390 30 1 2.1136 3.8390 -1.4954 31 1 1.5777 6.2330 -1.6100 32 1 1.8741 7.4759 -3.7118 33 1 2.7175 6.3365 -5.7162 34 1 3.6438 2.6820 -5.8965 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066645069.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:46 Heat of formation + Delta-G solvation = -51.985994 kcal Electronic energy + Delta-G solvation = -21810.922645 eV Core-core repulsion = 18288.876354 eV Total energy + Delta-G solvation = -3522.046291 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.61075 -40.57413 -39.62561 -38.19566 -37.52053 -36.17208 -33.86726 -32.48469 -31.31597 -29.76820 -28.97919 -26.38830 -25.85779 -23.31301 -22.13576 -21.06073 -19.82537 -19.42802 -18.30424 -17.90992 -17.76328 -17.12846 -17.04669 -16.58546 -16.13071 -15.69024 -15.46357 -15.29720 -15.08742 -14.93301 -14.76633 -14.60539 -13.91826 -13.69675 -13.48832 -13.33973 -13.11812 -12.89317 -12.77822 -12.36916 -12.29849 -12.17411 -12.11752 -12.00362 -11.14572 -10.81393 -10.49131 -10.07397 -9.96537 -9.30942 -8.44073 -6.01672 -0.36161 0.39996 1.37566 1.44693 1.47158 1.56028 1.67393 1.82774 2.11417 2.23784 2.38093 2.79492 2.96903 3.10666 3.34447 3.53027 3.70612 3.78870 3.97125 4.01518 4.14594 4.29118 4.34044 4.44994 4.56842 4.62547 4.86801 4.89110 5.13141 5.37023 5.47488 5.47622 5.69216 5.95942 6.20657 6.35499 6.41482 6.99935 7.07221 7.26603 7.81612 8.59680 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.024083 B = 0.004136 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.376085 B = 6768.573957 C = 7669.479388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C 0.253 3.747 3 C 0.216 3.784 4 N -0.445 5.445 5 C -0.341 4.341 6 H 0.083 0.917 7 C 0.012 3.988 8 N -0.888 5.888 9 Si 0.986 3.014 10 H -0.256 1.256 11 H -0.288 1.288 12 H -0.279 1.279 13 C 0.447 3.553 14 O -0.602 6.602 15 C 0.054 3.946 16 O -0.307 6.307 17 C 0.169 3.831 18 C -0.230 4.230 19 C -0.033 4.033 20 C -0.171 4.171 21 C -0.031 4.031 22 C -0.249 4.249 23 C 0.395 3.605 24 O -0.504 6.504 25 H 0.127 0.873 26 H 0.149 0.851 27 H 0.276 0.724 28 H 0.133 0.867 29 H 0.095 0.905 30 H 0.157 0.843 31 H 0.167 0.833 32 H 0.160 0.840 33 H 0.140 0.860 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.427 15.782 3.879 16.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.183 5.183 2 C -0.065 4.065 3 C 0.090 3.910 4 N -0.166 5.166 5 C -0.469 4.469 6 H 0.100 0.900 7 C -0.192 4.192 8 N -0.526 5.526 9 Si 0.811 3.189 10 H -0.181 1.181 11 H -0.214 1.214 12 H -0.204 1.204 13 C 0.236 3.764 14 O -0.486 6.486 15 C -0.023 4.023 16 O -0.219 6.219 17 C 0.122 3.878 18 C -0.248 4.248 19 C -0.051 4.051 20 C -0.188 4.188 21 C -0.050 4.050 22 C -0.251 4.251 23 C 0.258 3.742 24 O -0.381 6.381 25 H 0.145 0.855 26 H 0.166 0.834 27 H 0.086 0.914 28 H 0.151 0.849 29 H 0.113 0.887 30 H 0.174 0.826 31 H 0.185 0.815 32 H 0.177 0.823 33 H 0.158 0.842 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.001 15.631 2.817 15.914 hybrid contribution 0.405 -1.542 0.159 1.602 sum 1.406 14.089 2.976 14.468 Atomic orbital electron populations 1.80937 1.14769 1.13301 1.09285 1.29725 0.95786 0.89164 0.91796 1.19207 0.80147 1.02666 0.89011 1.43677 1.56478 1.08712 1.07763 1.19600 1.28790 0.83167 1.15295 0.89953 1.25876 0.94862 1.02046 0.96383 1.69907 1.18273 1.38536 1.25890 0.85024 0.78093 0.77006 0.78794 1.18096 1.21377 1.20411 1.20451 0.83738 0.88467 0.83760 1.90570 1.51017 1.77969 1.29092 1.22669 1.03443 0.90568 0.85657 1.86045 1.80818 1.19989 1.35036 1.19556 0.91745 0.82231 0.94292 1.21645 1.07343 0.97436 0.98410 1.21670 0.91927 0.92512 0.98949 1.21424 1.03058 1.02057 0.92302 1.21456 0.92222 0.91421 0.99867 1.20297 1.14049 0.96280 0.94485 1.23989 0.70821 0.94301 0.85136 1.90454 1.43407 1.70950 1.33295 0.85500 0.83386 0.91399 0.84907 0.88692 0.82581 0.81523 0.82258 0.84210 0.87462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -21.54 18.54 20.01 0.37 -21.17 16 2 C 0.25 9.68 12.82 89.44 1.15 10.83 16 3 C 0.22 7.01 4.91 84.57 0.42 7.43 16 4 N -0.45 -18.83 2.60 -645.41 -1.68 -20.50 16 5 C -0.34 -16.73 9.27 84.04 0.78 -15.95 16 6 H 0.08 4.43 7.43 -2.91 -0.02 4.41 16 7 C 0.01 0.53 4.84 84.93 0.41 0.94 16 8 N -0.89 -41.76 9.58 21.67 0.21 -41.56 16 9 Si 0.99 38.09 29.60 68.60 2.03 40.12 16 10 H -0.26 -9.14 7.11 99.48 0.71 -8.44 16 11 H -0.29 -11.23 7.11 99.48 0.71 -10.52 16 12 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 13 C 0.45 18.85 7.64 87.66 0.67 19.52 16 14 O -0.60 -31.57 16.17 15.99 0.26 -31.31 16 15 C 0.05 1.60 3.83 71.24 0.27 1.87 16 16 O -0.31 -9.94 8.85 -70.06 -0.62 -10.56 16 17 C 0.17 4.45 6.71 22.92 0.15 4.61 16 18 C -0.23 -4.41 9.03 22.33 0.20 -4.21 16 19 C -0.03 -0.47 10.03 22.32 0.22 -0.25 16 20 C -0.17 -2.64 10.02 22.23 0.22 -2.42 16 21 C -0.03 -0.68 9.59 22.57 0.22 -0.46 16 22 C -0.25 -6.70 5.88 -20.07 -0.12 -6.82 16 23 C 0.39 11.98 11.19 70.05 0.78 12.76 16 24 O -0.50 -17.26 17.16 -3.08 -0.05 -17.31 16 25 H 0.13 4.26 6.63 -2.38 -0.02 4.25 16 26 H 0.15 2.86 6.69 -2.39 -0.02 2.85 16 27 H 0.28 12.59 8.31 -92.71 -0.77 11.82 16 28 H 0.13 2.59 6.94 -2.39 -0.02 2.57 16 29 H 0.10 2.57 7.01 -2.39 -0.02 2.55 16 30 H 0.16 2.29 6.30 -2.91 -0.02 2.27 16 31 H 0.17 1.21 8.06 -2.91 -0.02 1.18 16 32 H 0.16 1.46 8.06 -2.91 -0.02 1.43 16 33 H 0.14 2.85 7.65 -2.91 -0.02 2.82 16 34 H 0.11 3.30 7.64 -2.91 -0.02 3.28 16 Total: -1.00 -71.52 310.29 7.05 -64.47 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: 1.15 Total: 9.97 kcal Atomic # 6 Polarization: 22.48 SS G_CDS: 5.38 Total: 27.86 kcal Atomic # 7 Polarization: -82.13 SS G_CDS: -1.10 Total: -83.23 kcal Atomic # 8 Polarization: -58.77 SS G_CDS: -0.41 Total: -59.19 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 2.03 Total: 40.12 kcal Total: -71.52 7.05 -64.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066645069.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.484 kcal (2) G-P(sol) polarization free energy of solvation -71.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds