Wall clock time and date at job start Tue Mar 31 2020 03:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00302 * 2 1 4 4 H 1.48500 * 109.47157 * 240.00222 * 3 2 1 5 5 H 1.48495 * 109.47225 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47055 * 120.00323 * 3 2 1 7 7 C 1.37885 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99842 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99969 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47122 * 180.02562 * 9 7 2 11 11 O 1.42902 * 109.47271 * 179.97438 * 10 9 7 12 12 C 1.35913 * 116.99982 * 179.97438 * 11 10 9 13 13 C 1.38750 * 120.03516 * 0.02562 * 12 11 10 14 14 C 1.38139 * 120.00515 * 179.97438 * 13 12 11 15 15 C 1.38318 * 120.06808 * 359.97438 * 14 13 12 16 16 Br 1.89101 * 119.96938 * 180.27659 * 15 14 13 17 17 C 1.38555 * 120.06612 * 0.02562 * 15 14 13 18 18 F 1.35099 * 119.99727 * 180.02562 * 17 15 14 19 19 C 1.38373 * 119.99685 * 359.97438 * 17 15 14 20 20 H 0.97005 * 119.99308 * 359.97438 * 1 2 3 21 21 H 1.08993 * 109.47144 * 59.99551 * 9 7 2 22 22 H 1.09000 * 109.46456 * 299.99906 * 9 7 2 23 23 H 1.09002 * 109.46994 * 59.99668 * 10 9 7 24 24 H 1.08998 * 109.47176 * 300.00220 * 10 9 7 25 25 H 1.08003 * 120.00281 * 0.02562 * 13 12 11 26 26 H 1.07994 * 119.96912 * 179.97438 * 14 13 12 27 27 H 1.08002 * 120.03094 * 179.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2844 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 8 1.5306 -4.8997 0.0001 12 6 2.2708 -6.0396 -0.0004 13 6 3.6565 -5.9678 -0.0009 14 6 4.4082 -7.1268 -0.0008 15 6 3.7810 -8.3596 0.0003 16 35 4.8128 -9.9443 0.0083 17 6 2.3975 -8.4346 0.0007 18 9 1.7864 -9.6395 0.0023 19 6 1.6419 -7.2754 0.0007 20 1 -0.4849 0.8401 0.0004 21 1 0.6239 -2.5567 -0.8902 22 1 0.6247 -2.5570 0.8897 23 1 2.8718 -3.6044 0.8894 24 1 2.8718 -3.6044 -0.8905 25 1 4.1474 -5.0058 -0.0005 26 1 5.4867 -7.0702 -0.0016 27 1 0.5634 -7.3332 0.0006 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083576627.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:58 Heat of formation + Delta-G solvation = -82.894612 kcal Electronic energy + Delta-G solvation = -14388.028701 eV Core-core repulsion = 11492.028520 eV Total energy + Delta-G solvation = -2896.000181 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 287.990 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.15300 -41.20061 -38.53051 -35.47700 -33.24570 -32.21465 -31.74617 -29.54908 -27.02169 -24.46337 -23.63694 -22.34688 -19.79663 -18.39512 -17.91819 -17.20962 -17.16674 -16.90028 -16.68846 -16.50107 -15.41878 -14.90879 -14.33060 -14.32864 -14.06027 -13.48284 -13.38081 -12.91502 -12.73734 -12.61458 -12.26892 -12.00696 -11.61317 -11.42482 -11.33589 -11.28278 -10.59394 -10.10360 -9.31837 -8.24945 -6.38178 -0.14924 -0.01957 0.46655 1.43594 1.46686 1.54549 2.03148 2.30851 2.43503 3.07042 3.10220 3.56357 3.79717 4.04037 4.11467 4.29046 4.32196 4.52340 4.71684 4.79432 4.91015 5.11958 5.30343 5.44236 5.48863 5.71851 6.06912 6.32731 6.77086 7.32119 8.87610 Molecular weight = 287.99amu Principal moments of inertia in cm(-1) A = 0.049952 B = 0.003163 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.403748 B = 8849.762472 C = 9389.716199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.974 3.026 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.075 0.925 9 C 0.025 3.975 10 C 0.078 3.922 11 O -0.328 6.328 12 C 0.167 3.833 13 C -0.213 4.213 14 C -0.011 4.011 15 C -0.183 4.183 16 Br -0.026 7.026 17 C 0.159 3.841 18 F -0.125 7.125 19 C -0.199 4.199 20 H 0.266 0.734 21 H -0.001 1.001 22 H -0.001 1.001 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.159 0.841 26 H 0.174 0.826 27 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.799 -19.027 0.006 22.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.198 4.198 3 Si 0.797 3.203 4 H -0.188 1.188 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.093 0.907 9 C -0.012 4.012 10 C 0.004 3.996 11 O -0.241 6.241 12 C 0.119 3.881 13 C -0.233 4.233 14 C -0.031 4.031 15 C -0.263 4.263 16 Br 0.058 6.942 17 C 0.137 3.863 18 F -0.103 7.103 19 C -0.219 4.219 20 H 0.074 0.926 21 H 0.018 0.982 22 H 0.018 0.982 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.176 0.824 26 H 0.191 0.809 27 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 11.793 -19.520 0.010 22.806 hybrid contribution -0.463 1.081 -0.002 1.176 sum 11.330 -18.440 0.008 21.642 Atomic orbital electron populations 1.70114 1.08040 1.28203 1.50656 1.26025 0.95777 1.03662 0.94311 0.85369 0.78103 0.77373 0.79426 1.18824 1.21166 1.18835 1.21380 0.93980 0.90857 1.51990 0.90704 1.18986 0.94672 0.91340 0.96201 1.23085 0.95570 0.79240 1.01672 1.86147 1.37431 1.13695 1.86844 1.19090 0.90853 0.86472 0.91649 1.21637 0.92016 1.01191 1.08419 1.21065 1.01771 0.88188 0.92033 1.21858 0.92163 0.94939 1.17332 1.96701 1.69098 1.30386 1.97974 1.16936 0.89175 0.80400 0.99751 1.91541 1.83277 1.42083 1.93398 1.20321 1.01938 0.88555 1.11065 0.92554 0.98216 0.98227 0.90947 0.90935 0.82364 0.80905 0.82899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.05 13.29 21.45 0.28 -54.77 15 2 C 0.00 0.05 5.46 84.66 0.46 0.51 15 3 Si 0.97 41.88 29.54 68.60 2.03 43.90 15 4 H -0.26 -10.77 7.11 99.48 0.71 -10.07 15 5 H -0.29 -12.23 7.11 99.48 0.71 -11.52 15 6 H -0.26 -10.78 7.11 99.48 0.71 -10.07 15 7 C -0.54 -28.98 9.11 25.60 0.23 -28.75 15 8 H 0.07 3.65 7.74 -2.91 -0.02 3.63 15 9 C 0.03 1.29 5.34 29.85 0.16 1.45 15 10 C 0.08 3.00 4.68 71.98 0.34 3.33 15 11 O -0.33 -12.22 10.14 -92.57 -0.94 -13.15 15 12 C 0.17 5.03 6.68 22.50 0.15 5.18 15 13 C -0.21 -5.22 9.04 22.37 0.20 -5.02 15 14 C -0.01 -0.23 9.78 22.27 0.22 -0.01 15 15 C -0.18 -4.20 6.23 22.36 0.14 -4.06 15 16 Br -0.03 -0.53 33.28 -20.37 -0.68 -1.21 15 17 C 0.16 4.09 7.27 22.38 0.16 4.25 15 18 F -0.12 -3.22 16.72 44.97 0.75 -2.46 15 19 C -0.20 -5.52 9.97 22.40 0.22 -5.30 15 20 H 0.27 14.79 8.31 -92.70 -0.77 14.02 15 21 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 15 22 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 15 23 H 0.07 2.52 7.66 -2.39 -0.02 2.50 15 24 H 0.07 2.53 7.66 -2.39 -0.02 2.51 15 25 H 0.16 3.49 6.30 -2.91 -0.02 3.47 15 26 H 0.17 2.48 8.06 -2.91 -0.02 2.45 15 27 H 0.15 4.04 8.06 -2.91 -0.02 4.01 15 Total: -1.00 -60.21 267.90 4.92 -55.29 By element: Atomic # 1 Polarization: -0.37 SS G_CDS: 1.19 Total: 0.82 kcal Atomic # 6 Polarization: -30.70 SS G_CDS: 2.29 Total: -28.42 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: 0.28 Total: -54.77 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -0.94 Total: -13.15 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.75 Total: -2.46 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.90 kcal Atomic # 35 Polarization: -0.53 SS G_CDS: -0.68 Total: -1.21 kcal Total: -60.21 4.92 -55.29 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083576627.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.607 kcal (2) G-P(sol) polarization free energy of solvation -60.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds