Wall clock time and date at job start Tue Mar 31 2020 03:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 110.36140 * 2 1 4 4 C 1.54581 * 110.40021 * 122.32665 * 2 1 3 5 5 H 1.09001 * 110.40200 * 237.58364 * 4 2 1 6 6 O 1.42901 * 110.40187 * 359.97438 * 4 2 1 7 7 C 1.55921 * 104.64515 * 118.78877 * 4 2 1 8 8 Br 1.96602 * 115.92150 * 160.03022 * 7 4 2 9 9 C 1.55920 * 104.49965 * 288.91543 * 7 4 2 10 10 C 1.57031 * 103.68837 * 70.87052 * 9 7 4 11 11 C 1.55925 * 110.40199 * 237.67215 * 2 1 3 12 12 C 1.50697 * 115.92387 * 81.17885 * 11 2 1 13 13 H 1.08008 * 119.99743 * 0.02562 * 12 11 2 14 14 C 1.37870 * 120.00424 * 179.97438 * 12 11 2 15 15 N 1.31524 * 119.99863 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00464 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46967 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47395 * 119.99870 * 16 14 12 19 19 H 1.48501 * 109.47417 * 240.00378 * 16 14 12 20 20 C 1.56954 * 100.65117 * 33.77997 * 7 4 2 21 21 H 1.09004 * 109.46591 * 68.24531 * 1 2 3 22 22 H 1.08998 * 109.47323 * 188.24514 * 1 2 3 23 23 H 1.08999 * 109.46950 * 308.24642 * 1 2 3 24 24 H 1.09011 * 109.47113 * 59.29563 * 3 2 1 25 25 H 1.08998 * 109.47335 * 179.29482 * 3 2 1 26 26 H 1.09000 * 109.46968 * 299.30370 * 3 2 1 27 27 H 0.96706 * 114.00072 * 180.02562 * 6 4 2 28 28 H 1.09001 * 110.40734 * 189.06954 * 9 7 4 29 29 H 1.09008 * 110.40167 * 311.48524 * 9 7 4 30 30 H 1.09002 * 109.99109 * 240.84810 * 10 9 7 31 31 H 1.08999 * 110.77916 * 118.56485 * 10 9 7 32 32 H 0.96997 * 119.99894 * 179.97438 * 15 14 12 33 33 H 1.08996 * 112.02450 * 63.17120 * 20 7 4 34 34 H 1.08995 * 112.02777 * 189.61921 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0624 1.4344 0.0000 4 6 2.0689 -0.7748 1.2243 5 1 2.7147 -0.1344 1.8251 6 8 0.9872 -1.2736 2.0137 7 6 2.8872 -1.9541 0.6156 8 35 4.2052 -2.7922 1.8097 9 6 1.8099 -2.9070 0.0135 10 6 1.2724 -2.1192 -1.2340 11 6 2.0736 -0.7815 -1.2349 12 6 2.1085 -0.0188 -2.5341 13 1 1.7693 1.0061 -2.5679 14 6 2.5743 -0.6288 -3.6794 15 7 2.9878 -1.8766 -3.6383 16 14 2.6168 0.3165 -5.2900 17 1 2.1009 1.6916 -5.0707 18 1 4.0147 0.3862 -5.7864 19 1 1.7692 -0.3765 -6.2933 20 6 3.4579 -1.2737 -0.6786 21 1 -0.3633 0.3809 -0.9545 22 1 -0.3634 -1.0170 0.1474 23 1 -0.3633 0.6362 0.8071 24 1 1.6968 1.9576 0.8837 25 1 3.1522 1.4175 0.0126 26 1 1.7173 1.9500 -0.8962 27 1 1.2667 -1.7683 2.7962 28 1 2.2656 -3.8466 -0.2990 29 1 1.0173 -3.0909 0.7389 30 1 0.2062 -1.9234 -1.1199 31 1 1.4598 -2.6751 -2.1526 32 1 3.3151 -2.3059 -4.4441 33 1 4.1216 -0.4415 -0.4441 34 1 3.9342 -1.9943 -1.3433 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085398890.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:27 Heat of formation + Delta-G solvation = -47.389693 kcal Electronic energy + Delta-G solvation = -17218.954900 eV Core-core repulsion = 14583.787728 eV Total energy + Delta-G solvation = -2635.167172 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 288.047 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.09155 -35.30242 -32.67504 -32.50457 -29.81516 -28.18344 -27.39278 -25.89136 -24.31725 -23.56628 -20.21059 -18.96376 -17.65701 -16.59339 -15.63245 -15.23531 -14.41598 -14.22489 -13.58076 -13.02997 -12.70845 -12.01303 -11.88177 -11.69491 -11.37944 -11.17852 -11.06160 -10.84538 -10.69724 -10.60061 -10.43597 -10.29718 -9.92761 -9.78321 -9.65276 -9.40416 -9.33599 -9.02530 -8.86325 -8.54176 -8.31715 -6.08668 -4.14525 2.24019 3.24787 3.34182 3.36767 4.34686 4.69389 5.01681 5.13933 5.33309 5.45507 5.78954 5.84371 6.01216 6.13332 6.23154 6.33466 6.43496 6.54773 6.58411 6.61561 6.66753 6.83490 6.90992 7.02603 7.03854 7.14851 7.25031 7.41256 7.56690 7.73107 7.96617 8.03639 8.38848 8.86928 9.50092 10.96396 Molecular weight = 288.05amu Principal moments of inertia in cm(-1) A = 0.023257 B = 0.008006 C = 0.006833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.675510 B = 3496.728015 C = 4096.544609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.058 4.058 3 C -0.126 4.126 4 C 0.125 3.875 5 H 0.053 0.947 6 O -0.551 6.551 7 C -0.072 4.072 8 Br -0.177 7.177 9 C -0.099 4.099 10 C -0.121 4.121 11 C 0.107 3.893 12 C -0.490 4.490 13 H 0.065 0.935 14 C 0.069 3.931 15 N -0.878 5.878 16 Si 0.891 3.109 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.284 1.284 20 C -0.098 4.098 21 H 0.052 0.948 22 H 0.062 0.938 23 H 0.034 0.966 24 H 0.033 0.967 25 H 0.050 0.950 26 H 0.067 0.933 27 H 0.364 0.636 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.089 0.911 32 H 0.261 0.739 33 H 0.050 0.950 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.080 -0.542 9.415 9.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.059 4.059 3 C -0.183 4.183 4 C 0.065 3.935 5 H 0.070 0.930 6 O -0.355 6.355 7 C -0.148 4.148 8 Br -0.095 7.095 9 C -0.138 4.138 10 C -0.159 4.159 11 C 0.106 3.894 12 C -0.527 4.527 13 H 0.083 0.917 14 C -0.134 4.134 15 N -0.515 5.515 16 Si 0.718 3.282 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.137 4.137 21 H 0.071 0.929 22 H 0.081 0.919 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.069 0.931 26 H 0.085 0.915 27 H 0.210 0.790 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.107 0.893 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.099 -0.690 9.258 9.284 hybrid contribution 0.393 0.129 -0.490 0.642 sum 0.493 -0.560 8.768 8.800 Atomic orbital electron populations 1.21566 0.94617 1.01493 0.99811 1.21737 0.95835 0.94469 0.93849 1.21743 1.00507 0.95495 1.00575 1.23132 0.86593 0.91656 0.92118 0.92959 1.86575 1.34016 1.74471 1.40394 1.27483 0.93604 0.97938 0.95791 1.97189 1.61111 1.84065 1.67123 1.23048 0.95630 0.96875 0.98218 1.23286 0.98081 0.98415 0.96153 1.20174 0.88870 0.90181 0.90208 1.20618 1.42439 0.98342 0.91319 0.91660 1.24958 0.94802 0.94827 0.98788 1.69918 1.41955 1.11215 1.28460 0.86557 0.77663 0.80210 0.83722 1.19691 1.21075 1.21050 1.23824 1.00642 0.98605 0.90675 0.92866 0.91875 0.94664 0.94780 0.93071 0.91450 0.79032 0.92695 0.91694 0.93289 0.89263 0.92946 0.93087 0.89220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.20 6.83 37.16 0.25 -1.95 16 2 C -0.06 -1.12 0.57 -152.11 -0.09 -1.21 16 3 C -0.13 -2.30 7.87 37.16 0.29 -2.01 16 4 C 0.13 2.23 3.33 -24.34 -0.08 2.15 16 5 H 0.05 0.91 7.72 -51.93 -0.40 0.51 16 6 O -0.55 -9.00 9.90 -35.23 -0.35 -9.35 16 7 C -0.07 -1.35 1.74 -85.36 -0.15 -1.50 16 8 Br -0.18 -2.96 33.91 -68.01 -2.31 -5.27 16 9 C -0.10 -1.93 6.04 -22.99 -0.14 -2.07 16 10 C -0.12 -2.66 5.41 -22.98 -0.12 -2.78 16 11 C 0.11 2.37 0.48 -150.31 -0.07 2.30 16 12 C -0.49 -12.10 8.28 -34.44 -0.29 -12.38 16 13 H 0.07 1.60 6.33 -52.48 -0.33 1.27 16 14 C 0.07 1.75 5.35 -17.82 -0.10 1.66 16 15 N -0.88 -22.98 10.42 55.43 0.58 -22.41 16 16 Si 0.89 20.01 29.54 -169.99 -5.02 14.99 16 17 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 C -0.10 -2.15 5.52 -22.37 -0.12 -2.27 16 21 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 22 H 0.06 1.20 5.50 -51.93 -0.29 0.92 16 23 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.03 0.55 8.14 -51.92 -0.42 0.12 16 25 H 0.05 0.93 7.23 -51.93 -0.38 0.56 16 26 H 0.07 1.27 6.60 -51.93 -0.34 0.92 16 27 H 0.36 4.77 9.12 45.56 0.42 5.19 16 28 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 1.19 6.79 -51.92 -0.35 0.84 16 30 H 0.05 1.05 5.43 -51.93 -0.28 0.76 16 31 H 0.09 2.21 6.40 -51.93 -0.33 1.88 16 32 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 33 H 0.05 1.11 7.26 -51.93 -0.38 0.73 16 34 H 0.09 2.20 7.21 -51.93 -0.37 1.83 16 LS Contribution 272.95 15.07 4.11 4.11 Total: -1.00 -25.02 272.95 -7.46 -32.48 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -3.86 Total: 5.50 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: -0.61 Total: -20.05 kcal Atomic # 7 Polarization: -22.98 SS G_CDS: 0.58 Total: -22.41 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -0.35 Total: -9.35 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Atomic # 35 Polarization: -2.96 SS G_CDS: -2.31 Total: -5.27 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -25.02 -7.46 -32.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085398890.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.910 kcal (2) G-P(sol) polarization free energy of solvation -25.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds