Wall clock time and date at job start Tue Mar 31 2020 03:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47106 * 293.39110 * 3 2 1 5 5 C 1.37097 * 120.00057 * 267.51653 * 4 3 2 6 6 H 1.07997 * 119.99675 * 194.94684 * 5 4 3 7 7 C 1.38948 * 120.00415 * 14.94453 * 5 4 3 8 8 N 1.31417 * 119.99738 * 22.25833 * 7 5 4 9 9 Si 1.86791 * 120.00503 * 202.25794 * 7 5 4 10 10 H 1.48504 * 109.46835 * 60.00038 * 9 7 5 11 11 H 1.48500 * 109.47627 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47297 * 300.00468 * 9 7 5 13 13 C 1.34779 * 119.99516 * 87.51638 * 4 3 2 14 14 O 1.21293 * 119.99569 * 184.66336 * 13 4 3 15 15 C 1.50696 * 120.00288 * 4.66285 * 13 4 3 16 16 H 1.09003 * 109.70527 * 40.34078 * 15 13 4 17 17 C 1.53468 * 109.71091 * 279.71122 * 15 13 4 18 18 O 1.43166 * 108.26361 * 180.61281 * 17 15 13 19 19 C 1.36107 * 116.71597 * 46.18193 * 18 17 15 20 20 C 1.38706 * 119.40405 * 162.89183 * 19 18 17 21 21 C 1.38193 * 120.06629 * 179.63169 * 20 19 18 22 22 C 1.38248 * 120.11584 * 0.27281 * 21 20 19 23 23 C 1.38194 * 120.11323 * 359.54880 * 22 21 20 24 24 C 1.38704 * 120.06516 * 0.50029 * 23 22 21 25 25 O 1.36108 * 119.40001 * 179.46275 * 24 23 22 26 26 H 1.09004 * 109.46614 * 173.39681 * 3 2 1 27 27 H 1.08999 * 109.47286 * 53.39290 * 3 2 1 28 28 H 0.96995 * 120.00347 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.70759 * 300.30646 * 17 15 13 30 30 H 1.09004 * 109.70822 * 60.87524 * 17 15 13 31 31 H 1.08003 * 119.96794 * 359.60664 * 20 19 18 32 32 H 1.08004 * 119.94381 * 179.97438 * 21 20 19 33 33 H 1.08007 * 119.94640 * 179.80608 * 22 21 20 34 34 H 1.08003 * 119.97335 * 180.22469 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0966 -0.5475 1.2677 5 6 3.3733 0.2915 2.3161 6 1 3.9522 -0.0653 3.1551 7 6 2.9089 1.6010 2.2992 8 7 1.8782 1.9231 1.5503 9 14 3.7496 2.9037 3.3411 10 1 5.1723 3.0223 2.9322 11 1 3.0679 4.2087 3.1472 12 1 3.6768 2.5157 4.7726 13 6 3.2741 -1.8766 1.4033 14 8 3.5971 -2.3389 2.4772 15 6 3.0713 -2.7884 0.2207 16 1 3.4824 -2.3245 -0.6759 17 6 1.5730 -3.0569 0.0251 18 8 1.4171 -3.9355 -1.0944 19 6 2.2397 -5.0189 -1.1413 20 6 1.9198 -6.0813 -1.9737 21 6 2.7493 -7.1848 -2.0377 22 6 3.8968 -7.2355 -1.2684 23 6 4.2233 -6.1788 -0.4398 24 6 3.3947 -5.0687 -0.3700 25 8 3.7236 -4.0405 0.4589 26 1 2.9709 1.0217 -0.1182 27 1 2.9717 -0.6120 -0.8249 28 1 1.5538 2.8371 1.5387 29 1 1.1637 -3.5257 0.9200 30 1 1.0536 -2.1183 -0.1683 31 1 1.0214 -6.0463 -2.5721 32 1 2.4981 -8.0111 -2.6862 33 1 4.5415 -8.1006 -1.3182 34 1 5.1223 -6.2193 0.1575 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072679855.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:27 Heat of formation + Delta-G solvation = -24.447333 kcal Electronic energy + Delta-G solvation = -22730.589652 eV Core-core repulsion = 19209.737527 eV Total energy + Delta-G solvation = -3520.852125 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.24103 -39.06388 -37.41878 -37.07543 -35.93724 -34.53693 -32.30334 -30.97503 -30.58730 -28.51056 -27.62967 -25.63425 -24.38250 -22.74848 -21.30585 -19.69606 -18.54417 -18.15628 -17.64943 -16.83270 -16.56306 -16.09253 -15.21969 -15.10717 -14.82223 -14.45091 -14.26711 -14.13222 -13.80455 -13.73126 -13.37442 -13.15104 -12.75936 -12.15676 -12.03872 -11.85951 -11.76816 -11.49432 -11.28608 -11.19790 -11.03374 -10.65112 -10.53869 -10.48520 -10.33541 -9.45556 -8.80136 -8.60245 -8.29398 -7.96802 -6.69451 -4.17867 1.32666 1.36174 2.86313 2.99434 3.13828 3.16070 3.23500 3.31772 3.62597 3.77021 3.77835 4.00126 4.35988 4.54032 4.68341 4.73521 4.92312 4.98360 4.99829 5.23815 5.24738 5.29823 5.43467 5.47769 5.67668 5.86379 5.88919 6.15345 6.25944 6.29822 6.46494 6.66379 7.00956 7.30177 7.50604 7.65452 8.06811 8.51921 8.76843 8.95497 9.45366 10.36011 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.030495 B = 0.004731 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.963379 B = 5917.281522 C = 6644.930498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.241 3.759 3 C 0.212 3.788 4 N -0.430 5.430 5 C -0.315 4.315 6 H 0.113 0.887 7 C 0.035 3.965 8 N -0.873 5.873 9 Si 0.934 3.066 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.271 1.271 13 C 0.457 3.543 14 O -0.545 6.545 15 C 0.041 3.959 16 H 0.099 0.901 17 C 0.030 3.970 18 O -0.303 6.303 19 C 0.046 3.954 20 C -0.115 4.115 21 C -0.124 4.124 22 C -0.119 4.119 23 C -0.116 4.116 24 C 0.058 3.942 25 O -0.277 6.277 26 H 0.134 0.866 27 H 0.085 0.915 28 H 0.278 0.722 29 H 0.083 0.917 30 H 0.126 0.874 31 H 0.132 0.868 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.704 -9.679 -9.045 13.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.139 5.139 2 C -0.076 4.076 3 C 0.084 3.916 4 N -0.152 5.152 5 C -0.442 4.442 6 H 0.131 0.869 7 C -0.169 4.169 8 N -0.511 5.511 9 Si 0.760 3.240 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.196 1.196 13 C 0.243 3.757 14 O -0.425 6.425 15 C -0.020 4.020 16 H 0.117 0.883 17 C -0.046 4.046 18 O -0.217 6.217 19 C 0.001 3.999 20 C -0.134 4.134 21 C -0.142 4.142 22 C -0.137 4.137 23 C -0.134 4.134 24 C 0.013 3.987 25 O -0.190 6.190 26 H 0.152 0.848 27 H 0.103 0.897 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.144 0.856 31 H 0.150 0.850 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.076 -9.651 -8.482 13.015 hybrid contribution 0.525 1.069 0.545 1.310 sum 2.600 -8.582 -7.936 11.975 Atomic orbital electron populations 1.80966 1.13223 1.10653 1.09097 1.29115 0.95292 0.91099 0.92131 1.18905 0.81981 1.03729 0.86946 1.43602 1.56445 1.03627 1.11493 1.19765 1.32363 0.90744 1.01284 0.86896 1.25332 0.94668 0.98869 0.98068 1.69797 1.19927 1.20887 1.40508 0.85854 0.79388 0.78740 0.80036 1.19448 1.20829 1.19608 1.19127 0.86240 0.82154 0.88145 1.90604 1.50640 1.73970 1.27303 1.23046 0.93637 0.84769 1.00516 0.88325 1.23761 0.95731 0.95604 0.89547 1.86328 1.56440 1.33892 1.45060 1.19045 0.90408 0.89962 1.00505 1.20422 1.01173 0.91337 1.00440 1.20849 0.95117 0.97699 1.00554 1.20869 0.97718 0.98167 0.96924 1.20463 0.99604 0.92310 1.01042 1.19129 0.93730 0.90939 0.94949 1.86428 1.63168 1.17339 1.52060 0.84826 0.89704 0.91127 0.89861 0.85622 0.84986 0.85355 0.85284 0.84733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.31 18.21 42.15 0.77 -9.54 16 2 C 0.24 5.03 10.65 -20.76 -0.22 4.81 16 3 C 0.21 3.98 4.88 -6.82 -0.03 3.95 16 4 N -0.43 -9.66 2.59 -117.93 -0.31 -9.96 16 5 C -0.32 -7.77 9.34 -14.93 -0.14 -7.90 16 6 H 0.11 2.94 7.39 -52.49 -0.39 2.56 16 7 C 0.04 0.83 4.88 -17.47 -0.09 0.74 16 8 N -0.87 -20.79 9.27 55.50 0.51 -20.27 16 9 Si 0.93 18.73 29.61 -169.99 -5.03 13.70 16 10 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 11 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 12 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 13 C 0.46 10.37 6.89 -10.99 -0.08 10.30 16 14 O -0.54 -14.52 16.27 -13.42 -0.22 -14.74 16 15 C 0.04 0.77 2.64 -27.64 -0.07 0.70 16 16 H 0.10 1.58 6.49 -51.93 -0.34 1.24 16 17 C 0.03 0.54 6.44 37.40 0.24 0.78 16 18 O -0.30 -5.21 10.42 -32.87 -0.34 -5.55 16 19 C 0.05 0.74 6.49 -39.13 -0.25 0.48 16 20 C -0.12 -1.49 9.96 -39.43 -0.39 -1.88 16 21 C -0.12 -1.33 10.04 -39.59 -0.40 -1.73 16 22 C -0.12 -1.30 10.04 -39.59 -0.40 -1.70 16 23 C -0.12 -1.58 9.96 -39.43 -0.39 -1.98 16 24 C 0.06 0.98 6.49 -39.14 -0.25 0.72 16 25 O -0.28 -5.39 9.69 -46.68 -0.45 -5.85 16 26 H 0.13 2.51 6.51 -51.93 -0.34 2.18 16 27 H 0.09 1.23 6.03 -51.93 -0.31 0.92 16 28 H 0.28 6.43 8.31 -40.82 -0.34 6.09 16 29 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 30 H 0.13 2.32 4.34 -51.93 -0.23 2.10 16 31 H 0.13 1.47 8.06 -52.48 -0.42 1.04 16 32 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 33 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 34 H 0.13 1.68 8.06 -52.48 -0.42 1.25 16 LS Contribution 295.54 15.07 4.45 4.45 Total: -1.00 -30.15 295.54 -5.94 -36.09 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -2.85 Total: 4.39 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: -2.48 Total: 7.29 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.98 Total: -39.78 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -1.01 Total: -26.13 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.15 -5.94 -36.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072679855.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.641 kcal (2) G-P(sol) polarization free energy of solvation -30.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds