Wall clock time and date at job start Tue Mar 31 2020 03:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00280 * 2 1 4 4 H 1.48492 * 109.47229 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46905 * 299.99932 * 3 2 1 6 6 H 1.48501 * 109.46969 * 59.99743 * 3 2 1 7 7 C 1.37879 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00118 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99978 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47145 * 180.02562 * 9 7 2 11 11 O 1.42899 * 109.47206 * 179.97438 * 10 9 7 12 12 C 1.35897 * 117.00024 * 179.97438 * 11 10 9 13 13 C 1.38717 * 120.03674 * 179.97438 * 12 11 10 14 14 C 1.38347 * 119.94332 * 180.02562 * 13 12 11 15 15 F 1.35102 * 119.99653 * 180.02562 * 14 13 12 16 16 C 1.38505 * 120.01245 * 359.97438 * 14 13 12 17 17 C 1.38297 * 120.07577 * 0.02562 * 16 14 13 18 18 Br 1.89095 * 119.97173 * 179.97438 * 17 16 14 19 19 C 1.38273 * 120.06060 * 359.97438 * 17 16 14 20 20 H 0.97005 * 119.99758 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46837 * 60.00098 * 9 7 2 22 22 H 1.08993 * 109.47134 * 300.00312 * 9 7 2 23 23 H 1.09001 * 109.47354 * 60.00193 * 10 9 7 24 24 H 1.09007 * 109.47259 * 300.00172 * 10 9 7 25 25 H 1.08001 * 120.03183 * 0.04881 * 13 12 11 26 26 H 1.08001 * 119.96185 * 179.74431 * 16 14 13 27 27 H 1.07996 * 120.01045 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 8 1.5307 -4.8996 0.0001 12 6 2.2708 -6.0394 -0.0004 13 6 1.6419 -7.2757 0.0007 14 6 2.3972 -8.4348 0.0007 15 9 1.7858 -9.6395 0.0013 16 6 3.7803 -8.3603 -0.0008 17 6 4.4080 -7.1280 -0.0019 18 35 6.2964 -7.0298 -0.0033 19 6 3.6561 -5.9677 -0.0019 20 1 -0.4850 0.8401 -0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8896 23 1 2.8718 -3.6044 0.8895 24 1 2.8719 -3.6043 -0.8905 25 1 0.5634 -7.3336 0.0011 26 1 4.3692 -9.2657 0.0034 27 1 4.1471 -5.0058 -0.0032 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084192574.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:52 Heat of formation + Delta-G solvation = -84.307981 kcal Electronic energy + Delta-G solvation = -14409.417472 eV Core-core repulsion = 11513.356003 eV Total energy + Delta-G solvation = -2896.061469 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 287.990 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.08248 -41.22543 -38.55526 -35.49200 -33.49250 -32.29010 -30.92842 -30.33102 -27.07317 -24.22331 -23.68674 -22.44492 -19.67884 -18.39951 -17.90761 -17.33860 -17.19651 -17.00775 -16.61283 -16.50411 -15.37856 -14.90437 -14.41708 -14.35801 -14.14167 -13.50709 -13.47215 -12.91060 -12.80424 -12.57445 -12.27728 -12.01569 -11.61856 -11.43365 -11.38256 -11.35604 -10.62016 -9.91711 -9.46988 -8.26366 -6.39378 -0.25186 0.01386 0.35518 1.42638 1.42698 1.56110 2.03274 2.26007 2.42721 3.08992 3.16827 3.74220 3.76504 3.88879 4.07981 4.17911 4.25174 4.37140 4.69010 4.81061 4.88646 5.01198 5.30867 5.46651 5.47447 5.71001 6.06079 6.30087 6.75929 7.31007 8.86746 Molecular weight = 287.99amu Principal moments of inertia in cm(-1) A = 0.020103 B = 0.004278 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.498706 B = 6544.264744 C = 7916.317009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.972 3.028 4 H -0.257 1.257 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.544 4.544 8 H 0.072 0.928 9 C 0.027 3.973 10 C 0.078 3.922 11 O -0.325 6.325 12 C 0.157 3.843 13 C -0.185 4.185 14 C 0.146 3.854 15 F -0.127 7.127 16 C -0.163 4.163 17 C -0.028 4.028 18 Br -0.020 7.020 19 C -0.197 4.197 20 H 0.266 0.734 21 H 0.001 0.999 22 H 0.001 0.999 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.155 0.845 26 H 0.169 0.831 27 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.513 -17.472 -0.001 21.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.796 3.204 4 H -0.181 1.181 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.582 4.582 8 H 0.091 0.909 9 C -0.010 4.010 10 C 0.004 3.996 11 O -0.239 6.239 12 C 0.110 3.890 13 C -0.205 4.205 14 C 0.126 3.874 15 F -0.105 7.105 16 C -0.183 4.183 17 C -0.108 4.108 18 Br 0.066 6.934 19 C -0.218 4.218 20 H 0.075 0.925 21 H 0.020 0.980 22 H 0.020 0.980 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.172 0.828 26 H 0.186 0.814 27 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 12.851 -17.335 -0.001 21.579 hybrid contribution -0.520 0.836 0.000 0.984 sum 12.332 -16.499 -0.001 20.598 Atomic orbital electron populations 1.70116 1.07993 1.28122 1.50740 1.25992 0.95767 1.03564 0.94255 0.85284 0.79174 0.78140 0.77771 1.18052 1.20408 1.20398 1.21432 0.93919 0.90941 1.51900 0.90945 1.18976 0.94567 0.91147 0.96325 1.23055 0.95632 0.79566 1.01307 1.86147 1.36914 1.13505 1.87303 1.18808 0.89775 0.86918 0.93547 1.20544 1.02349 0.88842 1.08741 1.17001 0.90155 0.79848 1.00412 1.91538 1.83334 1.42037 1.93641 1.21086 0.92638 0.98428 1.06164 1.21302 0.91753 0.94462 1.03241 1.96763 1.00172 1.99046 1.97419 1.21422 0.92599 0.99791 1.07951 0.92486 0.98039 0.98047 0.91388 0.91376 0.82765 0.81394 0.83421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.33 13.29 21.45 0.28 -55.04 15 2 C 0.00 0.16 5.46 84.66 0.46 0.62 15 3 Si 0.97 42.48 29.54 68.60 2.03 44.51 15 4 H -0.26 -10.53 7.11 99.48 0.71 -9.82 15 5 H -0.28 -11.92 7.11 99.48 0.71 -11.21 15 6 H -0.28 -11.91 7.11 99.48 0.71 -11.21 15 7 C -0.54 -29.54 9.11 25.60 0.23 -29.30 15 8 H 0.07 3.66 7.74 -2.91 -0.02 3.64 15 9 C 0.03 1.40 5.34 29.85 0.16 1.56 15 10 C 0.08 3.14 4.68 71.98 0.34 3.48 15 11 O -0.33 -12.42 10.14 -92.39 -0.94 -13.35 15 12 C 0.16 4.88 6.68 22.50 0.15 5.03 15 13 C -0.18 -4.98 9.97 22.41 0.22 -4.76 15 14 C 0.15 3.43 7.30 22.36 0.16 3.59 15 15 F -0.13 -2.87 17.27 44.97 0.78 -2.10 15 16 C -0.16 -3.44 9.76 22.35 0.22 -3.22 15 17 C -0.03 -0.64 6.22 22.29 0.14 -0.51 15 18 Br -0.02 -0.40 33.70 -20.37 -0.69 -1.08 15 19 C -0.20 -5.42 8.78 22.39 0.20 -5.22 15 20 H 0.27 14.79 8.31 -92.70 -0.77 14.02 15 21 H 0.00 0.07 8.14 -2.39 -0.02 0.05 15 22 H 0.00 0.06 8.14 -2.39 -0.02 0.04 15 23 H 0.07 2.53 7.66 -2.39 -0.02 2.51 15 24 H 0.07 2.53 7.66 -2.38 -0.02 2.52 15 25 H 0.15 3.88 8.06 -2.91 -0.02 3.86 15 26 H 0.17 2.68 8.06 -2.91 -0.02 2.66 15 27 H 0.15 4.02 6.30 -2.91 -0.02 4.00 15 Total: -1.00 -59.68 268.61 4.93 -54.75 By element: Atomic # 1 Polarization: -0.14 SS G_CDS: 1.19 Total: 1.05 kcal Atomic # 6 Polarization: -31.01 SS G_CDS: 2.28 Total: -28.73 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: 0.28 Total: -55.04 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -0.94 Total: -13.35 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.78 Total: -2.10 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Atomic # 35 Polarization: -0.40 SS G_CDS: -0.69 Total: -1.08 kcal Total: -59.68 4.93 -54.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084192574.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.560 kcal (2) G-P(sol) polarization free energy of solvation -59.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds