Wall clock time and date at job start Tue Mar 31 2020 03:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31544 * 119.72190 * 2 1 4 4 C 1.32906 * 121.61751 * 179.97438 * 3 2 1 5 5 C 1.47945 * 119.56694 * 179.97438 * 4 3 2 6 6 C 1.39694 * 122.88204 * 0.02562 * 5 4 3 7 7 C 1.33091 * 113.75020 * 180.02562 * 6 5 4 8 8 S 1.75732 * 109.79983 * 359.97438 * 7 6 5 9 9 C 1.34659 * 122.88248 * 180.02562 * 5 4 3 10 10 C 1.39684 * 120.86868 * 0.25759 * 4 3 2 11 11 C 1.36887 * 119.35126 * 359.46497 * 10 4 3 12 12 C 1.39716 * 119.71785 * 179.97438 * 2 1 3 13 13 C 1.47471 * 120.45699 * 359.97438 * 12 2 1 14 14 O 1.21626 * 119.99493 * 6.27760 * 13 12 2 15 15 N 1.34774 * 119.99952 * 186.28234 * 13 12 2 16 16 C 1.36874 * 119.99417 * 180.02562 * 15 13 12 17 17 H 1.07991 * 120.00469 * 359.97438 * 16 15 13 18 18 C 1.39040 * 119.99524 * 179.97438 * 16 15 13 19 19 N 1.31369 * 120.00371 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99808 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47314 * 89.99983 * 20 18 16 22 22 H 1.48509 * 109.47053 * 209.99957 * 20 18 16 23 23 H 1.48498 * 109.47125 * 329.99505 * 20 18 16 24 24 H 1.09002 * 109.46859 * 96.60219 * 1 2 3 25 25 H 1.08998 * 109.47507 * 216.60591 * 1 2 3 26 26 H 1.09003 * 109.46960 * 336.60683 * 1 2 3 27 27 H 1.08003 * 123.12601 * 0.02562 * 6 5 4 28 28 H 1.08006 * 125.10152 * 180.02562 * 7 6 5 29 29 H 1.08001 * 124.75602 * 359.97438 * 9 5 4 30 30 H 1.07993 * 120.32614 * 179.74013 * 10 4 3 31 31 H 1.07990 * 120.74841 * 180.24764 * 11 10 4 32 32 H 0.96996 * 120.00058 * 359.97438 * 15 13 12 33 33 H 0.97002 * 120.00640 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1592 1.1424 0.0000 4 6 3.4876 1.1863 0.0005 5 6 4.1746 2.4966 -0.0001 6 6 3.4879 3.7131 -0.0007 7 6 4.2852 4.7787 -0.0017 8 16 5.9657 4.2648 -0.0012 9 6 5.5157 2.6189 -0.0001 10 6 4.2435 0.0117 -0.0043 11 6 3.6034 -1.1982 0.0015 12 6 2.1997 -1.2134 0.0005 13 6 1.4662 -2.4928 0.0017 14 8 0.2554 -2.4996 -0.1130 15 7 2.1376 -3.6543 0.1299 16 6 1.4568 -4.8417 0.1304 17 1 0.3817 -4.8479 0.0285 18 6 2.1495 -6.0401 0.2622 19 7 3.4574 -6.0327 0.3857 20 14 1.2204 -7.6606 0.2636 21 1 1.1060 -8.1669 -1.1277 22 1 1.9539 -8.6511 1.0921 23 1 -0.1374 -7.4523 0.8278 24 1 -0.3633 -0.1182 -1.0209 25 1 -0.3634 -0.8249 0.6128 26 1 -0.3633 0.9432 0.4080 27 1 2.4101 3.7824 -0.0003 28 1 3.9497 5.8054 -0.0019 29 1 6.2094 1.7912 0.0006 30 1 5.3225 0.0577 -0.0081 31 1 4.1655 -2.1203 0.0019 32 1 3.1033 -3.6488 0.2211 33 1 3.9406 -6.8687 0.4780 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069484098.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:55 Heat of formation + Delta-G solvation = 10.774053 kcal Electronic energy + Delta-G solvation = -19204.678152 eV Core-core repulsion = 16128.106212 eV Total energy + Delta-G solvation = -3076.571940 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.71296 -39.92122 -38.48779 -36.23716 -34.33589 -33.51811 -32.93453 -30.60742 -28.70943 -27.16592 -26.06063 -24.07882 -22.77439 -21.57791 -20.21446 -20.14225 -18.80583 -18.35587 -17.13410 -16.94480 -16.64420 -16.10505 -15.78075 -15.48080 -15.08535 -14.98473 -14.40578 -14.12861 -13.97869 -13.63894 -13.59358 -13.33678 -13.23243 -13.16225 -12.97651 -12.81185 -12.47498 -12.12267 -11.80892 -11.59663 -10.97292 -10.74789 -10.38748 -10.19278 -10.08125 -9.73963 -8.94352 -8.57187 -6.00376 -0.65252 0.21309 0.27567 0.75597 1.04287 1.37127 1.41640 1.54461 1.62329 2.22171 2.25075 2.87652 2.96787 3.23104 3.25550 3.59325 3.76540 3.93878 4.08858 4.17702 4.36681 4.51524 4.55789 4.66393 4.76114 4.81446 4.96833 5.05550 5.15608 5.26975 5.34409 5.36600 5.52895 5.66154 5.91122 6.47905 6.87362 7.00944 7.40588 7.97163 8.59913 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.033326 B = 0.003379 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.970980 B = 8284.793768 C = 9105.570127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.167 3.833 3 N -0.492 5.492 4 C 0.189 3.811 5 C -0.092 4.092 6 C -0.123 4.123 7 C -0.234 4.234 8 S 0.227 5.773 9 C -0.232 4.232 10 C -0.165 4.165 11 C -0.051 4.051 12 C -0.184 4.184 13 C 0.470 3.530 14 O -0.616 6.616 15 N -0.551 5.551 16 C -0.333 4.333 17 H 0.088 0.912 18 C -0.009 4.009 19 N -0.910 5.910 20 Si 0.998 3.002 21 H -0.269 1.269 22 H -0.269 1.269 23 H -0.270 1.270 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.140 0.860 28 H 0.191 0.809 29 H 0.188 0.812 30 H 0.173 0.827 31 H 0.146 0.854 32 H 0.396 0.604 33 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.052 18.304 -0.239 20.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.027 3.973 3 N -0.202 5.202 4 C 0.050 3.950 5 C -0.107 4.107 6 C -0.152 4.152 7 C -0.369 4.369 8 S 0.493 5.507 9 C -0.370 4.370 10 C -0.185 4.185 11 C -0.077 4.077 12 C -0.190 4.190 13 C 0.260 3.740 14 O -0.505 6.505 15 N -0.185 5.185 16 C -0.462 4.462 17 H 0.106 0.894 18 C -0.211 4.211 19 N -0.549 5.549 20 Si 0.821 3.179 21 H -0.194 1.194 22 H -0.193 1.193 23 H -0.195 1.195 24 H 0.092 0.908 25 H 0.101 0.899 26 H 0.098 0.902 27 H 0.158 0.842 28 H 0.208 0.792 29 H 0.205 0.795 30 H 0.190 0.810 31 H 0.164 0.836 32 H 0.232 0.768 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.320 19.658 -0.283 21.757 hybrid contribution -1.006 -2.751 0.012 2.930 sum 8.313 16.906 -0.271 18.842 Atomic orbital electron populations 1.20826 0.87526 1.03137 1.03476 1.21478 0.97795 0.86465 0.91535 1.67631 1.09413 1.28225 1.14957 1.19963 0.88746 0.93017 0.93286 1.17628 0.92517 0.91629 1.08912 1.20305 1.01821 0.90772 1.02317 1.25963 0.96573 1.03868 1.10470 1.82861 1.05587 0.94346 1.67912 1.25523 0.98523 1.04964 1.07998 1.21916 1.02760 0.90906 1.02926 1.21632 0.92549 0.99970 0.93566 1.20959 0.95250 0.94773 1.08029 1.18019 0.87365 0.83954 0.84708 1.90525 1.14785 1.87200 1.57958 1.41860 1.09968 1.04830 1.61866 1.19818 0.93731 0.83687 1.48983 0.89432 1.26172 0.96588 1.02715 0.95583 1.69635 1.07381 1.30173 1.47757 0.84846 0.78023 0.76264 0.78753 1.19424 1.19326 1.19478 0.90830 0.89868 0.90209 0.84202 0.79211 0.79502 0.80972 0.83587 0.76839 0.90770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.50 8.87 71.24 0.63 -2.87 16 2 C 0.17 6.59 6.82 42.96 0.29 6.88 16 3 N -0.49 -17.56 9.71 -172.00 -1.67 -19.23 16 4 C 0.19 5.86 6.75 41.90 0.28 6.14 16 5 C -0.09 -2.28 5.79 -21.17 -0.12 -2.40 16 6 C -0.12 -2.80 9.80 21.47 0.21 -2.59 16 7 C -0.23 -3.77 11.20 66.67 0.75 -3.02 16 8 S 0.23 3.06 23.09 -56.49 -1.30 1.75 16 9 C -0.23 -4.22 10.22 67.00 0.69 -3.53 16 10 C -0.17 -4.71 9.45 22.30 0.21 -4.50 16 11 C -0.05 -1.76 9.57 22.47 0.22 -1.55 16 12 C -0.18 -7.75 5.89 -19.97 -0.12 -7.86 16 13 C 0.47 23.80 7.64 86.68 0.66 24.47 16 14 O -0.62 -34.17 12.93 -4.11 -0.05 -34.22 16 15 N -0.55 -28.79 5.23 -309.96 -1.62 -30.41 16 16 C -0.33 -18.68 9.68 84.10 0.81 -17.86 16 17 H 0.09 5.18 7.15 -2.92 -0.02 5.16 16 18 C -0.01 -0.48 5.50 84.95 0.47 -0.01 16 19 N -0.91 -47.67 13.05 21.68 0.28 -47.39 16 20 Si 1.00 41.66 29.55 68.60 2.03 43.69 16 21 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 22 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 23 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 24 H 0.07 2.76 8.14 -2.39 -0.02 2.75 16 25 H 0.08 3.57 5.85 -2.39 -0.01 3.56 16 26 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 27 H 0.14 3.41 7.92 -2.91 -0.02 3.39 16 28 H 0.19 1.97 8.06 -2.91 -0.02 1.95 16 29 H 0.19 2.54 6.74 -2.91 -0.02 2.52 16 30 H 0.17 3.41 6.56 -2.91 -0.02 3.39 16 31 H 0.15 4.78 6.55 -2.92 -0.02 4.76 16 32 H 0.40 19.51 6.02 -92.71 -0.56 18.95 16 33 H 0.28 13.74 8.31 -92.71 -0.77 12.96 16 Total: -1.00 -66.52 301.48 3.25 -63.26 By element: Atomic # 1 Polarization: 30.65 SS G_CDS: 0.61 Total: 31.27 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: 4.98 Total: -8.71 kcal Atomic # 7 Polarization: -94.02 SS G_CDS: -3.01 Total: -97.03 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -0.05 Total: -34.22 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Atomic # 16 Polarization: 3.06 SS G_CDS: -1.30 Total: 1.75 kcal Total: -66.52 3.25 -63.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069484098.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.035 kcal (2) G-P(sol) polarization free energy of solvation -66.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds